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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952972
Clone id TST38A01NGRL0015_I15
Library
Length 325
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_I15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AGCTAATTGATTTAACTGATGTATAAGAGAACAGAATTGTTAATGATGGTGTCAATGCCA
AGCTTCTTGGATGCCATGGATTGCTTTCTGCAAGGAAGCCAGGAAGAGCGTTTCTGTCAG
CTGCTGTTTCTGCATGAAATGTCTGTACTCTGGGAATGACAATATAAGCCTGAACGCAGA
TGCAAAATGAAATTTTGATTTAAAGACATTAGCATGATGTAGAGGATATTGACTTTTTAA
GTTTGGGAGAGTTTTATGGTTCCACCTTTTTTCTTCTTTAAGAGGTTGCCCTCCTCATTG
TCCTAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40592
Definition sp|Q40592|RL10_TOBAC 60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum
Align length 32
Score (bit) 58.2
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952972|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_I15, 5'
         (304 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40592|RL10_TOBAC 60S ribosomal protein L10 (Fragment) OS=Nic...    58   1e-08
sp|Q0DKF0|RL102_ORYSJ 60S ribosomal protein L10-2 OS=Oryza sativ...    57   3e-08
sp|A2Y0T4|RL102_ORYSI 60S ribosomal protein L10-2 OS=Oryza sativ...    57   3e-08
sp|Q9M5M7|RL10_EUPES 60S ribosomal protein L10 OS=Euphorbia esul...    55   8e-08
sp|P93847|RL10_SOLME 60S ribosomal protein L10 OS=Solanum melong...    54   2e-07
sp|O22431|RL10_PINTA 60S ribosomal protein L10 OS=Pinus taeda GN...    53   5e-07
sp|Q9SPB3|RL10_VITRI 60S ribosomal protein L10 OS=Vitis riparia ...    52   1e-06
sp|Q08770|RL102_ARATH 60S ribosomal protein L10-2 OS=Arabidopsis...    49   1e-05
sp|Q0ITS8|RL101_ORYSJ 60S ribosomal protein L10-1 OS=Oryza sativ...    48   2e-05
sp|A2ZCQ7|RL101_ORYSI 60S ribosomal protein L10-1 OS=Oryza sativ...    48   2e-05
sp|Q93VT9|RL101_ARATH 60S ribosomal protein L10-1 OS=Arabidopsis...    46   5e-05
sp|P45633|RL10_MAIZE 60S ribosomal protein L10 OS=Zea mays GN=RP...    45   1e-04
sp|Q93W22|RL103_ARATH 60S ribosomal protein L10-3 OS=Arabidopsis...    41   0.002
sp|O66624|Y267_AQUAE Uncharacterized protein aq_267 OS=Aquifex a...    33   0.58 
sp|Q8WXG9|GPR98_HUMAN G-protein coupled receptor 98 OS=Homo sapi...    29   8.4  

>sp|Q40592|RL10_TOBAC 60S ribosomal protein L10 (Fragment)
           OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1
          Length = 150

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSA 122
           ENRIV DGVNAKLLGCHG L+AR+PGRAFL A
Sbjct: 116 ENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147


>sp|Q0DKF0|RL102_ORYSJ 60S ribosomal protein L10-2 OS=Oryza sativa
           subsp. japonica GN=SG12 PE=2 SV=1
          Length = 219

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAA 125
           E RI+ DGVNAKLLGCHG LSAR PG+AFLSAA
Sbjct: 187 EGRIMPDGVNAKLLGCHGRLSARAPGKAFLSAA 219


>sp|A2Y0T4|RL102_ORYSI 60S ribosomal protein L10-2 OS=Oryza sativa
           subsp. indica GN=SG12 PE=2 SV=2
          Length = 219

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAA 125
           E RI+ DGVNAKLLGCHG LSAR PG+AFLSAA
Sbjct: 187 EGRIMPDGVNAKLLGCHGRLSARAPGKAFLSAA 219


>sp|Q9M5M7|RL10_EUPES 60S ribosomal protein L10 OS=Euphorbia esula
           GN=RPL10 PE=2 SV=1
          Length = 220

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSA 122
           ENRI+ DGVNAKLLGCHG L+ RKPGRAF+ A
Sbjct: 187 ENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218


>sp|P93847|RL10_SOLME 60S ribosomal protein L10 OS=Solanum melongena
           GN=RPL10 PE=2 SV=1
          Length = 219

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAA 125
           ENRIV DGVNAKLLG HG L+AR+PGRAFLS++
Sbjct: 187 ENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219


>sp|O22431|RL10_PINTA 60S ribosomal protein L10 OS=Pinus taeda
           GN=RPL10 PE=2 SV=1
          Length = 228

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 26/34 (76%), Positives = 27/34 (79%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAAV 128
           ENRIV DGVN KLLGC G LS RKPG+AFL  AV
Sbjct: 187 ENRIVPDGVNPKLLGCRGPLSNRKPGQAFLKPAV 220


>sp|Q9SPB3|RL10_VITRI 60S ribosomal protein L10 OS=Vitis riparia
           GN=RPL10 PE=2 SV=1
          Length = 220

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 22/32 (68%), Positives = 29/32 (90%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSA 122
           +NRI+ DGVNAKLLGCHG L+ R+PG+AF++A
Sbjct: 187 QNRILPDGVNAKLLGCHGPLANRQPGKAFINA 218


>sp|Q08770|RL102_ARATH 60S ribosomal protein L10-2 OS=Arabidopsis
           thaliana GN=RPL10B PE=2 SV=2
          Length = 221

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 25/32 (78%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSA 122
           E RIV DGVNAK L CHG L+ R+PG AFLSA
Sbjct: 187 EKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218


>sp|Q0ITS8|RL101_ORYSJ 60S ribosomal protein L10-1 OS=Oryza sativa
           subsp. japonica GN=SC34 PE=2 SV=1
          Length = 224

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAAVSA 134
           E RI++DGVNA+LLG HG L+ R PG+AFL+  + A
Sbjct: 187 EGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAETIQA 222


>sp|A2ZCQ7|RL101_ORYSI 60S ribosomal protein L10-1 OS=Oryza sativa
           subsp. indica GN=SC34 PE=2 SV=2
          Length = 224

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAAVSA 134
           E RI++DGVNA+LLG HG L+ R PG+AFL+  + A
Sbjct: 187 EGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAETIQA 222
tr_hit_id B3TLM0
Definition tr|B3TLM0|B3TLM0_ELAGV QM-like protein OS=Elaeis guineensis var. tenera
Align length 35
Score (bit) 61.2
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952972|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_I15, 5'
         (304 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3TLM0|B3TLM0_ELAGV QM-like protein OS=Elaeis guineensis var....    61   2e-08
tr|Q3SC85|Q3SC85_SOLLC 60S ribosomal protein L10 OS=Solanum lyco...    60   7e-08
tr|Q38HS5|Q38HS5_SOLTU 60S ribosomal protein L10-like protein OS...    60   7e-08
tr|Q9FUN3|Q9FUN3_ELAGV QM-like protein OS=Elaeis guineensis var....    59   2e-07
tr|A7QTC5|A7QTC5_VITVI Chromosome chr1 scaffold_166, whole genom...    58   2e-07
tr|B8AYH0|B8AYH0_ORYSI Putative uncharacterized protein OS=Oryza...    57   5e-07
tr|B7EBT7|B7EBT7_ORYSJ cDNA clone:002-188-A02, full insert seque...    57   5e-07
tr|A9PGG5|A9PGG5_POPTR Putative uncharacterized protein OS=Popul...    56   1e-06
tr|B7FGF8|B7FGF8_MEDTR Putative uncharacterized protein OS=Medic...    55   2e-06
tr|A9TWJ0|A9TWJ0_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|A9RQA3|A9RQA3_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|A9RCU9|A9RCU9_PHYPA Predicted protein (Fragment) OS=Physcomit...    55   2e-06
tr|A9U2S2|A9U2S2_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|A7NXZ2|A7NXZ2_VITVI Chromosome chr6 scaffold_3, whole genome ...    53   9e-06
tr|A9NPT9|A9NPT9_PICSI Putative uncharacterized protein OS=Picea...    52   2e-05
tr|A9P8W6|A9P8W6_POPTR Putative uncharacterized protein OS=Popul...    51   2e-05
tr|A9NPP8|A9NPP8_PICSI Putative uncharacterized protein OS=Picea...    51   2e-05
tr|Q2HIH6|Q2HIH6_ARATH At1g26910 OS=Arabidopsis thaliana PE=2 SV=1     49   2e-04
tr|B7E5G0|B7E5G0_ORYSJ cDNA clone:001-035-D11, full insert seque...    48   3e-04
tr|B6UGR9|B6UGR9_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P...    47   5e-04
tr|B6TD86|B6TD86_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P...    47   5e-04
tr|B6TAQ2|B6TAQ2_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P...    47   5e-04
tr|B6T5B9|B6T5B9_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P...    47   5e-04
tr|B4FPT8|B4FPT8_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P...    47   5e-04
tr|Q93VL0|Q93VL0_ARATH At1g14320/F14L17_28 OS=Arabidopsis thalia...    46   8e-04
tr|Q10LW7|Q10LW7_ORYSJ 60S ribosomal protein L10, putative, expr...    39   0.13 
tr|Q0DS57|Q0DS57_ORYSJ Os03g0332500 protein OS=Oryza sativa subs...    39   0.13 
tr|A2XGB9|A2XGB9_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.13 
tr|Q6DV76|Q6DV76_9FABA QM family protein OS=Caragana jubata GN=Q...    36   0.83 
tr|Q6DV42|Q6DV42_CAMSI QM-like protein OS=Camellia sinensis PE=2...    36   0.83 

>tr|B3TLM0|B3TLM0_ELAGV QM-like protein OS=Elaeis guineensis var.
           tenera PE=2 SV=1
          Length = 224

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 28/35 (80%), Positives = 33/35 (94%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAAVS 131
           ENRI+ DGVNAKLLGCHG L+AR+PG+AFLSAAV+
Sbjct: 187 ENRIIPDGVNAKLLGCHGPLAARQPGKAFLSAAVT 221


>tr|Q3SC85|Q3SC85_SOLLC 60S ribosomal protein L10 OS=Solanum
           lycopersicum GN=ACI29 PE=2 SV=1
          Length = 220

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAA 125
           ENRIV DGVNAKLLGCHG L+AR+PGRAFL AA
Sbjct: 187 ENRIVPDGVNAKLLGCHGRLAARQPGRAFLEAA 219


>tr|Q38HS5|Q38HS5_SOLTU 60S ribosomal protein L10-like protein
           OS=Solanum tuberosum PE=2 SV=1
          Length = 220

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAA 125
           ENRIV DGVNAKLLGCHG L+AR+PGRAFL AA
Sbjct: 187 ENRIVPDGVNAKLLGCHGRLAARQPGRAFLEAA 219


>tr|Q9FUN3|Q9FUN3_ELAGV QM-like protein OS=Elaeis guineensis var.
           tenera PE=2 SV=1
          Length = 224

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAAVS 131
           ENRIV DGVNAKLLGCHG LSAR+PGRAFL   ++
Sbjct: 187 ENRIVPDGVNAKLLGCHGRLSARQPGRAFLPPTIA 221


>tr|A7QTC5|A7QTC5_VITVI Chromosome chr1 scaffold_166, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006249001
           PE=4 SV=1
          Length = 224

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAAVSA 134
           ENRI+ DGVNAKLLGCHG L+ R+PGRAFLS AV +
Sbjct: 187 ENRIMPDGVNAKLLGCHGPLAQRQPGRAFLSGAVES 222


>tr|B8AYH0|B8AYH0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18615 PE=4 SV=1
          Length = 224

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAA 125
           E RI+ DGVNAKLLGCHG LSAR PG+AFLSAA
Sbjct: 192 EGRIMPDGVNAKLLGCHGRLSARAPGKAFLSAA 224


>tr|B7EBT7|B7EBT7_ORYSJ cDNA clone:002-188-A02, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 219

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAA 125
           E RI+ DGVNAKLLGCHG LSAR PG+AFLSAA
Sbjct: 187 EGRIMPDGVNAKLLGCHGRLSARAPGKAFLSAA 219


>tr|A9PGG5|A9PGG5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 220

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 25/32 (78%), Positives = 30/32 (93%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSA 122
           EN+I++DGVNAKLLGCHG L+ R+PGRAFLSA
Sbjct: 187 ENKIMSDGVNAKLLGCHGPLANRQPGRAFLSA 218


>tr|B7FGF8|B7FGF8_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 224

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAA 125
           ENRI+ DGVNAKLLGCHG L+ R+PGRAFL+A+
Sbjct: 187 ENRIMPDGVNAKLLGCHGPLANRQPGRAFLTAS 219


>tr|A9TWJ0|A9TWJ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172372 PE=4 SV=1
          Length = 223

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +3

Query: 27  ENRIVNDGVNAKLLGCHGLLSARKPGRAFLSAAVS 131
           ENR+VNDGV AKLLGCHG L+ R  GRAF+ AAV+
Sbjct: 187 ENRLVNDGVTAKLLGCHGPLAQRSAGRAFIDAAVA 221