DK952946 |
Clone id |
TST38A01NGRL0015_H13 |
Library |
TST38 |
Length |
591 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_H13. 5' end sequence. |
Accession |
DK952946 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL10Contig1 |
Sequence |
GAGGAGAATGAGATCTCTAACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTGTAGGCG GTGGCCCGGTTAAGGGGGAGAACCCCCGGAGCCGTAGCGAAAGCGAGTCTTGCTGGGGCA ATTGTCACCGCTTATAAACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGG GTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGT TAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGC GCAGCAGTTGACTAGACCATCTAGGGGTAAAGCACCGTTCCGGTGCGGGCTGCGAGAGCG GTACCAAATCGAGGCAAACTCTGAATACTAGATGTAACGTTCAAGTAAAAGGAACGAAGG AAAAGGGTCAACCAGTGAGACGATGAGGGATAAGCTTCACCGTCGAGAGGGGAACAGCCC AGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGGTAAAGGAGGTAGGAGTGCAAAG ACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGGCGTAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q99819 |
Definition |
sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo sapiens |
Align length |
26 |
Score (bit) |
30.8 |
E-value |
5.3 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5M9Z9 |
Definition |
tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b OS=Nicotiana tabacum |
Align length |
37 |
Score (bit) |
77.4 |
E-value |
2.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952946|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_H13, 5' (591 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b ... 77 2e-34 tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s... 136 8e-31 tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic... 129 2e-28 tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol... 77 1e-19 tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1 87 5e-16 tr|A5ZTV7|A5ZTV7_9FIRM Putative uncharacterized protein OS=Rumin... 79 1e-13 tr|A5ZQM1|A5ZQM1_9FIRM Putative uncharacterized protein OS=Rumin... 79 1e-13 tr|A5KL06|A5KL06_9FIRM Putative uncharacterized protein OS=Rumin... 77 9e-13 tr|A7B8Q0|A7B8Q0_RUMGN Putative uncharacterized protein OS=Rumin... 72 3e-12 tr|B1BC32|B1BC32_CLOBO Putative uncharacterized protein OS=Clost... 45 4e-10 tr|Q85WS9|Q85WS9_PINKO ORF40u OS=Pinus koraiensis PE=4 SV=2 65 2e-09 tr|A7PNF4|A7PNF4_VITVI Chromosome chr1 scaffold_22, whole genome... 65 3e-09 tr|A5KR91|A5KR91_9FIRM Putative uncharacterized protein OS=Rumin... 62 3e-09 tr|A7QY24|A7QY24_VITVI Chromosome undetermined scaffold_237, who... 52 9e-09 tr|B0A7G6|B0A7G6_9CLOT Putative uncharacterized protein OS=Clost... 62 2e-08 tr|A5KRH1|A5KRH1_9FIRM Putative uncharacterized protein OS=Rumin... 62 2e-08 tr|B2PX02|B2PX02_PROST Putative uncharacterized protein OS=Provi... 62 3e-08 tr|A7B5W8|A7B5W8_RUMGN Putative uncharacterized protein OS=Rumin... 57 6e-08 tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 60 9e-08 tr|B0NEY0|B0NEY0_EUBSP Putative uncharacterized protein OS=Clost... 54 4e-07 tr|A2PD01|A2PD01_VIBCH Putative uncharacterized protein OS=Vibri... 57 6e-07 tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino... 56 2e-06 tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino... 56 2e-06 tr|A8URE2|A8URE2_9AQUI Putative uncharacterized protein OS=Hydro... 55 4e-06 tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 53 1e-05 tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Popul... 53 1e-05 tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep... 53 1e-05 tr|A4ECR2|A4ECR2_9ACTN Putative uncharacterized protein OS=Colli... 53 1e-05 tr|B1BE08|B1BE08_CLOBO Putative uncharacterized protein OS=Clost... 51 3e-05 tr|B7R8W0|B7R8W0_9THEO Putative uncharacterized protein OS=Carbo... 47 6e-04
>tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b OS=Nicotiana tabacum GN=orf106b PE=4 SV=1 Length = 106
Score = 77.4 bits (189), Expect(3) = 2e-34 Identities = 35/37 (94%), Positives = 36/37 (97%) Frame = -1
Query: 312 VNCCASTHFGENQLALGSSGISPLTTTHPLIFQHQSV 202 VNCCASTHFGENQLALG+SGISPLTTTHPLI QHQSV Sbjct: 48 VNCCASTHFGENQLALGASGISPLTTTHPLILQHQSV 84
Score = 60.8 bits (146), Expect(3) = 2e-34 Identities = 31/47 (65%), Positives = 35/47 (74%) Frame = -3
Query: 460 VKLIPHRLTG*PFSFVPFT*TLHLVFRVCLDLVPLSQPAPERCFTPR 320 +KLIPHRLT P P +LVFRVCLDLVPLS+PAP+ CFTPR Sbjct: 1 MKLIPHRLTSRPCP--PLILRSYLVFRVCLDLVPLSRPAPKPCFTPR 45
Score = 52.0 bits (123), Expect(3) = 2e-34 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = -2
Query: 200 GPPLSFTQASSWSWIDHPGSG 138 GPPLSFTQASSWSWIDHPGSG Sbjct: 85 GPPLSFTQASSWSWIDHPGSG 105
>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica PE=4 SV=1 Length = 109
Score = 136 bits (343), Expect = 8e-31 Identities = 75/113 (66%), Positives = 80/113 (70%), Gaps = 2/113 (1%) Frame = +2
Query: 251 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRE--RYQIEANSEY*M*RSSKRNEGK 424 MPLEPRASWFSPKCVEAQQLT K F G + + N+ Y + G Sbjct: 1 MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRY-----DPKITGV 55
Query: 425 GSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP*KS 583 S SETM DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP KS Sbjct: 56 RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKS 108
>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1 Length = 102
Score = 129 bits (323), Expect = 2e-28 Identities = 70/108 (64%), Positives = 77/108 (71%) Frame = +2
Query: 251 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY*M*RSSKRNEGKGS 430 MPLEPRASWFSPKCVEAQQLT K F G E+ ++ +++ S Sbjct: 1 MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGR------ESGTKSRQTLNTRYPWRVKS 54
Query: 431 TSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP 574 SE M DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP Sbjct: 55 ASEAMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP 102
>tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035369001 PE=4 SV=1 Length = 235
Score = 77.0 bits (188), Expect(2) = 1e-19 Identities = 37/41 (90%), Positives = 38/41 (92%) Frame = -1
Query: 312 VNCCASTHFGENQLALGSSGISPLTTTHPLIFQHQSVRTST 190 VN CASTHFGENQLALGSS ISPLTTTHPLI QHQSV+TST Sbjct: 57 VNRCASTHFGENQLALGSSDISPLTTTHPLILQHQSVQTST 97
Score = 43.5 bits (101), Expect(2) = 1e-19 Identities = 18/23 (78%), Positives = 22/23 (95%) Frame = -3
Query: 388 VFRVCLDLVPLSQPAPERCFTPR 320 +FRVCLDLVPLS+PA ++CFTPR Sbjct: 32 MFRVCLDLVPLSRPALKQCFTPR 54
>tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1 Length = 46
Score = 87.4 bits (215), Expect = 5e-16 Identities = 42/46 (91%), Positives = 42/46 (91%) Frame = +2
Query: 251 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY 388 MPLEPRASWFSPKCVEAQQLT PSRGKA FR G RERYQIEANSEY Sbjct: 1 MPLEPRASWFSPKCVEAQQLTGPSRGKALFRYGPRERYQIEANSEY 46
>tr|A5ZTV7|A5ZTV7_9FIRM Putative uncharacterized protein OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_02439 PE=4 SV=1 Length = 199
Score = 79.3 bits (194), Expect = 1e-13 Identities = 43/80 (53%), Positives = 52/80 (65%) Frame = -2
Query: 326 P*MV*STAAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHP 147 P + + A+P+ IS RTS L VR+ F P P LI FN FGPPL T AS+W+WIDHP Sbjct: 11 PPQISTKASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPLTAASTWTWIDHP 70
Query: 146 GSGL*AVTIAPARLAFATAP 87 SGL +T+A RL F TAP Sbjct: 71 VSGLPPLTLALLRLGFPTAP 90
>tr|A5ZQM1|A5ZQM1_9FIRM Putative uncharacterized protein OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_01293 PE=4 SV=1 Length = 199
Score = 79.3 bits (194), Expect = 1e-13 Identities = 43/80 (53%), Positives = 52/80 (65%) Frame = -2
Query: 326 P*MV*STAAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHP 147 P + + A+P+ IS RTS L VR+ F P P LI FN FGPPL T AS+W+WIDHP Sbjct: 11 PPQISTKASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPLTAASTWTWIDHP 70
Query: 146 GSGL*AVTIAPARLAFATAP 87 SGL +T+A RL F TAP Sbjct: 71 VSGLPPLTLALLRLGFPTAP 90
>tr|A5KL06|A5KL06_9FIRM Putative uncharacterized protein OS=Ruminococcus torques ATCC 27756 GN=RUMTOR_00910 PE=4 SV=1 Length = 245
Score = 76.6 bits (187), Expect = 9e-13 Identities = 41/73 (56%), Positives = 48/73 (65%) Frame = -2
Query: 305 AAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHPGSGL*AV 126 A+P+ IS RTS L VR+ F P P LI FN FGPPL FT S+W+WIDHP SGL + Sbjct: 4 ASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPFTATSTWTWIDHPVSGLLRL 63
Query: 125 TIAPARLAFATAP 87 T A RL F +AP Sbjct: 64 TFALFRLGFPSAP 76
>tr|A7B8Q0|A7B8Q0_RUMGN Putative uncharacterized protein OS=Ruminococcus gnavus ATCC 29149 GN=RUMGNA_03973 PE=4 SV=1 Length = 81
Score = 71.6 bits (174), Expect(2) = 3e-12 Identities = 37/64 (57%), Positives = 44/64 (68%) Frame = -2
Query: 305 AAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHPGSGL*AV 126 A+P+ IS RTS L VR+ F P P LI FN FGPPL FT S+W+WIDHP SGL + Sbjct: 4 ASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPFTATSTWTWIDHPVSGLLRL 63
Query: 125 TIAP 114 TI+P Sbjct: 64 TISP 67
Score = 23.9 bits (50), Expect(2) = 3e-12 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -3
Query: 118 PQQDSLSLRLRGFSP 74 P DS+SLRL+ FSP Sbjct: 67 PCSDSVSLRLQAFSP 81
>tr|B1BC32|B1BC32_CLOBO Putative uncharacterized protein OS=Clostridium botulinum C str. Eklund GN=CBC_0457 PE=4 SV=1 Length = 93
Score = 45.4 bits (106), Expect(2) = 4e-10 Identities = 22/49 (44%), Positives = 29/49 (59%) Frame = -3
Query: 358 LSQPAPERCFTPRWSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADFST 212 +S P+P P + L L FRGEPA S F+W+F+ H+SS FST Sbjct: 1 MSAPSPFSALPPLLNYPTLALKLFRGEPAISEFDWNFSAIHSSSHGFST 49
Score = 42.7 bits (99), Expect(2) = 4e-10 Identities = 19/35 (54%), Positives = 21/35 (60%) Frame = -2
Query: 203 FGPPLSFTQASSWSWIDHPGSGL*AVTIAPARLAF 99 FGPP +FT ASSW WI H SGL T P + F Sbjct: 53 FGPPRNFTSASSWPWIGHSVSGLQYATSCPVQTRF 87
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