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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952960
Clone id TST38A01NGRL0015_I03
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_I03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GATGTTGCTCCCATTCCCGGCACCACCAAACAAAAGAATCTAGAGGAGAATGTGGGCGCG
TTTAATGTTAAGCTTTCGAAAGAAGATCTTGAAGAGCTGGAGTCCTTTTTTCACCTGAAT
TGTGCAGCGGGTGCGAGGTATTCAAATATGGCGATGACCACAATTGAGTCAGAGACAATC
CCCCTTTCGGAATGGCAGAGTAAGTAGATAATGTTGATGGAAAGGTATAGACAACAGTCA
GAGCTCAATGTGAGTGTGGAGCGTGGCAGCAACGAGGTCTCTGATTGTTACGGTGCTGTC
ATCTGGGCAACACCAGTGGATAGGATAACTGTCTAGATGCAAAACCATAATGGTTAACAC
ATGAATATCCGACTTGAGAAGTTGAATCTGATTATTGTCTAGATACATATTCATAATGGT
TGATACTATACATACCATACTTGGGAAGTTGAT
■■Homology search results ■■ -
sp_hit_id A6NM36
Definition sp|A6NM36|LRC30_HUMAN Leucine-rich repeat-containing protein 30 OS=Homo sapiens
Align length 36
Score (bit) 34.7
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952960|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_I03, 5'
         (453 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6NM36|LRC30_HUMAN Leucine-rich repeat-containing protein 30 ...    35   0.20 
sp|Q09923|YAKC_SCHPO Aldo-keto reductase yakc [NADP+] OS=Schizos...    33   0.44 
sp|Q6XHA6|ROC10_DICDI Probable inactive serine/threonine-protein...    32   1.7  
sp|P34848|NU2M_ANOGA NADH-ubiquinone oxidoreductase chain 2 OS=A...    32   1.7  
sp|Q3UV48|LRC30_MOUSE Leucine-rich repeat-containing protein 30 ...    30   4.9  
sp|P40691|A115_TOBAC Auxin-induced protein PCNT115 OS=Nicotiana ...    30   4.9  

>sp|A6NM36|LRC30_HUMAN Leucine-rich repeat-containing protein 30
           OS=Homo sapiens GN=LRRC30 PE=2 SV=1
          Length = 301

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = -1

Query: 450 NFPSMVCIVSTIMNMYLDNNQIQLLKSDIHVLTIMV 343
           +FP  +C+V+++  + L+NN IQ L S++H+L  +V
Sbjct: 223 SFPRSLCLVTSLELLNLNNNDIQTLPSELHLLCRLV 258


>sp|Q09923|YAKC_SCHPO Aldo-keto reductase yakc [NADP+]
           OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1
          Length = 340

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           D+ PIPGT + K LEEN GA  V                    GARY   A + I  +T 
Sbjct: 277 DILPIPGTKRVKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTP 336

Query: 181 PL 186
           P+
Sbjct: 337 PM 338


>sp|Q6XHA6|ROC10_DICDI Probable inactive serine/threonine-protein
            kinase roco10 OS=Dictyostelium discoideum GN=roco10 PE=3
            SV=1
          Length = 2646

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 450  NFPSMVCIVSTIMNMYLDNNQIQLLKSDIHVLTIMV 343
            + P  + +++ +  +YLDNNQ+Q + S IH +  ++
Sbjct: 1168 SLPPQLLLLTNLKKLYLDNNQLQSISSAIHRMQSLI 1203


>sp|P34848|NU2M_ANOGA NADH-ubiquinone oxidoreductase chain 2
           OS=Anopheles gambiae GN=mt:ND2 PE=3 SV=2
          Length = 341

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = -1

Query: 447 FPSMVCIVSTIMNMYLDNNQIQLLKS--DIHVLTIMVLHLDSYPIHWCCPD--DSTVTIR 280
           F S + + + IM M+L NN + L  S  +I +L+ ++L   + P H+  P+  +    + 
Sbjct: 66  FASSILLFAIIMLMFLYNNNLSLYNSFNEILILSTLLLKSGAAPFHFWFPEVMEGLSWVN 125

Query: 279 DLVAATLHTHIEL*LLSIPFHQHYLL 202
            L+  T      L L+S  F  ++ +
Sbjct: 126 GLILMTWQKIAPLMLISYNFIYNFFM 151


>sp|Q3UV48|LRC30_MOUSE Leucine-rich repeat-containing protein 30
           OS=Mus musculus GN=Lrrc30 PE=2 SV=1
          Length = 300

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -1

Query: 450 NFPSMVCIVSTIMNMYLDNNQIQLLKSDIHVL 355
           +FP  +C+V+++  + L+NN IQ L  ++++L
Sbjct: 222 SFPRSLCLVTSLELLNLNNNDIQTLPDELYLL 253


>sp|P40691|A115_TOBAC Auxin-induced protein PCNT115 OS=Nicotiana
           tabacum PE=2 SV=1
          Length = 307

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENV 54
           DV PIPGTTK +NL +N+
Sbjct: 284 DVCPIPGTTKIENLNQNM 301
tr_hit_id A9NPE7
Definition tr|A9NPE7|A9NPE7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 66
Score (bit) 60.1
E-value 5.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952960|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_I03, 5'
         (453 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NPE7|A9NPE7_PICSI Putative uncharacterized protein OS=Picea...    60   5e-08
tr|A9NK40|A9NK40_PICSI Putative uncharacterized protein OS=Picea...    60   5e-08
tr|O22627|O22627_HELAN Auxin-induced protein OS=Helianthus annuu...    55   2e-06
tr|Q9SEX1|Q9SEX1_ARATH Auxin-induced atb2 OS=Arabidopsis thalian...    54   5e-06
tr|Q93ZN2|Q93ZN2_ARATH At1g60710/F8A5_23 (Putative uncharacteriz...    54   5e-06
tr|B8LMK3|B8LMK3_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|O22712|O22712_ARATH F8A5.26 protein OS=Arabidopsis thaliana G...    52   1e-05
tr|B6TD84|B6TD84_MAIZE Auxin-induced protein PCNT115 OS=Zea mays...    52   2e-05
tr|B6SMW2|B6SMW2_MAIZE IN2-2 protein OS=Zea mays PE=2 SV=1             52   2e-05
tr|B4FSC8|B4FSC8_MAIZE Putative uncharacterized protein OS=Zea m...    52   2e-05
tr|Q3LVN6|Q3LVN6_TAROF TO41-23rc (Fragment) OS=Taraxacum officin...    51   3e-05
tr|Q9SAC2|Q9SAC2_ARATH T16B5.5 protein OS=Arabidopsis thaliana G...    51   3e-05
tr|Q9C5B9|Q9C5B9_ARATH Putative auxin-induced protein OS=Arabido...    51   3e-05
tr|Q67YQ4|Q67YQ4_ARATH Putative auxin-induced protein OS=Arabido...    51   3e-05
tr|Q42146|Q42146_ARATH Auxin-induced protein (Fragment) OS=Arabi...    50   4e-05
tr|A3ASI0|A3ASI0_ORYSJ Putative uncharacterized protein OS=Oryza...    50   4e-05
tr|Q01KU9|Q01KU9_ORYSA OSIGBa0115A19.3 protein OS=Oryza sativa G...    50   6e-05
tr|A9NQB7|A9NQB7_PICSI Putative uncharacterized protein OS=Picea...    50   6e-05
tr|A2XRY9|A2XRY9_ORYSI Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|A5B6W5|A5B6W5_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|A9PGV9|A9PGV9_POPTR Putative uncharacterized protein OS=Popul...    49   1e-04
tr|A7Q9M0|A7Q9M0_VITVI Chromosome chr5 scaffold_67, whole genome...    49   1e-04
tr|Q7XT99|Q7XT99_ORYSJ Os04g0338000 protein OS=Oryza sativa subs...    49   2e-04
tr|Q01KU8|Q01KU8_ORYSA OSIGBa0115A19.4 protein OS=Oryza sativa G...    49   2e-04
tr|A3ASH9|A3ASH9_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A2XRZ0|A2XRZ0_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|Q7XQ45|Q7XQ45_ORYSJ Os04g0339400 protein OS=Oryza sativa subs...    48   2e-04
tr|Q52QX9|Q52QX9_MANES Aldo/keto reductase AKR OS=Manihot escule...    48   2e-04
tr|Q01LN8|Q01LN8_ORYSA H0813E03.4 protein OS=Oryza sativa GN=H08...    48   2e-04
tr|A7Q9M3|A7Q9M3_VITVI Chromosome chr5 scaffold_67, whole genome...    48   2e-04

>tr|A9NPE7|A9NPE7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 348

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 33/66 (50%), Positives = 37/66 (56%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DVAPIPGTTK KNLEEN+GA +V                    G RYS+M  T + SET 
Sbjct: 280 DVAPIPGTTKVKNLEENIGALSVELTPLEMKEIEDSVCSAGVFGDRYSDMGSTWMNSETP 339

Query: 181 PLSEWQ 198
           PLS WQ
Sbjct: 340 PLSSWQ 345


>tr|A9NK40|A9NK40_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 348

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 32/67 (47%), Positives = 37/67 (55%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DVAPIPGTTK KNLEEN+GA +V                    G RY +M  T + SET 
Sbjct: 280 DVAPIPGTTKVKNLEENIGALSVELTPLETKEIEDLVSSAGVFGDRYGDMDFTWMNSETP 339

Query: 181 PLSEWQS 201
           PLS WQ+
Sbjct: 340 PLSSWQA 346


>tr|O22627|O22627_HELAN Auxin-induced protein OS=Helianthus annuus
           GN=HaAC1 PE=2 SV=1
          Length = 338

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 30/67 (44%), Positives = 39/67 (58%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DV PIPGTTK +NLE+N+GA +V              HL    GAR +    T ++SET+
Sbjct: 274 DVVPIPGTTKIENLEQNIGALSVKITPEEMAELESTTHL--VKGARCNAGTPTYLDSETL 331

Query: 181 PLSEWQS 201
           PLS W+S
Sbjct: 332 PLSSWKS 338


>tr|Q9SEX1|Q9SEX1_ARATH Auxin-induced atb2 OS=Arabidopsis thaliana
           GN=ATB2 PE=2 SV=1
          Length = 345

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 28/67 (41%), Positives = 36/67 (53%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DV PIPGTTK +NL++N+GA +V                    G RYSNM  T   +ET 
Sbjct: 278 DVCPIPGTTKIENLKQNIGALSVKLTPEEMTELEAIAQPGFVKGDRYSNMIPTFKNAETP 337

Query: 181 PLSEWQS 201
           PLS W++
Sbjct: 338 PLSAWKA 344


>tr|Q93ZN2|Q93ZN2_ARATH At1g60710/F8A5_23 (Putative uncharacterized
           protein) (Auxin-induced protein, putative)
           OS=Arabidopsis thaliana GN=At1g60710 PE=2 SV=1
          Length = 345

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 28/67 (41%), Positives = 36/67 (53%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DV PIPGTTK +NL++N+GA +V                    G RYSNM  T   +ET 
Sbjct: 278 DVCPIPGTTKIENLKQNIGALSVKLTPEEMTELEAIAQPGFVKGDRYSNMIPTFKNAETP 337

Query: 181 PLSEWQS 201
           PLS W++
Sbjct: 338 PLSAWKA 344


>tr|B8LMK3|B8LMK3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 345

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 31/66 (46%), Positives = 35/66 (53%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DVAPIPGTTK KNLEEN+GA +V               L C+AG          I +ET 
Sbjct: 280 DVAPIPGTTKVKNLEENIGALSVELTPLEMKEIE---DLVCSAGVFGDRYTDPWINAETP 336

Query: 181 PLSEWQ 198
           PLS WQ
Sbjct: 337 PLSSWQ 342


>tr|O22712|O22712_ARATH F8A5.26 protein OS=Arabidopsis thaliana
           GN=F8A5.26 PE=4 SV=1
          Length = 374

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 26/68 (38%), Positives = 37/68 (54%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DV PIPGT+K +NL +N+GA +V                +   G RY N  +T  +SET 
Sbjct: 307 DVCPIPGTSKIQNLNQNIGALSVKLTPEEMVELEAIAQPDFVKGERYDNNMVTYKDSETP 366

Query: 181 PLSEWQSK 204
           PLS W+++
Sbjct: 367 PLSSWKAR 374


>tr|B6TD84|B6TD84_MAIZE Auxin-induced protein PCNT115 OS=Zea mays
           PE=2 SV=1
          Length = 346

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 29/68 (42%), Positives = 35/68 (51%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DV PIPGTTK +N  +NVGA +V                    G RY  MA T  +SET 
Sbjct: 279 DVCPIPGTTKIENFNQNVGALSVKLTPDEMAELESCAAAGEILGDRYPQMANTWKDSETP 338

Query: 181 PLSEWQSK 204
           PLS W+S+
Sbjct: 339 PLSSWKSE 346


>tr|B6SMW2|B6SMW2_MAIZE IN2-2 protein OS=Zea mays PE=2 SV=1
          Length = 254

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 29/68 (42%), Positives = 35/68 (51%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DV PIPGTTK +N  +NVGA +V                    G RY  MA T  +SET 
Sbjct: 187 DVCPIPGTTKIENFNQNVGALSVKLTPDEMAELESCAAAGEILGDRYPQMANTWKDSETP 246

Query: 181 PLSEWQSK 204
           PLS W+S+
Sbjct: 247 PLSSWKSE 254


>tr|B4FSC8|B4FSC8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 319

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 29/68 (42%), Positives = 35/68 (51%)
 Frame = +1

Query: 1   DVAPIPGTTKQKNLEENVGAFNVXXXXXXXXXXXXFFHLNCAAGARYSNMAMTTIESETI 180
           DV PIPGTTK +N  +NVGA +V                    G RY  MA T  +SET 
Sbjct: 252 DVCPIPGTTKIENFNQNVGALSVKLTPDEMAELESCAAAGEILGDRYPQMANTWKDSETP 311

Query: 181 PLSEWQSK 204
           PLS W+S+
Sbjct: 312 PLSSWKSE 319