DK952988 |
Clone id |
TST38A01NGRL0015_J07 |
Library |
TST38 |
Length |
810 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_J07. 5' end sequence. |
Accession |
DK952988 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1248Contig1 |
Sequence |
ATTGCGGGGAAAGAGTTTTGGCTTGAGGGGCTGGGGCTGCCTCGGGAGGGAGGCCCCGGC CGCCCTACTTGTGACGTGCTGCAAAGTCCCCCCCCCCCCTTGATTTTTGGCCTGTGGGTG CATCCGCCCTCCTGCCCCTTCTGTGGGGGGTTTGTGTACTTGGATTCGGTTCAGCCTTCA TGGTGGCACCGGTGCATCGAATTTCTTGGGACGCTCGTTTGCAGATGCGGGCATCTTAGT GGTTTTTTACGCTGGGACATAGCTTCCATCAAAAAGCCTGTGGTTCGGATCATTGCTACC GTCGAAGCTTTTGCTTGGCCCTTTTTGCTCGGGGAAGTTGAAGGCATGGCCTCTTTTGGT GGCAGCTGAGGAGTCCGGGCGCCTTCTCCCTATGCTGTCCTTCTACGACTGATATTATCC TGCTTGCTGCTCGTCGGTTGAGGTTTCTTCTTCTTTTTCAGGTTGGCCTGCTCGGGTCGA TGATGGAGATATTCGGGCTCCGCCCTTCTTGCGACTACCATTTTTGGCCTTGGGTGATCT TCTGCGATGGAGACCTTAGCTTGGGGGAAGGAGCTAGCTTTCTGGTGGGCACCCCGTTTT GTGAATCCCAGGGGTTTCTTCTTTTTCTCCTATGTTTATTGGGTTTGTTTGGTTTTATGG GGGGGGGGGGGACCCCCCGTTTCCCCCCTATTCTTTTTGAGAATTTCCCTTTTTTGGGCC CTTTGAACCCCCCCTTACCCCCCAACCAATTGGGGGGGAGAGGGGGTTTTTTTAAAATTT TATTTTTTTTTTTTTGGTTTTTTTTTTTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0PHV7 |
Definition |
sp|Q0PHV7|DACT3_MOUSE Dapper homolog 3 OS=Mus musculus |
Align length |
39 |
Score (bit) |
36.2 |
E-value |
0.22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952988|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_J07, 5' (810 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q0PHV7|DACT3_MOUSE Dapper homolog 3 OS=Mus musculus GN=Dact3 ... 36 0.22 sp|Q9Y467|SALL2_HUMAN Sal-like protein 2 OS=Homo sapiens GN=SALL... 34 1.1 sp|Q2IR55|PYRD_RHOP2 Dihydroorotate dehydrogenase OS=Rhodopseudo... 33 1.5 sp|Q9QX96|SALL2_MOUSE Sal-like protein 2 OS=Mus musculus GN=Sall... 33 1.9 sp|Q7L2J0|MEPCE_HUMAN 7SK snRNA methylphosphate capping enzyme O... 33 1.9 sp|P34092|MYOB_DICDI Myosin IB heavy chain OS=Dictyostelium disc... 33 2.5 sp|Q8K3A9|MEPCE_MOUSE 7SK snRNA methylphosphate capping enzyme O... 32 3.2 sp|Q11053|PKNH_MYCTU Probable serine/threonine-protein kinase pk... 32 4.2 sp|Q8F7K1|IF2_LEPIN Translation initiation factor IF-2 OS=Leptos... 32 4.2 sp|Q13D13|PYRD_RHOPS Dihydroorotate dehydrogenase OS=Rhodopseudo... 32 5.5 sp|P08393|ICP0_HHV11 Trans-acting transcriptional protein ICP0 O... 32 5.5 sp|Q9C6H4|SINL1_ARATH E3 ubiquitin-protein ligase SINA-like 1 OS... 31 7.2 sp|A4Z2G7|PYRD_BRASO Dihydroorotate dehydrogenase OS=Bradyrhizob... 31 7.2 sp|P0C5J9|SHKB1_RAT SH3KBP1-binding protein 1 OS=Rattus norvegic... 31 9.4 sp|P00620|PA2_BITGA Phospholipase A2 OS=Bitis gabonica PE=1 SV=1 31 9.4
>sp|Q0PHV7|DACT3_MOUSE Dapper homolog 3 OS=Mus musculus GN=Dact3 PE=2 SV=1 Length = 610
Score = 36.2 bits (82), Expect = 0.22 Identities = 19/39 (48%), Positives = 22/39 (56%) Frame = -3
Query: 142 RRGRRADAPTGQKSRGGGDFAARHK*GGRGLPPEAAPAP 26 RR RR A + S GG D AR + G R PPEA+P P Sbjct: 255 RRRRRRGAGQPRTSPGGADGGARRQNGARPRPPEASPPP 293
>sp|Q9Y467|SALL2_HUMAN Sal-like protein 2 OS=Homo sapiens GN=SALL2 PE=1 SV=3 Length = 1007
Score = 33.9 bits (76), Expect = 1.1 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Frame = -3
Query: 169 PNPSTQTPHRRGRRAD-----APTGQKSRGGGDFA-ARHK*GGRGLPPEAAPAP 26 P T P RRG + A TG + GGG A K G LPPE+ PAP Sbjct: 107 PTDPTWGPERRGEESSGHFLVAATGTAAGGGGGLILASPKLGATPLPPESTPAP 160
>sp|Q2IR55|PYRD_RHOP2 Dihydroorotate dehydrogenase OS=Rhodopseudomonas palustris (strain HaA2) GN=pyrD PE=3 SV=1 Length = 364
Score = 33.5 bits (75), Expect = 1.5 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Frame = -1
Query: 381 RPDSSAATKRGHAFNFPEQKGPSKSFD-GSNDPNHRLFDG-SYVPA*KTTKMPASANERP 208 RPD S R NFP G + FD + P+ L G +V T P + N RP Sbjct: 38 RPDDSKLAVRAFGLNFPNPVGIAAGFDKNAEAPDALLRLGFGFVEIGTVTPKPQAGNPRP 97
Query: 207 KKFDAPVPP*RLNRIQVHKPPTEGAGGRMHPQAKNQGG 94 + F +NR+ + E R+ +A+ QGG Sbjct: 98 RLFRLERDEAIINRMGFNNDGAEAVLRRLAARAQ-QGG 134
>sp|Q9QX96|SALL2_MOUSE Sal-like protein 2 OS=Mus musculus GN=Sall2 PE=2 SV=1 Length = 1004
Score = 33.1 bits (74), Expect = 1.9 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Frame = -3
Query: 169 PNPSTQTPHRRGRRAD-----APTGQKSRGGGDFA-ARHK*GGRGLPPEAAPAP 26 P+P T P RRG + A TG + GGG A K G LPPE+ PAP Sbjct: 108 PDP-TWGPERRGEESSGQFLVAATGTAAGGGGGLILASPKLGATPLPPESTPAP 160
>sp|Q7L2J0|MEPCE_HUMAN 7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE PE=1 SV=1 Length = 689
Score = 33.1 bits (74), Expect = 1.9 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Frame = -1
Query: 396 SIGRRRPDSSAATKRGHAFNFPEQKGPSKSFDGSNDPNHRLFD--GSYVPA*KTTKMPAS 223 ++GR P ++A + G GP G RL D G P P Sbjct: 64 AVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEA----RLSDPPGRAAP-------PDV 112
Query: 222 ANERP----KKFDAPVPP*RLNRIQVHKPPTEGAGGRMHPQAKNQGGGGTLQH 76 ER + P PP N Q H+PP G GG+ GGGG +H Sbjct: 113 GEERRGGGGTELGPPAPPRPRNGYQPHRPP-GGGGGKRRNSCNVGGGGGGFKH 164
>sp|P34092|MYOB_DICDI Myosin IB heavy chain OS=Dictyostelium discoideum GN=myoB PE=1 SV=2 Length = 1111
Score = 32.7 bits (73), Expect = 2.5 Identities = 22/49 (44%), Positives = 25/49 (51%) Frame = -3
Query: 169 PNPSTQTPHRRGRRADAPTGQKSRGGGDFAARHK*GGRGLPPEAAPAPQ 23 P P+ Q GR AP G+ + GGG A GGR LP A PAPQ Sbjct: 1010 PQPTQQGGAPGGR--GAPMGRGAPGGGPAGA----GGRPLPTVAKPAPQ 1052
>sp|Q8K3A9|MEPCE_MOUSE 7SK snRNA methylphosphate capping enzyme OS=Mus musculus GN=Mepce PE=1 SV=2 Length = 666
Score = 32.3 bits (72), Expect = 3.2 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -1
Query: 192 PVPP*RLNRIQVHKPPTEGAGGRMHPQAKNQGGGGTLQH 76 P PP N Q H+PP G G R + G GG+ +H Sbjct: 101 PAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGSGGSFKH 139
>sp|Q11053|PKNH_MYCTU Probable serine/threonine-protein kinase pknH OS=Mycobacterium tuberculosis GN=pknH PE=1 SV=2 Length = 626
Score = 32.0 bits (71), Expect = 4.2 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -3
Query: 184 TMKAEPNPSTQTPHRRGRRADAPTGQKSRGGGDFAAR--HK*GGRGLPPEAAPAPQAKT 14 T A+P P+ Q P G+ + AP G ++ GG G PP P+P A+T Sbjct: 337 TPPAQPGPAGQRPGPTGQPSWAPNSGPMPASGPTPTPQYYQGGGWGAPPSGGPSPWAQT 395
>sp|Q8F7K1|IF2_LEPIN Translation initiation factor IF-2 OS=Leptospira interrogans GN=infB PE=3 SV=1 Length = 880
Score = 32.0 bits (71), Expect = 4.2 Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 12/154 (7%) Frame = -1
Query: 513 RKKGGARISPSSTRAGQPEKEEETSTDEQQAG*YQ-------S*KDSIGRRRPDSSAATK 355 +KKG +PS A P+KE +D S + I R P S + K Sbjct: 44 KKKGDDPSTPSP--AASPKKETVAESDPSSKPPVMPLPLPDDSGQSPIVRPAPSSHSPAK 101
Query: 354 RGHAFNFPEQKGPSKSFDGS--NDPNHRLFDGSYVPA*KTTKMPASAN---ERPKKFDAP 190 R ++ P K G D + R GS P ++ +N RP + P Sbjct: 102 R--------EESPGKQDAGRPPRDKDTRQGGGSSYPPSRSPFQKEDSNIIVSRPIQRTGP 153
Query: 189 VPP*RLNRIQVHKPPTEGAGGRMHPQAKNQGGGG 88 P Q ++ P +G GG + QGGGG Sbjct: 154 SRPNSGGGYQGNRGPGQGGGGYQGNRGPGQGGGG 187
>sp|Q13D13|PYRD_RHOPS Dihydroorotate dehydrogenase OS=Rhodopseudomonas palustris (strain BisB5) GN=pyrD PE=3 SV=1 Length = 364
Score = 31.6 bits (70), Expect = 5.5 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 2/98 (2%) Frame = -1
Query: 381 RPDSSAATKRGHAFNFPEQKGPSKSFDGSNDPNHRL--FDGSYVPA*KTTKMPASANERP 208 RPD R NFP G + FD + + L +V T P + N RP Sbjct: 38 RPDDPKLAVRAFGLNFPNPVGIAAGFDKNAEAPDALMRLGFGFVEIGTVTPKPQAGNPRP 97
Query: 207 KKFDAPVPP*RLNRIQVHKPPTEGAGGRMHPQAKNQGG 94 + F +NR+ + +E R+ +A+ QGG Sbjct: 98 RLFRLERDEAVINRMGFNNDGSEAVLRRLAARAQ-QGG 134
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4PEW8 |
Definition |
tr|B4PEW8|B4PEW8_DROYA GE20840 OS=Drosophila yakuba |
Align length |
47 |
Score (bit) |
40.0 |
E-value |
0.19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952988|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_J07, 5' (810 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4PEW8|B4PEW8_DROYA GE20840 OS=Drosophila yakuba GN=GE20840 P... 40 0.19 tr|A9H7P2|A9H7P2_GLUDA Putative secretion protein, HlyD-family O... 40 0.25 tr|Q9VSY7|Q9VSY7_DROME Metal response element-binding transcript... 39 0.33 tr|Q8IQC5|Q8IQC5_DROME Metal response element-binding transcript... 39 0.33 tr|Q494H3|Q494H3_DROME RE65248p (Fragment) OS=Drosophila melanog... 39 0.33 tr|Q1LZ06|Q1LZ06_DROME FI01022p (Fragment) OS=Drosophila melanog... 39 0.33 tr|B4QN64|B4QN64_DROSI GD14182 OS=Drosophila simulans GN=GD14182... 39 0.33 tr|A8JNP3|A8JNP3_DROME Metal response element-binding transcript... 39 0.33 tr|Q0K4F8|Q0K4F8_RALEH Putative uncharacterized protein h16_B031... 39 0.43 tr|Q9GRX2|Q9GRX2_DROME Heavy metal-responsive transcription fact... 38 0.72 tr|Q21D92|Q21D92_RHOPB OmpA/MotB OS=Rhodopseudomonas palustris (... 37 1.6 tr|B4HKQ6|B4HKQ6_DROSE GM25148 OS=Drosophila sechellia GN=GM2514... 37 1.6 tr|Q9NFS1|Q9NFS1_DROME Heavy metal-responsive transcription fact... 36 2.8 tr|Q95TF7|Q95TF7_DROME SD10848p OS=Drosophila melanogaster GN=MT... 36 2.8 tr|B6PIN3|B6PIN3_BRAFL Putative uncharacterized protein (Fragmen... 36 2.8 tr|B6MX18|B6MX18_BRAFL Putative uncharacterized protein OS=Branc... 36 2.8 tr|B4VGU1|B4VGU1_9ACTO Putative uncharacterized protein (Fragmen... 36 3.6 tr|B6GY60|B6GY60_PENCH Pc12g00890 protein OS=Penicillium chrysog... 36 3.6 tr|A2QKU6|A2QKU6_ASPNC Function: in A. niger GABA is used as a n... 36 3.6 tr|A4VHS9|A4VHS9_PSEU5 Putative uncharacterized protein OS=Pseud... 35 4.7 tr|B6KCJ8|B6KCJ8_TOXGO Putative uncharacterized protein OS=Toxop... 35 4.7 tr|B2ASE4|B2ASE4_PODAN Predicted CDS Pa_1_23240 OS=Podospora ans... 35 4.7 tr|A6XDD8|A6XDD8_9PEZI Putative uncharacterized protein (Fragmen... 35 4.7 tr|B6L3J7|B6L3J7_BRAFL Putative uncharacterized protein OS=Branc... 35 4.7 tr|B3NCG2|B3NCG2_DROER GG15376 OS=Drosophila erecta GN=GG15376 P... 35 6.1 tr|B4NPW4|B4NPW4_DROWI GK16707 OS=Drosophila willistoni GN=GK167... 35 8.1 tr|A5K8Y9|A5K8Y9_PLAVI Putative uncharacterized protein OS=Plasm... 35 8.1
>tr|B4PEW8|B4PEW8_DROYA GE20840 OS=Drosophila yakuba GN=GE20840 PE=4 SV=1 Length = 1005
Score = 40.0 bits (92), Expect = 0.19 Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2
Query: 29 GWGCLGREA--PAALLVTCCKVP--PPP*FLACGCIRPPAPSVGGLC 157 G GC G A PA CC P P P CGC +P APS GG C Sbjct: 857 GGGCCGGGAAKPAPAAGGCCGEPKAPKPLNTGCGCAQPSAPSAGGCC 903
>tr|A9H7P2|A9H7P2_GLUDA Putative secretion protein, HlyD-family OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=GDI3723 PE=4 SV=1 Length = 484
Score = 39.7 bits (91), Expect = 0.25 Identities = 24/64 (37%), Positives = 31/64 (48%) Frame = -3
Query: 220 KRASQEIRCTGATMKAEPNPSTQTPHRRGRRADAPTGQKSRGGGDFAARHK*GGRGLPPE 41 +R QE+R G + P P+ + P + RR P G + R G A H GGRG P Sbjct: 236 RRQRQELRGRGRLLHPPPGPAARRPGQGPRRRPGP-GPRHRPHGRAPAPHPGGGRGQPDI 294
Query: 40 AAPA 29 A PA Sbjct: 295 ADPA 298
>tr|Q9VSY7|Q9VSY7_DROME Metal response element-binding transcription Factor-1, isoform A OS=Drosophila melanogaster GN=MTF-1 PE=1 SV=2 Length = 791
Score = 39.3 bits (90), Expect = 0.33 Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2
Query: 29 GWGCLGREA--PAALLVTCCKVP--PPP*FLACGCIRPPAPSVGGLC 157 G GC G A PA CC P P P CGC RP APS GG C Sbjct: 639 GGGCCGGGAVKPAPSGGGCCGEPKAPKPVNAGCGCARPSAPSSGGCC 685
>tr|Q8IQC5|Q8IQC5_DROME Metal response element-binding transcription Factor-1, isoform B OS=Drosophila melanogaster GN=MTF-1 PE=2 SV=1 Length = 570
Score = 39.3 bits (90), Expect = 0.33 Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2
Query: 29 GWGCLGREA--PAALLVTCCKVP--PPP*FLACGCIRPPAPSVGGLC 157 G GC G A PA CC P P P CGC RP APS GG C Sbjct: 418 GGGCCGGGAVKPAPSGGGCCGEPKAPKPVNAGCGCARPSAPSSGGCC 464
>tr|Q494H3|Q494H3_DROME RE65248p (Fragment) OS=Drosophila melanogaster GN=MTF-1 PE=2 SV=1 Length = 582
Score = 39.3 bits (90), Expect = 0.33 Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2
Query: 29 GWGCLGREA--PAALLVTCCKVP--PPP*FLACGCIRPPAPSVGGLC 157 G GC G A PA CC P P P CGC RP APS GG C Sbjct: 430 GGGCCGGGAVKPAPSGGGCCGEPKAPKPVNAGCGCARPSAPSSGGCC 476
>tr|Q1LZ06|Q1LZ06_DROME FI01022p (Fragment) OS=Drosophila melanogaster GN=MTF-1 PE=2 SV=1 Length = 582
Score = 39.3 bits (90), Expect = 0.33 Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2
Query: 29 GWGCLGREA--PAALLVTCCKVP--PPP*FLACGCIRPPAPSVGGLC 157 G GC G A PA CC P P P CGC RP APS GG C Sbjct: 430 GGGCCGGGAVKPAPSGGGCCGEPKAPKPVNAGCGCARPSAPSSGGCC 476
>tr|B4QN64|B4QN64_DROSI GD14182 OS=Drosophila simulans GN=GD14182 PE=4 SV=1 Length = 1004
Score = 39.3 bits (90), Expect = 0.33 Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2
Query: 29 GWGCLGREA--PAALLVTCCKVP--PPP*FLACGCIRPPAPSVGGLC 157 G GC G A PA CC P P P CGC RP APS GG C Sbjct: 852 GGGCCGGGAVKPAPSGGGCCGEPKAPKPVNTGCGCARPSAPSSGGCC 898
>tr|A8JNP3|A8JNP3_DROME Metal response element-binding transcription Factor-1, isoform C OS=Drosophila melanogaster GN=MTF-1 PE=4 SV=1 Length = 1006
Score = 39.3 bits (90), Expect = 0.33 Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2
Query: 29 GWGCLGREA--PAALLVTCCKVP--PPP*FLACGCIRPPAPSVGGLC 157 G GC G A PA CC P P P CGC RP APS GG C Sbjct: 854 GGGCCGGGAVKPAPSGGGCCGEPKAPKPVNAGCGCARPSAPSSGGCC 900
>tr|Q0K4F8|Q0K4F8_RALEH Putative uncharacterized protein h16_B0316 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=H16_B0316 PE=4 SV=1 Length = 464
Score = 38.9 bits (89), Expect = 0.43 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1
Query: 208 GTLVCRCGHLSGFLRWDIASIKKPVVRIIATVEAFAW 318 G L CRC H +GF+R + +P R+ A +E +AW Sbjct: 192 GRLECRCAHCTGFIRTLAGQLARPARRLCAALEDYAW 228
>tr|Q9GRX2|Q9GRX2_DROME Heavy metal-responsive transcription factor-1 OS=Drosophila melanogaster GN=MTF-1 PE=2 SV=1 Length = 791
Score = 38.1 bits (87), Expect = 0.72 Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2
Query: 29 GWGCLGREA--PAALLVTCCKVP--PPP*FLACGCIRPPAPSVGGLC 157 G GC G A PA CC P P P CGC RP APS GG C Sbjct: 639 GGGCCGGGAVKPAPSGGGCCGEPKAPKPVNDGCGCARPSAPSSGGCC 685
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