NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952994
Clone id TST38A01NGRL0015_J13
Library
Length 560
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_J13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGGAAGCTGCTAATCCCTGCCCTCTCTTTATTTTAATTCCCACTTTTCATTCTCTACACC
ACTTCTCGACTTAGTATTCTGGAGTCGGGTACTGGAAAAAACTTTATTCTTCTTTCAAGT
AAATGTGAGAATTTGATTTAGATATAGTTAGATTTTAAGTAGTAAAGCTGGTGAGGATAA
AGGCAAGTAGGTAGGGAAATAAAAAATTGATAAGAAGGAGGATTCCAATGCAACATGTAA
AAATATATCTTTCCACAGCCCCTGTTGTAGCTACAATATGGTTTGGCTTACTGGCTGGTT
TATTAATAGAAATAAATCGATTCTTTCCGGATGCTTTATTATTTCCATTTCCCTAACTTA
TTGTTATTAACTAAACCAAAGGAGCCGTGTAGGAACCATACGAAGTGAGAACTCTATGGT
TCGTCATACACGTAATAATGACTCAATTTAGTGATGGGAGTGTTTAATCTATTTACTTCA
TAGGTCGAAACTTCGTAAGTAGTTCGTTTCTATTGCTATGGATCTACATGCGACCCTCAC
CCCCTCTTTTTGGGGAAACT
■■Homology search results ■■ -
sp_hit_id Q85FK2
Definition sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS=Adiantum capillus-veneris
Align length 31
Score (bit) 64.7
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952994|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_J13, 5'
         (560 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS...    65   3e-10
sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX OS...    57   8e-08
sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX OS...    57   8e-08
sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX OS...    56   1e-07
sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX OS...    56   1e-07
sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX OS...    56   1e-07
sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX OS...    56   1e-07
sp|Q859W0|PSAJ_ANTFO Photosystem I reaction center subunit IX OS...    56   1e-07
sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX OS...    56   1e-07
sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX OS...    55   2e-07
sp|Q32RH5|PSAJ_ZYGCR Photosystem I reaction center subunit IX OS...    54   4e-07
sp|Q5SD35|PSAJ_HUPLU Photosystem I reaction center subunit IX OS...    54   4e-07
sp|Q3BAM0|PSAJ_PHAAO Photosystem I reaction center subunit IX OS...    53   9e-07
sp|A6H5K2|PSAJ_CYCTA Photosystem I reaction center subunit IX OS...    53   9e-07
sp|Q7YJV6|PSAJ_CALFG Photosystem I reaction center subunit IX OS...    53   9e-07
sp|B2Y1X9|PSAJ_WELMI Photosystem I reaction center subunit IX OS...    52   2e-06
sp|A9L9B6|PSAJ_LEMMI Photosystem I reaction center subunit IX OS...    52   2e-06
sp|Q0ZJ00|PSAJ_VITVI Photosystem I reaction center subunit IX OS...    52   2e-06
sp|A6MMW4|PSAJ_ILLOL Photosystem I reaction center subunit IX OS...    52   2e-06
sp|Q2QD69|PSAJ_CUCSA Photosystem I reaction center subunit IX OS...    52   3e-06
sp|Q06GP0|PSAJ_PIPCE Photosystem I reaction center subunit IX OS...    51   3e-06
sp|Q09WZ7|PSAJ_MORIN Photosystem I reaction center subunit IX OS...    51   3e-06
sp|A6MME2|PSAJ_CHLSC Photosystem I reaction center subunit IX OS...    51   3e-06
sp|Q3V515|PSAJ_ACOCL Photosystem I reaction center subunit IX OS...    51   3e-06
sp|Q2PMR4|PSAJ_SOYBN Photosystem I reaction center subunit IX OS...    51   4e-06
sp|A4GGC6|PSAJ_PHAVU Photosystem I reaction center subunit IX OS...    51   4e-06
sp|A6MMM7|PSAJ_DIOEL Photosystem I reaction center subunit IX OS...    51   4e-06
sp|A8SEC3|PSAJ_CERDE Photosystem I reaction center subunit IX OS...    51   4e-06
sp|P62595|PSAJ_WHEAT Photosystem I reaction center subunit IX OS...    50   6e-06
sp|A1E9U4|PSAJ_SORBI Photosystem I reaction center subunit IX OS...    50   6e-06

>sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX
           OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2
          Length = 42

 Score = 64.7 bits (156), Expect = 3e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQHVKIYLSTAPVVATIWFGLLAGLLIEINR
Sbjct: 1   MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 31


>sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX
           OS=Chara vulgaris GN=psaJ PE=3 SV=1
          Length = 41

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ VK YLSTAPV+AT+WFGLLAG+LIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGLLAGILIEINR 31


>sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX
           OS=Chaetosphaeridium globosum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ+ K YLSTAPV+ATIWFG LAGLLIEINR
Sbjct: 1   MQYFKTYLSTAPVIATIWFGFLAGLLIEINR 31


>sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX
           OS=Gnetum parvifolium GN=psaJ PE=3 SV=1
          Length = 43

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ +K YLSTAPV+AT WFGLLAGLLIEINR
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINR 31


>sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX
           OS=Psilotum nudum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31


>sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX
           OS=Physcomitrella patens GN=psaJ PE=3 SV=1
          Length = 41

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31


>sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX
           OS=Marchantia polymorpha GN=psaJ PE=3 SV=1
          Length = 42

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31


>sp|Q859W0|PSAJ_ANTFO Photosystem I reaction center subunit IX
           OS=Anthoceros formosae GN=psaJ PE=2 SV=1
          Length = 42

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31


>sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX
           OS=Angiopteris evecta GN=psaJ PE=3 SV=1
          Length = 44

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31


>sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX
           OS=Staurastrum punctulatum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ VK YLSTAPV+A IWFG+LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLAAIWFGILAGLLIEINR 31
tr_hit_id B7ZI94
Definition tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvifolium
Align length 31
Score (bit) 56.2
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952994|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_J13, 5'
         (560 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvif...    56   1e-06
tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra equis...    54   8e-06
tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia lepid...    54   8e-06
tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment) OS=Gi...    53   1e-05
tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yu...    53   1e-05
tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cy...    53   1e-05
tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia m...    52   2e-05
tr|A7NVL0|A7NVL0_VITVI PSI reaction centre subunit IX OS=Vitis v...    52   2e-05
tr|Q4FFM0|Q4FFM0_ACOAM Photosystem I subunit IX (Fragment) OS=Ac...    51   4e-05
tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX OS=Heliosp...    51   5e-05
tr|Q69VC7|Q69VC7_ORYSJ Photosystem I subunit IX_chloroplast OS=O...    50   6e-05
tr|B8Y2Z4|B8Y2Z4_FESAR Photosystem I subunit IX OS=Festuca arund...    50   6e-05
tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium c...    50   6e-05
tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium palm...    50   6e-05
tr|B7T3C4|B7T3C4_9ROSI Photosystem I subunit IX OS=Geranium macr...    50   6e-05
tr|B7T354|B7T354_9ROSI Photosystem I subunit IX OS=Geranium caro...    50   6e-05
tr|Q4FFL6|Q4FFL6_TYPLA Photosystem I subunit IX (Fragment) OS=Ty...    50   8e-05
tr|B7UCF5|B7UCF5_9POAL PsaJ OS=Typha domingensis PE=4 SV=1             50   8e-05
tr|A9QBK4|A9QBK4_MUSAC Photosystem I subunit IX (Fragment) OS=Mu...    50   8e-05
tr|Q4FFL8|Q4FFL8_NUPAD Photosystem I subunit IX (Fragment) OS=Nu...    50   1e-04
tr|Q06R45|Q06R45_9LAMI PSI reaction center subunit IX OS=Forsyth...    50   1e-04
tr|Q06R19|Q06R19_9LAMI PSI reaction center subunit IX OS=Jasminu...    50   1e-04
tr|Q06QZ2|Q06QZ2_9LAMI PSI reaction center subunit IX OS=Jasminu...    50   1e-04
tr|Q06QW6|Q06QW6_9LAMI PSI reaction center subunit IX OS=Jasminu...    50   1e-04
tr|Q06QT7|Q06QT7_9LAMI PSI reaction center subunit IX OS=Menodor...    50   1e-04
tr|B7T2Y3|B7T2Y3_EROTE Photosystem I subunit IX OS=Erodium texan...    50   1e-04
tr|B7T2R2|B7T2R2_9ROSI Photosystem I subunit IX OS=Erodium chrys...    50   1e-04
tr|B2D073|B2D073_OLEEU Photosystem II protein J OS=Olea europaea...    50   1e-04
tr|B0LP54|B0LP54_9CARY PSI reaction centre subunit IX OS=Silene ...    50   1e-04
tr|B0LP33|B0LP33_9CARY PSI reaction centre subunit IX OS=Silene ...    50   1e-04

>tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum
           parvifolium GN=psaJ PE=4 SV=1
          Length = 43

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ +K YLSTAPV+AT WFGLLAGLLIEINR
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINR 31


>tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra
           equisetina GN=psaJ PE=4 SV=1
          Length = 43

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ++K YLSTAPV+AT+WFG LAG LIEINR
Sbjct: 1   MQYIKKYLSTAPVLATLWFGSLAGFLIEINR 31


>tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia
           lepidozioides GN=psaJ PE=4 SV=1
          Length = 42

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 25/31 (80%), Positives = 27/31 (87%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ VK YLSTAPV+AT+W G LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWLGFLAGLLIEINR 31


>tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment)
           OS=Ginkgo biloba GN=psaJ PE=4 SV=1
          Length = 44

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           M+ +KIYLS APV+AT+WFG LAGLLIEINR
Sbjct: 1   MRDIKIYLSVAPVLATLWFGSLAGLLIEINR 31


>tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yucca
           schidigera GN=psaJ PE=4 SV=1
          Length = 44

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ +K YLSTAPV+ T+WFG LAGLLIEINR
Sbjct: 1   MQDIKTYLSTAPVLTTLWFGSLAGLLIEINR 31


>tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cycas
           micronesica GN=psaJ PE=4 SV=1
          Length = 44

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           M+ +K YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MRDIKTYLSTAPVLATLWFGSLAGLLIEINR 31


>tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia
           mirabilis GN=psaJ PE=4 SV=1
          Length = 44

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ +K YLSTAPV+AT+WF  LAGLLIEINR
Sbjct: 1   MQDIKTYLSTAPVLATLWFSSLAGLLIEINR 31


>tr|A7NVL0|A7NVL0_VITVI PSI reaction centre subunit IX OS=Vitis
           vinifera GN=psaJ PE=4 SV=1
          Length = 43

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           M+ +K YLSTAPV++TIWFG LAGLLIEINR
Sbjct: 1   MRDLKTYLSTAPVLSTIWFGSLAGLLIEINR 31


>tr|Q4FFM0|Q4FFM0_ACOAM Photosystem I subunit IX (Fragment)
           OS=Acorus americanus GN=psaJ PE=4 SV=1
          Length = 42

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           MQ +K YLS APV+ T+WFG LAGLLIEINR
Sbjct: 1   MQDIKTYLSVAPVLTTLWFGSLAGLLIEINR 31


>tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX
           OS=Heliosperma alpestre GN=psaJ PE=4 SV=1
          Length = 46

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = +3

Query: 228 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 320
           M+++K YLS APV++T+WFG LAGLLIEINR
Sbjct: 1   MRNIKTYLSVAPVLSTLWFGSLAGLLIEINR 31