DK952942 |
Clone id |
TST38A01NGRL0015_H09 |
Library |
TST38 |
Length |
583 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_H09. 5' end sequence. |
Accession |
DK952942 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL2504Contig1 |
Sequence |
GGGTAACATCGGGATTTCATGCATCTGTGAACTTTGGCAACTATGCCTATGGAGGATATG TTCCTAACAGCCCTGGTATGACAAGGCTTTTTATCCCAGAGGAGGGAACGAAGGAGTATG AGAAGATGATGGAGGATCCTGAGAGGTTCTACATGGACTTGATTCCCTCTCAAGGAGTGG CCACCATTACCATGGCAACATTCGAGTCACTGGCACATCATTTGGAGGAAGAGGAGTACT TGGGACAGCGACCTGATGCGCAATGGACTAGTGACAAATGTGCGCTTGCTGCCCTTGAGA AGTTCTGCCGCAACATCGCTAATGCTGAGGTGGCTATTAACGCTCGCAATGCTGCATATA CCAGCCTTCATCACCGTGCTGGTCCTGTTCTCATGCCATACACTCTCCTCACACCTTCAT CTGGAGGTGTGGGCATGACTTTCCGTGGTGTACCCAACAGTATTTCCATGTAGTGAATGT GTTCTTGCAAGCGAAATAAGCGCCTGAAAGAGAACCTGAGGGAATGTAGAGAGATCTCTG ATCTTTTAATAATGTGTTTCAAGAAGAAGCTGCTGGCCTTGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P14856 |
Definition |
sp|P14856|LOX2_PEA Seed lipoxygenase-2 OS=Pisum sativum |
Align length |
154 |
Score (bit) |
140.0 |
E-value |
5.0e-33 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952942|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_H09, 5' (583 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P14856|LOX2_PEA Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.... 140 5e-33 sp|Q7XV13|LOX5_ORYSJ Putative lipoxygenase 5 OS=Oryza sativa sub... 140 6e-33 sp|P24095|LOXX_SOYBN Seed lipoxygenase OS=Glycine max GN=LOX1.4 ... 137 3e-32 sp|P09918|LOX3_PEA Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.... 137 3e-32 sp|P09186|LOX3_SOYBN Seed lipoxygenase-3 OS=Glycine max GN=LOX1.... 136 7e-32 sp|P38415|LOXA_SOLLC Lipoxygenase A OS=Solanum lycopersicum GN=L... 135 1e-31 sp|P08170|LOX1_SOYBN Seed lipoxygenase-1 OS=Glycine max GN=LOX1.... 135 1e-31 sp|P37831|LOX1_SOLTU Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1... 134 3e-31 sp|P27480|LOXA_PHAVU Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOX... 134 4e-31 sp|P09439|LOX2_SOYBN Seed lipoxygenase-2 OS=Glycine max GN=LOX1.... 130 4e-30 sp|Q06327|LOX1_ARATH Lipoxygenase 1 OS=Arabidopsis thaliana GN=L... 129 1e-29 sp|Q76I22|LOX1_ORYSJ Lipoxygenase 1 OS=Oryza sativa subsp. japon... 125 1e-28 sp|P29250|LOX2_ORYSJ Lipoxygenase 2 OS=Oryza sativa subsp. japon... 125 2e-28 sp|P38414|LOX1_LENCU Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE... 125 2e-28 sp|P38417|LOX4_SOYBN Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=... 124 3e-28 sp|P38416|LOXB_SOLLC Lipoxygenase B OS=Solanum lycopersicum GN=L... 119 1e-26 sp|Q7G794|LOX3_ORYSJ Putative lipoxygenase 3 OS=Oryza sativa sub... 119 1e-26 sp|P29114|LOX1_HORVU Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1... 118 2e-26 sp|Q8H016|LOX6_ORYSJ Probable lipoxygenase 6 OS=Oryza sativa sub... 117 3e-26 sp|P38418|LOXC_ARATH Lipoxygenase, chloroplastic OS=Arabidopsis ... 116 9e-26 sp|P27481|LOXB_PHAVU Lipoxygenase (Fragment) OS=Phaseolus vulgar... 114 3e-25 sp|Q53RB0|LOX4_ORYSJ Probable lipoxygenase 4 OS=Oryza sativa sub... 114 3e-25 sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplastic OS=Hordeum... 114 4e-25 sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sat... 105 1e-22 sp|Q84YK8|LOXC2_ORYSJ Probable lipoxygenase 8, chloroplastic OS=... 103 5e-22 sp|P93184|LOX21_HORVU Lipoxygenase 2.1, chloroplastic OS=Hordeum... 96 2e-19 sp|Q8GSM3|LOX22_HORVU Lipoxygenase 2.2, chloroplastic OS=Hordeum... 92 1e-18 sp|O16025|AOSL_PLEHO Allene oxide synthase-lipoxygenase protein ... 48 3e-05 sp|Q9BYJ1|LOXE3_HUMAN Epidermis-type lipoxygenase 3 OS=Homo sapi... 44 6e-04 sp|P09917|LOX5_HUMAN Arachidonate 5-lipoxygenase OS=Homo sapiens... 44 8e-04
>sp|P14856|LOX2_PEA Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1 Length = 864
Score = 140 bits (353), Expect = 5e-33 Identities = 71/154 (46%), Positives = 98/154 (63%) Frame = +3
Query: 9 SGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVATI 188 S HA+VNFG Y YGG + N P ++R +PEEGT EY++M++ ++ Y+ I + I Sbjct: 713 SALHAAVNFGQYPYGGLILNRPTLSRRLLPEEGTAEYDEMVKSSQKAYLRTITPKFQTLI 772
Query: 189 TMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYTSL 368 ++ E L+ H +E YLGQR + WTSD AL A +KF +A E + +N SL Sbjct: 773 DLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNND-PSL 831
Query: 369 HHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 +HR GPV +PYTLL PSS G+TFRG+PNSIS+ Sbjct: 832 YHRVGPVQLPYTLLHPSS-KEGLTFRGIPNSISI 864
>sp|Q7XV13|LOX5_ORYSJ Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2 Length = 899
Score = 140 bits (352), Expect = 6e-33 Identities = 69/154 (44%), Positives = 96/154 (62%) Frame = +3
Query: 9 SGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVATI 188 S HA++NFG Y GGY+PN P + R +P EG EY ++ DP RF++ +PS T Sbjct: 748 SAQHAALNFGQYPLGGYIPNRPPLMRRLVPAEGDPEYAHLVADPHRFFLSALPSLTQTTT 807
Query: 189 TMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYTSL 368 M ++L+ H +EEYLG+RPD WT+D ALAA +F ++ AE I RNA S Sbjct: 808 FMTVIDTLSTHSADEEYLGERPDEAWTADPAALAAAREFAADVRRAEEEIERRNAD-PSR 866
Query: 369 HHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 +R G ++PY L+ PSS G G+T RGVPNS+++ Sbjct: 867 RNRCGAGVLPYELMAPSS-GPGITCRGVPNSVTI 899
>sp|P24095|LOXX_SOYBN Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1 Length = 864
Score = 137 bits (346), Expect = 3e-32 Identities = 71/154 (46%), Positives = 99/154 (64%) Frame = +3
Query: 9 SGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVATI 188 S HA+VNFG Y YGG + N P + R FIP EGT EY++M+++P++ Y+ I + I Sbjct: 713 SALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLI 772
Query: 189 TMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYTSL 368 ++ E L+ H +E YLG+R WT+DK AL A ++F + E INARN+ SL Sbjct: 773 DLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSD-PSL 831
Query: 369 HHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 +R GPV +PYTLL SS G+TF+G+PNSIS+ Sbjct: 832 RNRTGPVQLPYTLLHRSS-EEGLTFKGIPNSISI 864
>sp|P09918|LOX3_PEA Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1 Length = 861
Score = 137 bits (346), Expect = 3e-32 Identities = 70/154 (45%), Positives = 100/154 (64%) Frame = +3
Query: 9 SGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVATI 188 S HA+VNFG Y+YGG + N P ++R F+PE+G+ E+E++++ P++ Y+ I + I Sbjct: 710 SALHAAVNFGQYSYGGLILNRPTLSRRFMPEKGSAEFEELVKSPQKAYLKTITPKFQTLI 769
Query: 189 TMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYTSL 368 ++ E L+ H +E YLG+R + WTSDK AL A +KF +A E + RN L Sbjct: 770 DLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNND-EKL 828
Query: 369 HHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 +R GPV MPYTLL PSS G+TFRG+PNSIS+ Sbjct: 829 RNRHGPVEMPYTLLYPSS-KEGLTFRGIPNSISI 861
>sp|P09186|LOX3_SOYBN Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1 Length = 857
Score = 136 bits (343), Expect = 7e-32 Identities = 69/154 (44%), Positives = 99/154 (64%) Frame = +3
Query: 9 SGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVATI 188 S HA+VNFG Y YGG + N P ++R F+PE+G+ EYE++ ++P++ Y+ I + I Sbjct: 706 SALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSAEYEELRKNPQKAYLKTITPKFQTLI 765
Query: 189 TMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYTSL 368 ++ E L+ H +E YLG+R + WTSD AL A ++F +A E ++ RN L Sbjct: 766 DLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNND-EKL 824
Query: 369 HHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 +R GPV MPYTLL PSS G+TFRG+PNSIS+ Sbjct: 825 RNRCGPVQMPYTLLLPSS-KEGLTFRGIPNSISI 857
>sp|P38415|LOXA_SOLLC Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1 Length = 860
Score = 135 bits (340), Expect = 1e-31 Identities = 68/156 (43%), Positives = 99/156 (63%) Frame = +3
Query: 3 VTSGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVA 182 + S HA+VNFG Y Y GY+PN P ++R F+PE GT EYE++ ++P++ ++ I +Q Sbjct: 707 IASALHAAVNFGQYPYAGYLPNRPTVSRKFMPEPGTPEYEELKKNPDKAFLKTITAQLQT 766
Query: 183 TITMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYT 362 + ++ E L+ H +E YLGQR +WT DK LAA E+F + + E I RN Sbjct: 767 LLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRN-GNN 825
Query: 363 SLHHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 L +R GPV PYTLL P+S G G+T +G+PNS+S+ Sbjct: 826 ILTNRTGPVNAPYTLLFPTSEG-GLTGKGIPNSVSI 860
>sp|P08170|LOX1_SOYBN Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2 Length = 839
Score = 135 bits (340), Expect = 1e-31 Identities = 70/156 (44%), Positives = 97/156 (62%) Frame = +3
Query: 3 VTSGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVA 182 + S HA+VNFG Y YGG + N P +R +PE+GT EYE+M+ + E+ Y+ I S+ Sbjct: 685 IASALHAAVNFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAYLRTITSKLPT 744
Query: 183 TITMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYT 362 I+++ E L+ H +E YLGQR + WTSD AL A +KF + E + RN + Sbjct: 745 LISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPS 804
Query: 363 SLHHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 +R GPV +PYTLL PSS G+TFRG+PNSIS+ Sbjct: 805 LQGNRLGPVQLPYTLLYPSS-EEGLTFRGIPNSISI 839
>sp|P37831|LOX1_SOLTU Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1 Length = 861
Score = 134 bits (337), Expect = 3e-31 Identities = 67/156 (42%), Positives = 100/156 (64%) Frame = +3
Query: 3 VTSGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVA 182 + S HA+VNFG Y Y GY+PN P ++R F+PE GT EYE++ +P++ ++ I +Q Sbjct: 708 IASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEPGTPEYEELKRNPDKAFLKTITAQLQT 767
Query: 183 TITMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYT 362 + ++ E L+ H +E YLGQR +WT DK LAA ++F + + + E I RN Sbjct: 768 LLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGD-N 826
Query: 363 SLHHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 L +R+GPV PYTLL P+S G G+T +G+PNS+S+ Sbjct: 827 ILTNRSGPVNAPYTLLFPTSEG-GLTGKGIPNSVSI 861
>sp|P27480|LOXA_PHAVU Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1 Length = 862
Score = 134 bits (336), Expect = 4e-31 Identities = 66/156 (42%), Positives = 98/156 (62%) Frame = +3
Query: 3 VTSGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVA 182 + S HA+VNFG Y YGG++ N P +TR +PE GTKEY ++ + ++ Y+ I + A Sbjct: 708 IASALHAAVNFGQYPYGGFILNRPTITRRLLPEPGTKEYGELTSNYQKAYLRTITGKVEA 767
Query: 183 TITMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYT 362 + ++ E L+ H +E YLGQR + WT++ AL A ++F + + E I RN + Sbjct: 768 IVDLSVIEILSRHASDEVYLGQRDNPNWTNNIKALQAFKRFGQKLKEIEEKIMGRNKD-S 826
Query: 363 SLHHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 SL +R GPV MPYT+L P+ G+TFRG+PNSIS+ Sbjct: 827 SLRNRNGPVKMPYTVLLPTCEDEGLTFRGIPNSISI 862
>sp|P09439|LOX2_SOYBN Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1 Length = 865
Score = 130 bits (328), Expect = 4e-30 Identities = 68/154 (44%), Positives = 96/154 (62%) Frame = +3
Query: 9 SGFHASVNFGNYAYGGYVPNSPGMTRLFIPEEGTKEYEKMMEDPERFYMDLIPSQGVATI 188 S HA+VNFG Y YGG++ N P +R +PE+GT EYE+M++ ++ Y+ I S+ + Sbjct: 715 SALHAAVNFGQYPYGGFILNRPTSSRRLLPEKGTPEYEEMVKSHQKAYLRTITSKFQTLV 774
Query: 189 TMATFESLAHHLEEEEYLGQRPDAQWTSDKCALAALEKFCRNIANAEVAINARNAAYTSL 368 ++ E L+ H +E YLGQR + WTSD AL A +KF + E + AR SL Sbjct: 775 DLSVIEILSRHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKL-ARKNNDQSL 833
Query: 369 HHRAGPVLMPYTLLTPSSGGVGMTFRGVPNSISM 470 +R GPV +PYTLL P+S G+T RG+PNSIS+ Sbjct: 834 SNRLGPVQLPYTLLHPNS--EGLTCRGIPNSISI 865
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RPN1 |
Definition |
tr|A9RPN1|A9RPN1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
156 |
Score (bit) |
153.0 |
E-value |
8.0e-36 |
Report |
|