DK952946
Clone id TST38A01NGRL0015_H13
Library
Length 591
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_H13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GAGGAGAATGAGATCTCTAACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTGTAGGCG
GTGGCCCGGTTAAGGGGGAGAACCCCCGGAGCCGTAGCGAAAGCGAGTCTTGCTGGGGCA
ATTGTCACCGCTTATAAACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGG
GTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGT
TAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGC
GCAGCAGTTGACTAGACCATCTAGGGGTAAAGCACCGTTCCGGTGCGGGCTGCGAGAGCG
GTACCAAATCGAGGCAAACTCTGAATACTAGATGTAACGTTCAAGTAAAAGGAACGAAGG
AAAAGGGTCAACCAGTGAGACGATGAGGGATAAGCTTCACCGTCGAGAGGGGAACAGCCC
AGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGGTAAAGGAGGTAGGAGTGCAAAG
ACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGGCGTAAT
■■Homology search results ■■ -
sp_hit_id Q99819
Definition sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo sapiens
Align length 26
Score (bit) 30.8
E-value 5.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952946|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_H13, 5'
(591 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo s... 31 5.3
sp|Q88AR1|GSH1_PSESM Glutamate--cysteine ligase OS=Pseudomonas s... 31 5.3
sp|Q48PX1|GSH1_PSE14 Glutamate--cysteine ligase OS=Pseudomonas s... 31 5.3
sp|A2A8U2|TM201_MOUSE Transmembrane protein 201 OS=Mus musculus ... 30 6.9
sp|Q4ZZU4|GSH1_PSEU2 Glutamate--cysteine ligase OS=Pseudomonas s... 30 7.0
sp|P61379|GSH1_PSESY Glutamate--cysteine ligase OS=Pseudomonas s... 30 7.0
sp|Q5R108|RECO_IDILO DNA repair protein recO OS=Idiomarina loihi... 30 9.0
sp|Q8UVR5|BAZ1A_XENLA Bromodomain adjacent to zinc finger domain... 30 9.0

>sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo
sapiens GN=ARHGDIG PE=2 SV=2
Length = 225

Score = 30.8 bits (68), Expect = 5.3
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2

Query: 101 KRVLLGQLSPLINPNLGDLSMTRMKL 178
KRVLLG L P ++P+L ++ +TR+ L
Sbjct: 73 KRVLLGPLPPAVDPSLPNVQVTRLTL 98


>sp|Q88AR1|GSH1_PSESM Glutamate--cysteine ligase OS=Pseudomonas
syringae pv. tomato GN=gshA PE=3 SV=1
Length = 529

Score = 30.8 bits (68), Expect = 5.3
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1

Query: 106 SLAGAIVTAYKPEPG*SIHDQDEAWVKLSGGPNRLMLKNQRMS 234
SL A+ T YKP HDQ+ WV+L+ N L ++N+ S
Sbjct: 263 SLRKAVATPYKPYVDIGTHDQNGEWVQLN--TNVLQIENEYYS 303


>sp|Q48PX1|GSH1_PSE14 Glutamate--cysteine ligase OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=gshA PE=3 SV=1
Length = 535

Score = 30.8 bits (68), Expect = 5.3
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1

Query: 106 SLAGAIVTAYKPEPG*SIHDQDEAWVKLSGGPNRLMLKNQRMS 234
SL A+ T YKP HDQ+ WV+L+ N L ++N+ S
Sbjct: 269 SLRKAVATPYKPYVDVGTHDQNGEWVQLN--TNVLQIENEYYS 309


>sp|A2A8U2|TM201_MOUSE Transmembrane protein 201 OS=Mus musculus
GN=Tmem201 PE=2 SV=1
Length = 664

Score = 30.4 bits (67), Expect = 6.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2

Query: 131 AVTIAPARLAFATAPGVLPLNRATAYKSPAHSS 33
+VT +PA L T PG LPL + ++SP S
Sbjct: 409 SVTSSPASLFIPTPPGFLPLTKQQLFRSPRRVS 441


>sp|Q4ZZU4|GSH1_PSEU2 Glutamate--cysteine ligase OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=gshA PE=3 SV=1
Length = 535

Score = 30.4 bits (67), Expect = 7.0
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1

Query: 106 SLAGAIVTAYKPEPG*SIHDQDEAWVKLSGGPNRLMLKNQRMS 234
SL A+ T YKP HDQ+ WV+L+ N L ++N+ S
Sbjct: 269 SLRKAVATPYKPYVEVGTHDQNGEWVQLN--TNVLQIENEYYS 309


>sp|P61379|GSH1_PSESY Glutamate--cysteine ligase OS=Pseudomonas
syringae pv. syringae GN=gshA PE=3 SV=1
Length = 535

Score = 30.4 bits (67), Expect = 7.0
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1

Query: 106 SLAGAIVTAYKPEPG*SIHDQDEAWVKLSGGPNRLMLKNQRMS 234
SL A+ T YKP HDQ+ WV+L+ N L ++N+ S
Sbjct: 269 SLRKAVATPYKPYVEVGTHDQNGEWVQLN--TNVLQIENEYYS 309


>sp|Q5R108|RECO_IDILO DNA repair protein recO OS=Idiomarina
loihiensis GN=recO PE=3 SV=1
Length = 234

Score = 30.0 bits (66), Expect = 9.0
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -3

Query: 367 LVPLSQPAPERCFTPRWSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADFSTSVGSDLHL 188
LVP APE F S+ N+ R EPA FEW + ++ D+ + L
Sbjct: 99 LVPTEAEAPE-LFESYLSALQNMTNSERVEPALRQFEWQLLQHLGAAFDWHYDADTGNVL 157

Query: 187 VSPK---LHPGHG*ITQVR 140
K P HG +TQ R
Sbjct: 158 SDSKWCYFIPDHGFVTQAR 176


>sp|Q8UVR5|BAZ1A_XENLA Bromodomain adjacent to zinc finger domain
protein 1A (Fragment) OS=Xenopus laevis GN=baz1a PE=2
SV=1
Length = 627

Score = 30.0 bits (66), Expect = 9.0
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = +2

Query: 239 VRGEMPLEPRASWFSPKCVEAQQLTR-PSRGKAPFRCGLRERYQIEANSEY*M*RSSKRN 415
VR ++ P WF P+C Q+ R PS R RY ++++ E K
Sbjct: 252 VRPKLKYVPEGDWFCPECHPKQRSHRLPS----------RHRYSMDSDEEEEEELDQKEE 301

Query: 416 EGKGSTSETMRDKLHRREGNSPDHQLRPLNDRSVVK 523
E + E + + + +E + + P R+ V+
Sbjct: 302 EEEEEEQEELSESENEQEDEMSEEESPPKRGRAKVQ 337


tr_hit_id Q5M9Z9
Definition tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b OS=Nicotiana tabacum
Align length 37
Score (bit) 77.4
E-value 2.0e-34
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952946|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_H13, 5'
(591 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b ... 77 2e-34
tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s... 136 8e-31
tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic... 129 2e-28
tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol... 77 1e-19
tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1 87 5e-16
tr|A5ZTV7|A5ZTV7_9FIRM Putative uncharacterized protein OS=Rumin... 79 1e-13
tr|A5ZQM1|A5ZQM1_9FIRM Putative uncharacterized protein OS=Rumin... 79 1e-13
tr|A5KL06|A5KL06_9FIRM Putative uncharacterized protein OS=Rumin... 77 9e-13
tr|A7B8Q0|A7B8Q0_RUMGN Putative uncharacterized protein OS=Rumin... 72 3e-12
tr|B1BC32|B1BC32_CLOBO Putative uncharacterized protein OS=Clost... 45 4e-10
tr|Q85WS9|Q85WS9_PINKO ORF40u OS=Pinus koraiensis PE=4 SV=2 65 2e-09
tr|A7PNF4|A7PNF4_VITVI Chromosome chr1 scaffold_22, whole genome... 65 3e-09
tr|A5KR91|A5KR91_9FIRM Putative uncharacterized protein OS=Rumin... 62 3e-09
tr|A7QY24|A7QY24_VITVI Chromosome undetermined scaffold_237, who... 52 9e-09
tr|B0A7G6|B0A7G6_9CLOT Putative uncharacterized protein OS=Clost... 62 2e-08
tr|A5KRH1|A5KRH1_9FIRM Putative uncharacterized protein OS=Rumin... 62 2e-08
tr|B2PX02|B2PX02_PROST Putative uncharacterized protein OS=Provi... 62 3e-08
tr|A7B5W8|A7B5W8_RUMGN Putative uncharacterized protein OS=Rumin... 57 6e-08
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 60 9e-08
tr|B0NEY0|B0NEY0_EUBSP Putative uncharacterized protein OS=Clost... 54 4e-07
tr|A2PD01|A2PD01_VIBCH Putative uncharacterized protein OS=Vibri... 57 6e-07
tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino... 56 2e-06
tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino... 56 2e-06
tr|A8URE2|A8URE2_9AQUI Putative uncharacterized protein OS=Hydro... 55 4e-06
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 53 1e-05
tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Popul... 53 1e-05
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep... 53 1e-05
tr|A4ECR2|A4ECR2_9ACTN Putative uncharacterized protein OS=Colli... 53 1e-05
tr|B1BE08|B1BE08_CLOBO Putative uncharacterized protein OS=Clost... 51 3e-05
tr|B7R8W0|B7R8W0_9THEO Putative uncharacterized protein OS=Carbo... 47 6e-04

>tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b
OS=Nicotiana tabacum GN=orf106b PE=4 SV=1
Length = 106

Score = 77.4 bits (189), Expect(3) = 2e-34
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = -1

Query: 312 VNCCASTHFGENQLALGSSGISPLTTTHPLIFQHQSV 202
VNCCASTHFGENQLALG+SGISPLTTTHPLI QHQSV
Sbjct: 48 VNCCASTHFGENQLALGASGISPLTTTHPLILQHQSV 84



Score = 60.8 bits (146), Expect(3) = 2e-34
Identities = 31/47 (65%), Positives = 35/47 (74%)
Frame = -3

Query: 460 VKLIPHRLTG*PFSFVPFT*TLHLVFRVCLDLVPLSQPAPERCFTPR 320
+KLIPHRLT P P +LVFRVCLDLVPLS+PAP+ CFTPR
Sbjct: 1 MKLIPHRLTSRPCP--PLILRSYLVFRVCLDLVPLSRPAPKPCFTPR 45



Score = 52.0 bits (123), Expect(3) = 2e-34
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -2

Query: 200 GPPLSFTQASSWSWIDHPGSG 138
GPPLSFTQASSWSWIDHPGSG
Sbjct: 85 GPPLSFTQASSWSWIDHPGSG 105


>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa
subsp. indica PE=4 SV=1
Length = 109

Score = 136 bits (343), Expect = 8e-31
Identities = 75/113 (66%), Positives = 80/113 (70%), Gaps = 2/113 (1%)
Frame = +2

Query: 251 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRE--RYQIEANSEY*M*RSSKRNEGK 424
MPLEPRASWFSPKCVEAQQLT K F G + + N+ Y + G
Sbjct: 1 MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRY-----DPKITGV 55

Query: 425 GSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP*KS 583
S SETM DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP KS
Sbjct: 56 RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKS 108


>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=4 SV=1
Length = 102

Score = 129 bits (323), Expect = 2e-28
Identities = 70/108 (64%), Positives = 77/108 (71%)
Frame = +2

Query: 251 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY*M*RSSKRNEGKGS 430
MPLEPRASWFSPKCVEAQQLT K F G E+ ++ +++ S
Sbjct: 1 MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGR------ESGTKSRQTLNTRYPWRVKS 54

Query: 431 TSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP 574
SE M DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP
Sbjct: 55 ASEAMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP 102


>tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00035369001 PE=4 SV=1
Length = 235

Score = 77.0 bits (188), Expect(2) = 1e-19
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = -1

Query: 312 VNCCASTHFGENQLALGSSGISPLTTTHPLIFQHQSVRTST 190
VN CASTHFGENQLALGSS ISPLTTTHPLI QHQSV+TST
Sbjct: 57 VNRCASTHFGENQLALGSSDISPLTTTHPLILQHQSVQTST 97



Score = 43.5 bits (101), Expect(2) = 1e-19
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -3

Query: 388 VFRVCLDLVPLSQPAPERCFTPR 320
+FRVCLDLVPLS+PA ++CFTPR
Sbjct: 32 MFRVCLDLVPLSRPALKQCFTPR 54


>tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1
Length = 46

Score = 87.4 bits (215), Expect = 5e-16
Identities = 42/46 (91%), Positives = 42/46 (91%)
Frame = +2

Query: 251 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY 388
MPLEPRASWFSPKCVEAQQLT PSRGKA FR G RERYQIEANSEY
Sbjct: 1 MPLEPRASWFSPKCVEAQQLTGPSRGKALFRYGPRERYQIEANSEY 46


>tr|A5ZTV7|A5ZTV7_9FIRM Putative uncharacterized protein
OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_02439 PE=4
SV=1
Length = 199

Score = 79.3 bits (194), Expect = 1e-13
Identities = 43/80 (53%), Positives = 52/80 (65%)
Frame = -2

Query: 326 P*MV*STAAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHP 147
P + + A+P+ IS RTS L VR+ F P P LI FN FGPPL T AS+W+WIDHP
Sbjct: 11 PPQISTKASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPLTAASTWTWIDHP 70

Query: 146 GSGL*AVTIAPARLAFATAP 87
SGL +T+A RL F TAP
Sbjct: 71 VSGLPPLTLALLRLGFPTAP 90


>tr|A5ZQM1|A5ZQM1_9FIRM Putative uncharacterized protein
OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_01293 PE=4
SV=1
Length = 199

Score = 79.3 bits (194), Expect = 1e-13
Identities = 43/80 (53%), Positives = 52/80 (65%)
Frame = -2

Query: 326 P*MV*STAAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHP 147
P + + A+P+ IS RTS L VR+ F P P LI FN FGPPL T AS+W+WIDHP
Sbjct: 11 PPQISTKASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPLTAASTWTWIDHP 70

Query: 146 GSGL*AVTIAPARLAFATAP 87
SGL +T+A RL F TAP
Sbjct: 71 VSGLPPLTLALLRLGFPTAP 90


>tr|A5KL06|A5KL06_9FIRM Putative uncharacterized protein
OS=Ruminococcus torques ATCC 27756 GN=RUMTOR_00910 PE=4
SV=1
Length = 245

Score = 76.6 bits (187), Expect = 9e-13
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = -2

Query: 305 AAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHPGSGL*AV 126
A+P+ IS RTS L VR+ F P P LI FN FGPPL FT S+W+WIDHP SGL +
Sbjct: 4 ASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPFTATSTWTWIDHPVSGLLRL 63

Query: 125 TIAPARLAFATAP 87
T A RL F +AP
Sbjct: 64 TFALFRLGFPSAP 76


>tr|A7B8Q0|A7B8Q0_RUMGN Putative uncharacterized protein
OS=Ruminococcus gnavus ATCC 29149 GN=RUMGNA_03973 PE=4
SV=1
Length = 81

Score = 71.6 bits (174), Expect(2) = 3e-12
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2

Query: 305 AAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHPGSGL*AV 126
A+P+ IS RTS L VR+ F P P LI FN FGPPL FT S+W+WIDHP SGL +
Sbjct: 4 ASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPFTATSTWTWIDHPVSGLLRL 63

Query: 125 TIAP 114
TI+P
Sbjct: 64 TISP 67



Score = 23.9 bits (50), Expect(2) = 3e-12
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3

Query: 118 PQQDSLSLRLRGFSP 74
P DS+SLRL+ FSP
Sbjct: 67 PCSDSVSLRLQAFSP 81


>tr|B1BC32|B1BC32_CLOBO Putative uncharacterized protein
OS=Clostridium botulinum C str. Eklund GN=CBC_0457 PE=4
SV=1
Length = 93

Score = 45.4 bits (106), Expect(2) = 4e-10
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = -3

Query: 358 LSQPAPERCFTPRWSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADFST 212
+S P+P P + L L FRGEPA S F+W+F+ H+SS FST
Sbjct: 1 MSAPSPFSALPPLLNYPTLALKLFRGEPAISEFDWNFSAIHSSSHGFST 49



Score = 42.7 bits (99), Expect(2) = 4e-10
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = -2

Query: 203 FGPPLSFTQASSWSWIDHPGSGL*AVTIAPARLAF 99
FGPP +FT ASSW WI H SGL T P + F
Sbjct: 53 FGPPRNFTSASSWPWIGHSVSGLQYATSCPVQTRF 87