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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952976
Clone id TST38A01NGRL0015_I19
Library
Length 762
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_I19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCAAACATCATCTTCCCGATCATTAGGGCAGAGGGTGTCCGGCAAATGTTCTTCCCCAAC
ACAATTCCAGCTTATTACAAAGCACCTCCTGCAGAATGCATGAGCACATTTTCTGCCAAG
GACCATGCGAAGGTCAATTCAATCAAACTGAGCAATGAGCAGCTGTACTAGTGAGTGGCG
CAAGCCGATTCAAAACGAAAAATCATGTTAAAGATGATGCAGTGTCGCACATGAACTGAA
AGTAGGCTGAAGACTCTTCCTTCAAACCTGCATGAGTGGTGTCTCAAAGGCAGAAGTCCT
CAAGTTTAGAACAATCTGACCATGAAGGATATATACAGAAGATGCACTTCCTCGTTAATT
GAAACATCCATGGTTGCCTGTCCTAAAGGATGAAATGATTTAATCCAATCAGCCCATCAA
AAAGCAATGCCAAAACATATCCACCCTAGCCTTCCTCTTTGGTCAAGCTCCTAGCGTGAA
GAGTTGTTGCCCTTGTGTAATGCCATGACAATTTGTTATGTGCAAAAACTATAAAACCTA
CGATTAATCCATGCGTTAAGAGGCCCATCCTCAGAGAGACTAGATTGTAGAACTATTATG
TGATACAACGTCATTGTTCGTCGGCTATCAACTTCTAAGTAAGATAAAGAAGGCTTCCAT
CCATCCCAAAGTAGCCCTATTTTTTCAATGTTTGATGTGGTTCTAATCCTAGTAATTTGT
CCTCAATTCCTTCATTTATTTTAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O48651
Definition sp|O48651|ERG1_PANGI Squalene monooxygenase OS=Panax ginseng
Align length 30
Score (bit) 52.4
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952976|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_I19, 5'
         (742 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O48651|ERG1_PANGI Squalene monooxygenase OS=Panax ginseng PE=...    52   3e-06
sp|Q6G041|UVRC_BARQU UvrABC system protein C OS=Bartonella quint...    33   2.1  
sp|Q1RH45|RECR_RICBR Recombination protein recR OS=Rickettsia be...    31   6.2  
sp|A8GUU1|RECR_RICB8 Recombination protein recR OS=Rickettsia be...    31   6.2  
sp|Q3J7V7|GATA_NITOC Glutamyl-tRNA(Gln) amidotransferase subunit...    31   6.2  
sp|Q96BQ3|TRI43_HUMAN Tripartite motif-containing protein 43 OS=...    31   8.1  
sp|A6NCK2|T43L1_HUMAN Tripartite motif-containing protein 43-lik...    31   8.1  

>sp|O48651|ERG1_PANGI Squalene monooxygenase OS=Panax ginseng PE=2
           SV=1
          Length = 539

 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 21/30 (70%), Positives = 27/30 (90%)
 Frame = +1

Query: 1   ANIIFPIIRAEGVRQMFFPNTIPAYYKAPP 90
           + IIFPII++EG+RQMFFP  +PAYY+APP
Sbjct: 508 SGIIFPIIKSEGLRQMFFPAIVPAYYRAPP 537


>sp|Q6G041|UVRC_BARQU UvrABC system protein C OS=Bartonella quintana
           GN=uvrC PE=3 SV=1
          Length = 678

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 90  CRMHEHIFCQGPCEGQFNQTEQ*AAVLVSGASRFKT--KNHVKDDAVSHMN*K*AEDSSF 263
           C +++   C  PC  + N+ +     LV GA  F +     VK+D +  M+ K AED  F
Sbjct: 220 CLLYQIKRCSAPCTHEINENDY--RELVRGAKAFLSGKSQSVKNDMIQAMH-KAAEDLDF 276

Query: 264 KPA*VVSQRQKSSSLEQSDHEG 329
           + A V   R  + S  QS H+G
Sbjct: 277 EQAAVYRDRLSALSHIQS-HQG 297


>sp|Q1RH45|RECR_RICBR Recombination protein recR OS=Rickettsia
           bellii (strain RML369-C) GN=recR PE=3 SV=1
          Length = 200

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +1

Query: 190 SKRKIMLKMMQCRT*TESRLKTLPSNLHEWCLKGRSPQV*NNLTMKDIYRRCTSSLIETS 369
           S R+I+L ++Q +   + RLKTL +NL E   K    QV  N+  ++I   CTS   + S
Sbjct: 25  SARRIVLYLLQDK---DVRLKTLINNLTEIDKKIVKCQVCGNMDTENICGICTSEYRDKS 81

Query: 370 MVA 378
           ++A
Sbjct: 82  VIA 84


>sp|A8GUU1|RECR_RICB8 Recombination protein recR OS=Rickettsia
           bellii (strain OSU 85-389) GN=recR PE=3 SV=1
          Length = 200

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +1

Query: 190 SKRKIMLKMMQCRT*TESRLKTLPSNLHEWCLKGRSPQV*NNLTMKDIYRRCTSSLIETS 369
           S R+I+L ++Q +   + RLKTL +NL E   K    QV  N+  ++I   CTS   + S
Sbjct: 25  SARRIVLYLLQDK---DVRLKTLINNLTEIDKKIVKCQVCGNMDTENICGICTSEYRDKS 81

Query: 370 MVA 378
           ++A
Sbjct: 82  VIA 84


>sp|Q3J7V7|GATA_NITOC Glutamyl-tRNA(Gln) amidotransferase subunit A
           OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
           11848) GN=gatA PE=3 SV=1
          Length = 483

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +1

Query: 37  VRQMFFPNT---IPAYYKAPPAECMSTFSAKD 123
           +R++  PNT   +P YY   PAEC S  S  D
Sbjct: 291 IREISLPNTKLAVPTYYVVAPAECSSNLSRYD 322


>sp|Q96BQ3|TRI43_HUMAN Tripartite motif-containing protein 43
           OS=Homo sapiens GN=TRIM43 PE=2 SV=1
          Length = 446

 Score = 30.8 bits (68), Expect = 8.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 108 CAHAFCRRCFVISWNCVGEEHLPDTLCPNDRE 13
           C H+FCR C  +SW    EE      CP  RE
Sbjct: 30  CGHSFCRPCLCLSW----EEAQSPANCPACRE 57


>sp|A6NCK2|T43L1_HUMAN Tripartite motif-containing protein 43-like
           protein 1 OS=Homo sapiens PE=3 SV=2
          Length = 449

 Score = 30.8 bits (68), Expect = 8.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 108 CAHAFCRRCFVISWNCVGEEHLPDTLCPNDRE 13
           C H+FCR C  +SW    EE      CP  RE
Sbjct: 30  CGHSFCRPCLCLSW----EEAQSPANCPACRE 57
tr_hit_id A9TRU6
Definition tr|A9TRU6|A9TRU6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 32
Score (bit) 65.9
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952976|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_I19, 5'
         (742 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TRU6|A9TRU6_PHYPA Predicted protein OS=Physcomitrella paten...    66   3e-09
tr|A9NW92|A9NW92_PICSI Putative uncharacterized protein OS=Picea...    62   4e-08
tr|A7R1V6|A7R1V6_VITVI Chromosome chr7 scaffold_382, whole genom...    58   6e-07
tr|A5ANV4|A5ANV4_VITVI Putative uncharacterized protein OS=Vitis...    58   6e-07
tr|A7NUD3|A7NUD3_VITVI Chromosome chr18 scaffold_1, whole genome...    57   1e-06
tr|A5AMJ1|A5AMJ1_VITVI Putative uncharacterized protein OS=Vitis...    57   1e-06
tr|Q506K3|Q506K3_DATIN Squalene monooxygenase OS=Datura innoxia ...    57   1e-06
tr|Q8GTX8|Q8GTX8_ORYSJ Putative Squalene monooxygenase (Putative...    57   2e-06
tr|Q4A570|Q4A570_SOLLC Putative squalene epoxidase OS=Solanum ly...    57   2e-06
tr|Q10PK6|Q10PK6_ORYSJ Squalene monooxygenase, putative, express...    57   2e-06
tr|Q10PK5|Q10PK5_ORYSJ Os03g0231700 protein OS=Oryza sativa subs...    57   2e-06
tr|Q10PK4|Q10PK4_ORYSJ Squalene monooxygenase, putative, express...    57   2e-06
tr|A2XE79|A2XE79_ORYSI Putative uncharacterized protein OS=Oryza...    57   2e-06
tr|Q9T064|Q9T064_ARATH Squalene epoxidase-like protein OS=Arabid...    56   3e-06
tr|Q8VYH2|Q8VYH2_ARATH AT4g37760/T28I19_40 (Putative uncharacter...    56   3e-06
tr|Q8LFJ1|Q8LFJ1_ARATH Squalene epoxidase-like protein OS=Arabid...    56   3e-06
tr|B7TWW5|B7TWW5_PANGI Squalene epoxidase (Fragment) OS=Panax gi...    56   3e-06
tr|O81000|O81000_ARATH Putative squalene epoxidase OS=Arabidopsi...    55   4e-06
tr|A7QGY6|A7QGY6_VITVI Chromosome chr3 scaffold_95, whole genome...    55   4e-06
tr|A7QGY7|A7QGY7_VITVI Chromosome chr3 scaffold_95, whole genome...    55   5e-06
tr|Q75W20|Q75W20_PANGI Squalene epoxidase OS=Panax ginseng PE=2 ...    55   6e-06
tr|Q1PID4|Q1PID4_9APIA Squalene epoxidase OS=Panax notoginseng P...    55   6e-06
tr|Q1KSF9|Q1KSF9_9APIA Squalene epoxidase OS=Panax notoginseng P...    55   6e-06
tr|Q8GSM9|Q8GSM9_MEDTR Squalene monooxygenase 2 OS=Medicago trun...    54   8e-06
tr|Q8GSM8|Q8GSM8_MEDTR Squalene monooxygenase 1 OS=Medicago trun...    54   8e-06
tr|Q2HY08|Q2HY08_MEDSA Squalene epoxidase OS=Medicago sativa GN=...    54   8e-06
tr|B6V3J2|B6V3J2_9MAGN Squalene epoxidase 1 OS=Nigella sativa GN...    52   3e-05
tr|Q8GTX7|Q8GTX7_ORYSJ Putative Squalene monooxygenase (Putative...    52   4e-05
tr|Q10PK2|Q10PK2_ORYSJ Squalene monooxygenase, putative, express...    52   4e-05
tr|Q0DTR1|Q0DTR1_ORYSJ Os03g0231800 protein OS=Oryza sativa subs...    52   4e-05

>tr|A9TRU6|A9TRU6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_224792 PE=4 SV=1
          Length = 504

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 29/32 (90%), Positives = 31/32 (96%)
 Frame = +1

Query: 1   ANIIFPIIRAEGVRQMFFPNTIPAYYKAPPAE 96
           ANIIFPII+AEGVRQMFFPN +PAYYKAPPAE
Sbjct: 472 ANIIFPIIKAEGVRQMFFPNMVPAYYKAPPAE 503


>tr|A9NW92|A9NW92_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 529

 Score = 62.0 bits (149), Expect = 4e-08
 Identities = 25/30 (83%), Positives = 30/30 (100%)
 Frame = +1

Query: 1   ANIIFPIIRAEGVRQMFFPNTIPAYYKAPP 90
           +NIIFPII+AEG+RQMFFPNT+PAYY+APP
Sbjct: 490 SNIIFPIIKAEGIRQMFFPNTVPAYYRAPP 519


>tr|A7R1V6|A7R1V6_VITVI Chromosome chr7 scaffold_382, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00012453001
           PE=4 SV=1
          Length = 522

 Score = 58.2 bits (139), Expect = 6e-07
 Identities = 25/32 (78%), Positives = 31/32 (96%)
 Frame = +1

Query: 1   ANIIFPIIRAEGVRQMFFPNTIPAYYKAPPAE 96
           ++IIFPII+AEGVRQMFFP T+PAYY+APPA+
Sbjct: 491 SSIIFPIIKAEGVRQMFFPVTMPAYYRAPPAK 522


>tr|A5ANV4|A5ANV4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_021785 PE=4 SV=1
          Length = 512

 Score = 58.2 bits (139), Expect = 6e-07
 Identities = 25/32 (78%), Positives = 31/32 (96%)
 Frame = +1

Query: 1   ANIIFPIIRAEGVRQMFFPNTIPAYYKAPPAE 96
           ++IIFPII+AEGVRQMFFP T+PAYY+APPA+
Sbjct: 481 SSIIFPIIKAEGVRQMFFPVTMPAYYRAPPAK 512


>tr|A7NUD3|A7NUD3_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015002001
           PE=4 SV=1
          Length = 523

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +1

Query: 1   ANIIFPIIRAEGVRQMFFPNTIPAYYKAPPAE 96
           + IIFPII+AEGVRQMFFP T+PAYY+APP +
Sbjct: 492 SGIIFPIIKAEGVRQMFFPATVPAYYRAPPVK 523


>tr|A5AMJ1|A5AMJ1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034139 PE=4 SV=1
          Length = 175

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +1

Query: 1   ANIIFPIIRAEGVRQMFFPNTIPAYYKAPPAE 96
           + IIFPII+AEGVRQMFFP T+PAYY+APP +
Sbjct: 144 SGIIFPIIKAEGVRQMFFPATVPAYYRAPPVK 175


>tr|Q506K3|Q506K3_DATIN Squalene monooxygenase OS=Datura innoxia
           PE=2 SV=1
          Length = 529

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = +1

Query: 7   IIFPIIRAEGVRQMFFPNTIPAYYKAPP 90
           IIFPII+AEGVRQMFFP TIPAYY+APP
Sbjct: 498 IIFPIIKAEGVRQMFFPATIPAYYRAPP 525


>tr|Q8GTX8|Q8GTX8_ORYSJ Putative Squalene monooxygenase (Putative
           uncharacterized protein) (Squalene monooxygenase,
           putative, expressed) OS=Oryza sativa subsp. japonica
           GN=OJ1017C11.7 PE=4 SV=1
          Length = 522

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +1

Query: 7   IIFPIIRAEGVRQMFFPNTIPAYYKAPP 90
           IIFPII+AEGVRQMFFP T+PAYY+APP
Sbjct: 492 IIFPIIKAEGVRQMFFPATVPAYYRAPP 519


>tr|Q4A570|Q4A570_SOLLC Putative squalene epoxidase OS=Solanum
           lycopersicum GN=ERG PE=4 SV=1
          Length = 552

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +1

Query: 1   ANIIFPIIRAEGVRQMFFPNTIPAYYKAPPAECMS 105
           + IIFPII+AEG+RQMFFP TIPAY++APP +  S
Sbjct: 517 SGIIFPIIKAEGIRQMFFPTTIPAYHRAPPVKTES 551


>tr|Q10PK6|Q10PK6_ORYSJ Squalene monooxygenase, putative, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g12900 PE=4
           SV=1
          Length = 582

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +1

Query: 7   IIFPIIRAEGVRQMFFPNTIPAYYKAPP 90
           IIFPII+AEGVRQMFFP T+PAYY+APP
Sbjct: 492 IIFPIIKAEGVRQMFFPATVPAYYRAPP 519