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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952986
Clone id TST38A01NGRL0015_J05
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_J05. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATTTAAGGGGACTCACCGCCCAGATTTCTCGCCTCTTTGCGAGCGCCCATTTGATTGGGG
GTCTGCTCTTCTGACCGTTTAGGGTTTCGCTACTGCTGTTAGGGTTTCTCCACGTGCCAT
CGTGATTTAGTTCGAGCTACCGTAATTCGGTCTTGTAGATCACTACAGAATTTCCGTATC
GACGCGAGGTTTTGGGACACAGCAGATCTCTCTCGTTCTACTTCAGATCTGTGTCCAGGA
GCTAAGCGAGCTCAGGATTGATGGAGAATATTTATTCTTTCTGGAGTCTAAATGACAATA
ATCGGCGCTCTCCCACTGAGATGCAAGAGGATCAAAGCTGGAAAGTAGCAGCTACCAAGC
TTGCTTTTGCGGATCAGATGAGGCTGAAGTTTGATAGGTCTAGATCTGATGCGAAGGTTG
TGGCCCCTCATGAGAAGAACATTAAACAAGCAAAGGGACGATCCAAGGGCAGAGCTGAAG
ACATGCTGAAGGGGGAAGGTTTCAACCAGAAGTTTTCGGATGGGGATTTGAGATATGGAG
ATTTGGGTCAGAAGCTTGGAGCAGGTAACATGTCAACATCACAGATTGTTGGCAGTGCAG
ATAAACG
■■Homology search results ■■ -
sp_hit_id Q15UD3
Definition sp|Q15UD3|DNAK_PSEA6 Chaperone protein dnaK OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Align length 99
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952986|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_J05, 5'
         (592 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15UD3|DNAK_PSEA6 Chaperone protein dnaK OS=Pseudoalteromonas...    32   2.4  
sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Sacchar...    32   3.1  
sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium disco...    32   3.1  
sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog OS...    30   6.9  
sp|Q9UHP6|RTDR1_HUMAN Rhabdoid tumor deletion region protein 1 O...    30   9.0  

>sp|Q15UD3|DNAK_PSEA6 Chaperone protein dnaK OS=Pseudoalteromonas
           atlantica (strain T6c / BAA-1087) GN=dnaK PE=2 SV=1
          Length = 639

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
 Frame = +3

Query: 303 RRSPTEMQE-DQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRAE 479
           R+ P  MQ   ++ + A  +L+ A Q  +      +DA    P    IK  + + +   E
Sbjct: 253 RKDPLAMQRLKEAGEKAKIELSSAQQTEVNLPYITADAS--GPKHLTIKLTRAKLESLVE 310

Query: 480 DMLKG--EGFNQKFSDGDLRYGDLGQKLGAGNMSTSQIV 590
            M+K   E   Q  +D DL  GD+   +  G  +   +V
Sbjct: 311 KMVKATLEPLKQALADADLSVGDINDIILVGGQTRMPLV 349


>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2
           OS=Saccharomyces cerevisiae GN=SSF2 PE=1 SV=1
          Length = 453

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
 Frame = +3

Query: 318 EMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKG-----RSKGRAED 482
           E  +  S ++ A +   A +MRLK  R +   + +A  +K +K AK      R K RAE+
Sbjct: 355 EFVQKSSEEIKALEKRHAAKMRLKEQRRKEQEENIAK-KKAVKDAKKQRKLERRKARAEE 413

Query: 483 MLKGEGFNQKFSDG------DLRYGDLGQKL 557
             +G+G +   SD       D  Y D+ + L
Sbjct: 414 QGEGQGKDGAMSDDGSSSSEDEHYSDVPEDL 444


>sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium discoideum
            GN=myoM PE=1 SV=1
          Length = 1737

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 19/100 (19%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = +3

Query: 135  SYRNSVL*ITTEFPYRREVLGHSRSLSFYFRSVSRS*ASSGLMENIYSFWSLNDNNRRSP 314
            SYR   +    +F  R   + +S ++     +++ S     ++EN+ S +  N+NN+ + 
Sbjct: 795  SYRRDFI----QFYSRYNCILNSLNIKINLTNINHSNLCKEILENVNSQYKNNNNNKNNN 850

Query: 315  TEM-----QEDQSWKVAATKLAFADQMRLKFDRSRSDAKV 419
             ++         ++++  TK+  +D++ +  ++ R D+ V
Sbjct: 851  NQIVKITTNSKPTFQIGKTKIFISDELYIYLEKKRYDSLV 890


>sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog
           OS=Dictyostelium discoideum GN=wdr61 PE=4 SV=1
          Length = 299

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +3

Query: 174 PYRREVLGHSRSLSFYFRSVSRS*----ASSGLMENIYSFWSLNDNNRRSPTEMQEDQSW 341
           PY   +LGHS   SF F  V+ S     ASSG ++     W +      S      DQ+W
Sbjct: 216 PYIASLLGHS---SFIFSLVASSNGDLLASSGSIDRKVCIWDIKTRKLDSSFTAHADQTW 272

Query: 342 KVA 350
            +A
Sbjct: 273 DLA 275


>sp|Q9UHP6|RTDR1_HUMAN Rhabdoid tumor deletion region protein 1
           OS=Homo sapiens GN=RTDR1 PE=2 SV=1
          Length = 348

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = -3

Query: 545 QISISQIPIRKLLVETFPL--QHVFSSALGSS--LCLFNVLLMRGHNLRIRSRPIKLQPH 378
           Q+ + +   ++ +++T  L  Q   + ALGS+  L L   LL    N+R ++    L   
Sbjct: 159 QVEVEEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVS 218

Query: 377 LIRKSKLGSCYFPAL-ILLHL 318
           + R+ K   C+F  + IL+HL
Sbjct: 219 ISREGKKQVCHFDVIPILVHL 239
tr_hit_id A9NP04
Definition tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 75
Score (bit) 41.2
E-value 0.044
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952986|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_J05, 5'
         (592 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea...    41   0.044
tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citru...    40   0.099
tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solan...    36   1.9  
tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medic...    36   1.9  
tr|Q3J402|Q3J402_RHOS4 Rod shape-determining protein MreC OS=Rho...    35   4.1  
tr|A3PIE7|A3PIE7_RHOS1 Rod shape-determining protein MreC OS=Rho...    35   4.1  
tr|Q70AN6|Q70AN6_RHOSH MreC protein OS=Rhodobacter sphaeroides G...    35   4.1  
tr|Q8G712|Q8G712_BIFLO Putative uncharacterized protein OS=Bifid...    34   5.4  
tr|B3DU84|B3DU84_BIFLD Subtilisin-like serine protease OS=Bifido...    34   5.4  
tr|A4WSY0|A4WSY0_RHOS5 Rod shape-determining protein MreC OS=Rho...    34   5.4  
tr|Q3T552|Q3T552_BIFLO Endo-alpha-N-acetylgalactosaminidase OS=B...    34   5.4  
tr|B2C4I9|B2C4I9_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    34   5.4  
tr|B2C4I3|B2C4I3_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    34   5.4  
tr|B2C4I2|B2C4I2_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    34   5.4  
tr|B2C4I1|B2C4I1_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    34   5.4  
tr|B2C4I0|B2C4I0_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    34   5.4  
tr|B2C4H8|B2C4H8_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    34   5.4  
tr|B2C4H7|B2C4H7_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    34   5.4  
tr|B2C4H6|B2C4H6_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    34   5.4  
tr|Q231A2|Q231A2_TETTH Protein kinase domain containing protein ...    34   7.1  

>tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 273

 Score = 41.2 bits (95), Expect = 0.044
 Identities = 26/75 (34%), Positives = 42/75 (56%)
 Frame = +3

Query: 261 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 440
           M + ++FW L ++ R   +E   DQ+W +AA+KLA  +Q R K DR  S     +  E  
Sbjct: 1   MVDSFAFWQLGESLRGLSSE---DQNWTLAASKLATFEQTRGKSDRINSLEPKTSYAE-- 55

Query: 441 IKQAKGRSKGRAEDM 485
           +K   G+S G+ E++
Sbjct: 56  VKHRGGKSNGKLEEV 70


>tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citrus
           paradisi PE=2 SV=1
          Length = 305

 Score = 40.0 bits (92), Expect = 0.099
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
 Frame = +3

Query: 261 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 440
           M+N++SFW L D   R  +   EDQSW  AA++L  A+Q R K +R             N
Sbjct: 1   MDNMHSFWQLGD-ELRGQSRTSEDQSWLRAASRL--AEQTRFKGERM-----------NN 46

Query: 441 IKQAKGRSKGRAEDML------KGEGFNQKFS 518
           +  +KG ++ R  D +        E FN  F+
Sbjct: 47  LDLSKGMTEIRPRDKIMYHEDNNFESFNFNFN 78


>tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 298

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 261 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLA----FADQMRLKFDRSRSDAKV 419
           MEN+ S+W   D   R  ++  ED  W  AA KL+    +  + R   D S+S A++
Sbjct: 1   MENMQSYWQFGD-ELRGQSKASEDHKWSTAALKLSEQMKYKGERRNNLDLSKSSAEI 56


>tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 302

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
 Frame = +3

Query: 261 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 440
           M+N++SFW L D   R  ++  ED  W + A+KLA   + R K +R             N
Sbjct: 1   MDNMHSFWQLGD-ELRGHSKASEDHKWLMVASKLA---EQRSKAERF-----------NN 45

Query: 441 IKQAKGRSKGRAEDMLKGEGFNQ--KFSDGDLRYGDLGQKLGAGNMSTSQI 587
           +  +KG  + R  D     GF +  KF   +L   +L  K    NMS S +
Sbjct: 46  LDLSKGPLETRPRDKF---GFQEENKFDTLNLSMLNLDSKF-TENMSKSSL 92


>tr|Q3J402|Q3J402_RHOS4 Rod shape-determining protein MreC
           OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
           NCIB 8253 / DSM 158) GN=mreC PE=4 SV=1
          Length = 300

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
 Frame = +3

Query: 252 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 431
           +G++EN  S+  + + N+    E+Q+ ++WK AA +L   +   L  ++ R D K+   H
Sbjct: 67  AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 432 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDGDLRYGDLG--QKLGAGNMSTSQIV 590
              +  A   S  R + +L   G      DG      +G   ++     +TS+++
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDGWATMDGIGLVGRISGVGRTTSRVI 178


>tr|A3PIE7|A3PIE7_RHOS1 Rod shape-determining protein MreC
           OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
           2.4.9) GN=Rsph17029_1002 PE=4 SV=1
          Length = 300

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
 Frame = +3

Query: 252 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 431
           +G++EN  S+  + + N+    E+Q+ ++WK AA +L   +   L  ++ R D K+   H
Sbjct: 67  AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 432 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDGDLRYGDLG--QKLGAGNMSTSQIV 590
              +  A   S  R + +L   G      DG      +G   ++     +TS+++
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDGWATMDGIGLVGRISGVGRTTSRVI 178


>tr|Q70AN6|Q70AN6_RHOSH MreC protein OS=Rhodobacter sphaeroides
           GN=mreC PE=4 SV=1
          Length = 300

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
 Frame = +3

Query: 252 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 431
           +G++EN  S+  + + N+    E+Q+ ++WK AA +L   +   L  ++ R D K+   H
Sbjct: 67  AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 432 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDGDLRYGDLG--QKLGAGNMSTSQIV 590
              +  A   S  R + +L   G      DG      +G   ++     +TS+++
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDGWATMDGIGLVGRISGVGRTTSRVI 178


>tr|Q8G712|Q8G712_BIFLO Putative uncharacterized protein
           OS=Bifidobacterium longum GN=BL0464 PE=4 SV=1
          Length = 1966

 Score = 34.3 bits (77), Expect = 5.4
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +3

Query: 297 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 476
           NN     E+ E  +W++A   + F  Q +  F  +  + K VA +   + Q+        
Sbjct: 622 NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 671

Query: 477 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMST 578
             +LKG G N+    G   YGD+GQ+L GA +M+T
Sbjct: 672 --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNT 703


>tr|B3DU84|B3DU84_BIFLD Subtilisin-like serine protease
           OS=Bifidobacterium longum (strain DJO10A) GN=aprE PE=4
           SV=1
          Length = 1937

 Score = 34.3 bits (77), Expect = 5.4
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +3

Query: 297 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 476
           NN     E+ E  +W++A   + F  Q +  F  +  + K VA +   + Q+        
Sbjct: 593 NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 642

Query: 477 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMST 578
             +LKG G N+    G   YGD+GQ+L GA +M+T
Sbjct: 643 --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNT 674


>tr|A4WSY0|A4WSY0_RHOS5 Rod shape-determining protein MreC
           OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
           2.4.3) GN=Rsph17025_1601 PE=4 SV=1
          Length = 304

 Score = 34.3 bits (77), Expect = 5.4
 Identities = 24/91 (26%), Positives = 43/91 (47%)
 Frame = +3

Query: 252 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 431
           +G++EN  S+  + + N+    E+Q+ ++WK AA +L   +   L  ++ R D K+   H
Sbjct: 67  AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 432 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDG 524
              +  A   S  R + +L   G      DG
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDG 154