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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952943
Clone id TST38A01NGRL0015_H10
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_H10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATCCATGCCAATGTCTCTTTGGATATTTTCTTGAAAACACTTCTTCTGAAGCAGCGAAGG
AAGGTAGCAGAGCTCTACATCCGCAGCATCTACATTACTTACATTAGCCTGCAGAACCTC
AAAATGGTATCGTCTCTTTCATCCCGCCAGCAGATTTCTGCTGCAGCGGGGGCTGTGGGT
TCTCGCCATAGCTACACGCAGAAGAGCTCGGCATCAGTCAAAATACCGTCCTCCTTTAAT
GGGCTGAGGAAATCTGGGCTATGGGTTTGTAGAAAGGAATCCACAGCCACACTTAACAAC
AGCACACAGAAAACATTCCTCCTTGCTTTGGTTGCGTCTGCGGCCGCTCCTCCAACCACC
TCTACTGTCACTATCCCTTCACTAAACGAGCTCCCCATTAATGGGTTTATCAATTCACAC
GGTAGAATCAAACCTCCAGTTGAGCCAAATACTGCAGCCTCCGTGTTTGCCGTGCTTGAC
AAGACAAGAAGGTTCAGTACATCGGGTTCTCG
■■Homology search results ■■ -
sp_hit_id Q8TYT7
Definition sp|Q8TYT7|PYRG_METKA CTP synthase OS=Methanopyrus kandleri
Align length 57
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952943|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_H10, 5'
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TYT7|PYRG_METKA CTP synthase OS=Methanopyrus kandleri GN=py...    32   1.3  
sp|Q8C0X0|LCA5L_MOUSE Lebercilin-like protein OS=Mus musculus GN...    32   2.2  
sp|A9WSE6|RUVC_RENSM Crossover junction endodeoxyribonuclease ru...    30   6.5  
sp|Q04652|KELC_DROME Ring canal kelch protein OS=Drosophila mela...    30   6.5  
sp|Q9FIA0|CNGT2_ARATH Cytokinin-N-glucosyltransferase 2 OS=Arabi...    30   6.5  
sp|Q822F8|AROC_CHLCV Chorismate synthase OS=Chlamydophila caviae...    30   8.5  

>sp|Q8TYT7|PYRG_METKA CTP synthase OS=Methanopyrus kandleri GN=pyrG
           PE=3 SV=1
          Length = 535

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 168 RCSRNLLAG*KRRYHFEVLQANVSNVDAADVELCY-LPSLLQKKCFQENIQRDIGMD 1
           RC R L  G KR+          + +DA DV+L Y +P LL+++ F + I   +G+D
Sbjct: 211 RCERPLDDGVKRKIALHTNVPREAVIDAHDVDLVYKVPLLLERQGFGDYICERLGLD 267


>sp|Q8C0X0|LCA5L_MOUSE Lebercilin-like protein OS=Mus musculus
           GN=Lca5l PE=2 SV=1
          Length = 741

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
 Frame = +1

Query: 7   ANVSLDIFLKTLLLKQRRKVAELYIRSIYITYISLQNLK------MVSSLSSRQQISAAA 168
           A  +L   ++ L  K + K  EL I++IY   I L+NL        VSS  S Q    + 
Sbjct: 314 ATKTLQAEVRQLQQKLKEKDRELEIKNIYTNRI-LKNLNDKEDYPKVSSTKSVQADRKSL 372

Query: 169 GAVGSRHSYTQKSSASVKIPSSFNGLRKSGLWVCRKESTAT 291
            +V  RH  TQKS     I     G R  G    +++ST T
Sbjct: 373 PSVNMRHQETQKSDVPFWIT---KGKRGKGNIAHKEKSTET 410


>sp|A9WSE6|RUVC_RENSM Crossover junction endodeoxyribonuclease ruvC
           OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM
           20767 / IFO 15589) GN=ruvC PE=3 SV=1
          Length = 193

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 383 SEGIVTVEVVGGAAADATKARRNVFCVLLLSVAVDSFLQTHSPDFLS 243
           S  +V V V+G ++      R     +L++S ++D +L THSPD L+
Sbjct: 25  SASLVAVGVIGSSSELPLSQR-----LLVISESIDQWLDTHSPDVLA 66


>sp|Q04652|KELC_DROME Ring canal kelch protein OS=Drosophila
            melanogaster GN=kel PE=1 SV=4
          Length = 1477

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
 Frame = +1

Query: 4    HANVSLDI------FLKTLLLKQRRKVAELYIRSIYITYISLQNLKMVSSLS-SRQQISA 162
            +ANV + +      F   L  +  + +  +Y  S     ++  N  +  ++S  R   SA
Sbjct: 1045 YANVKVPVKNSASSFFSCLHGENSQSMTNIYKTSGTAAAMAAHNSPLTPNVSMERASRSA 1104

Query: 163  AAGAVGSRHSYTQKSSASVKIPSSFN 240
            +AGA GS  +  ++ SA+  IPSS N
Sbjct: 1105 SAGAAGSAAAAVEEHSAADSIPSSSN 1130


>sp|Q9FIA0|CNGT2_ARATH Cytokinin-N-glucosyltransferase 2
           OS=Arabidopsis thaliana GN=UGT76C2 PE=1 SV=1
          Length = 450

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 64  VAELYIRSIYITYISLQNLKMVSSLSSRQQISAAAGAVGSRHSYTQKSSASV 219
           V E  IRS  + Y+S + L+  S   S +       A+G  HSY   SS+S+
Sbjct: 195 VVETTIRSSGLIYMSCEELEKDSLTLSNEIFKVPVFAIGPFHSYFSASSSSL 246


>sp|Q822F8|AROC_CHLCV Chorismate synthase OS=Chlamydophila caviae
           GN=aroC PE=3 SV=1
          Length = 359

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
 Frame = -1

Query: 413 LINPLMGSSFSEGIVTVEVVGGAAADATKARRNVFCVLLLSVAVDSFLQT---------- 264
           L++PL G   S       V  G  A    A  +++C+  LS      ++T          
Sbjct: 115 LVDPLGGGRSSARETACRVAAGVIAAKILAHYDIYCLAFLSKLGKESIETYPKLSKEFAQ 174

Query: 263 --HSPDFLSPLKEDGIL 219
             ++  FLSPL  D IL
Sbjct: 175 NIYNSPFLSPLDNDSIL 191
tr_hit_id A8IKC2
Definition tr|A8IKC2|A8IKC2_AZOC5 Putative ABC transporter permease protein OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
Align length 49
Score (bit) 34.3
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952943|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_H10, 5'
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8IKC2|A8IKC2_AZOC5 Putative ABC transporter permease protein...    34   3.7  
tr|A5EJZ3|A5EJZ3_BRASB Putative Branched-chain amino acid ABC tr...    33   6.2  
tr|A4YVA1|A4YVA1_BRASO Putative Branched-chain amino acid ABC tr...    33   6.2  
tr|Q47B82|Q47B82_DECAR TrkA-N:Sodium/hydrogen exchanger OS=Dechl...    33   8.1  
tr|A9HC82|A9HC82_9RHOB Putative uncharacterized protein OS=Roseo...    33   8.1  

>tr|A8IKC2|A8IKC2_AZOC5 Putative ABC transporter permease protein
           OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
           5975 / ORS 571) GN=AZC_3888 PE=4 SV=1
          Length = 290

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 488 LVLSSTANTEAAVFGSTGGLILPCELINPLMGSSF-SEGIVTVEVVGGA 345
           L+ S T    AA+ G  GGL  P   + P MG++F  E  VTV VVGGA
Sbjct: 186 LIYSLTFGLGAALAGLAGGLYAPTMTLVPTMGATFIMEAFVTV-VVGGA 233


>tr|A5EJZ3|A5EJZ3_BRASB Putative Branched-chain amino acid ABC
           transporter (Permease protein) OS=Bradyrhizobium sp.
           (strain BTAi1 / ATCC BAA-1182) GN=BBta_4451 PE=4 SV=1
          Length = 288

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = -1

Query: 485 VLSSTANTEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAA 342
           V  ST    AAV G  GGL+ P   I P+MG ++        V GGAA
Sbjct: 185 VYMSTFALGAAVTGLAGGLLAPVSGITPVMGGAYVAKAFMTVVGGGAA 232


>tr|A4YVA1|A4YVA1_BRASO Putative Branched-chain amino acid ABC
           transporter (Permease protein) OS=Bradyrhizobium sp.
           (strain ORS278) GN=BRADO4075 PE=4 SV=1
          Length = 288

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = -1

Query: 485 VLSSTANTEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAA 342
           V  ST    AAV G  GGL+ P   I P+MG ++        V GGAA
Sbjct: 185 VYMSTFALGAAVTGLAGGLLAPVSGITPVMGGAYVAKAFMTVVGGGAA 232


>tr|Q47B82|Q47B82_DECAR TrkA-N:Sodium/hydrogen exchanger
           OS=Dechloromonas aromatica (strain RCB) GN=Daro_3169
           PE=4 SV=1
          Length = 567

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -1

Query: 347 AAADATKARRNVFCVLLLSVAVDSFLQTHSPDFLSPLKEDGI 222
           AA DA   R+   C   L+ AV+  L+THS D    L++DGI
Sbjct: 497 AAPDAINIRQMADCARTLNPAVEIVLRTHSDDDSELLRKDGI 538


>tr|A9HC82|A9HC82_9RHOB Putative uncharacterized protein
           OS=Roseobacter litoralis Och 149 GN=RLO149_18303 PE=4
           SV=1
          Length = 225

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 22/50 (44%), Positives = 23/50 (46%)
 Frame = +1

Query: 160 AAAGAVGSRHSYTQKSSASVKIPSSFNGLRKSGLWVCRKESTATLNNSTQ 309
           AAAG  GS     QK    VK PS FNGL     WVC    T +   S Q
Sbjct: 45  AAAGNGGSAFLVAQKP---VKAPSGFNGLCARYDWVCSMSGTGSTLTSKQ 91