DK952995 |
Clone id |
TST38A01NGRL0015_J14 |
Library |
TST38 |
Length |
578 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_J14. 5' end sequence. |
Accession |
DK952995 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1818Contig1 |
Sequence |
GCCTCTACAGTTTTGCTACGAAAGACTCAATGCGTGAGCGTTCGGTTTGAGCGTTGCGAG AGCGATAACAAGTTGACGAGCACTAGCAGCAGCACTGAGATGTCTTCATCCATGGCGGCT GTATCGCCGCAATCGCTTTCTAGCTGCAGAGAGAGTGCGCTCTCAGGGCCATTTGTCTTT ACCTCGTACATGCCGGATTTCACGCTTTAACCCCAGTTCTCTACGGAGAGGAAGCTGCAG AGTGCAAGCGATAGCTCCCTCACCCGTCAGTGTTACTGCCCCAAGCATGTCCAAGTTGAA TGACTTCGATCCCTCCTCCATGCTTCTCAGGCAGCGCATCATCTTTCTGGGCTCCCAGGT AGATGATTTTTCTGCAGATGTGATTATCAGCCAGTTGCTGCTTCTTGATGCAGAGGACTC AACAAAGGATATAAAGCTTTTTATAAATTCCCCCGGAGGTTCTGTCACGGCTGGTATGGG GATCTATGATGCAATCAAGTTGTGTAAGGCAGACGTGTCCACTGTTTGCTTTGGTCTTGC TGCATCTATGGGTGCCTTTCTACTGGCTTCGGGCACTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SXJ6 |
Definition |
sp|Q9SXJ6|CLPP3_ARATH ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana |
Align length |
141 |
Score (bit) |
155.0 |
E-value |
1.0e-37 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RYV9 |
Definition |
tr|A9RYV9|A9RYV9_PHYPA ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
94 |
Score (bit) |
168.0 |
E-value |
2.0e-40 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952995|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_J14, 5' (578 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RYV9|A9RYV9_PHYPA ATP-dependent Clp protease proteolytic su... 168 2e-40 tr|A9NRW7|A9NRW7_PICSI ATP-dependent Clp protease proteolytic su... 167 4e-40 tr|A9NTW0|A9NTW0_PICSI ATP-dependent Clp protease proteolytic su... 167 5e-40 tr|A9T6I1|A9T6I1_PHYPA ATP-dependent Clp protease proteolytic su... 164 2e-39 tr|B6TBU2|B6TBU2_MAIZE ATP-dependent Clp protease proteolytic su... 163 7e-39 tr|A7PR54|A7PR54_VITVI ATP-dependent Clp protease proteolytic su... 162 1e-38 tr|Q5QMT1|Q5QMT1_ORYSJ Putative ATP-dependent Clp protease, prot... 160 5e-38 tr|Q0JMF9|Q0JMF9_ORYSJ ATP-dependent Clp protease proteolytic su... 160 5e-38 tr|A2WQJ7|A2WQJ7_ORYSI ATP-dependent Clp protease proteolytic su... 160 5e-38 tr|B7FH45|B7FH45_MEDTR Putative uncharacterized protein OS=Medic... 158 2e-37 tr|Q8W4Z1|Q8W4Z1_BRAOL ATP-dependent Clp protease proteolytic su... 154 4e-36 tr|Q9M4F0|Q9M4F0_BRANA ATP-dependent Clp protease proteolytic su... 153 6e-36 tr|Q93YL4|Q93YL4_BRANA ATP-dependent Clp protease proteolytic su... 153 6e-36 tr|Q9ST19|Q9ST19_BRACM ATP-dependent Clp protease proteolytic su... 153 8e-36 tr|A8IJ60|A8IJ60_CHLRE ATP-dependent Clp protease proteolytic su... 145 1e-33 tr|A4RXD2|A4RXD2_OSTLU ATP-dependent Clp protease proteolytic su... 143 8e-33 tr|Q019I1|Q019I1_OSTTA ATP-dependent Clp protease proteolytic su... 141 3e-32 tr|A9RE44|A9RE44_PHYPA ATP-dependent Clp protease proteolytic su... 127 3e-28 tr|A5ZXY2|A5ZXY2_9FIRM ATP-dependent Clp protease proteolytic su... 126 8e-28 tr|A9TZR6|A9TZR6_PHYPA ATP-dependent Clp protease proteolytic su... 125 1e-27 tr|A9NTR6|A9NTR6_PICSI ATP-dependent Clp protease proteolytic su... 125 2e-27 tr|A0YKN7|A0YKN7_9CYAN ATP-dependent Clp protease proteolytic su... 123 8e-27 tr|Q79CM2|Q79CM2_SYNE7 ATP-dependent Clp protease proteolytic su... 122 1e-26 tr|A5KJG9|A5KJG9_9FIRM ATP-dependent Clp protease proteolytic su... 122 1e-26 tr|A8STB1|A8STB1_9FIRM ATP-dependent Clp protease proteolytic su... 122 2e-26 tr|A9KSX0|A9KSX0_CLOPH ATP-dependent Clp protease proteolytic su... 121 3e-26 tr|B5CNY1|B5CNY1_9FIRM Putative uncharacterized protein OS=Rumin... 121 3e-26 tr|A7VEQ4|A7VEQ4_9CLOT ATP-dependent Clp protease proteolytic su... 121 3e-26 tr|A0ZER6|A0ZER6_NODSP ATP-dependent Clp protease proteolytic su... 121 3e-26 tr|Q4C1E0|Q4C1E0_CROWT ATP-dependent Clp protease proteolytic su... 120 5e-26
>tr|A9RYV9|A9RYV9_PHYPA ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_25674 PE=3 SV=1 Length = 205
Score = 168 bits (426), Expect = 2e-40 Identities = 84/94 (89%), Positives = 91/94 (96%) Frame = +2
Query: 296 LNDFDPSSMLLRQRIIFLGSQVDDFSADVIISQLLLLDAEDSTKDIKLFINSPGGSVTAG 475 L D DP++MLL+QRI+FLGSQVDDFSADVIISQLLLLDA+D TKDIKLFINSPGGSVTAG Sbjct: 1 LQDLDPATMLLQQRILFLGSQVDDFSADVIISQLLLLDAQDPTKDIKLFINSPGGSVTAG 60
Query: 476 MGIYDAIKLCKADVSTVCFGLAASMGAFLLASGT 577 MGIYDA+KLCKADVSTVCFGLAASMGAFLLA+GT Sbjct: 61 MGIYDAMKLCKADVSTVCFGLAASMGAFLLAAGT 94
>tr|A9NRW7|A9NRW7_PICSI ATP-dependent Clp protease proteolytic subunit OS=Picea sitchensis PE=2 SV=1 Length = 341
Score = 167 bits (423), Expect = 4e-40 Identities = 97/155 (62%), Positives = 109/155 (70%), Gaps = 16/155 (10%) Frame = +2
Query: 161 SQGHLSLPRTCRISRFNPSSLRRGSCRVQAIAPSPV-------------SVTAPS---MS 292 ++ LS P C + + +S R+QA+ P+ SV S M Sbjct: 34 NKNSLSSPPCCFVCSCSSASHLGSRQRMQAVKPNGALSSSRGSLSASLDSVGTSSSLWMP 93
Query: 293 KLNDFDPSSMLLRQRIIFLGSQVDDFSADVIISQLLLLDAEDSTKDIKLFINSPGGSVTA 472 + D D +SMLLRQRI+FLGSQVDD SAD IISQLLLLD EDSTKDIKLFINSPGGSVTA Sbjct: 94 RPEDLDTTSMLLRQRIVFLGSQVDDVSADFIISQLLLLDLEDSTKDIKLFINSPGGSVTA 153
Query: 473 GMGIYDAIKLCKADVSTVCFGLAASMGAFLLASGT 577 GMGIYDA+KLCKADVSTVCFGLAASMGAFLLASGT Sbjct: 154 GMGIYDAMKLCKADVSTVCFGLAASMGAFLLASGT 188
>tr|A9NTW0|A9NTW0_PICSI ATP-dependent Clp protease proteolytic subunit OS=Picea sitchensis PE=2 SV=1 Length = 341
Score = 167 bits (422), Expect = 5e-40 Identities = 98/155 (63%), Positives = 109/155 (70%), Gaps = 16/155 (10%) Frame = +2
Query: 161 SQGHLSLPRTCRISRFNPSSLRRGSCRVQAIAP-------------SPVSVTAPS---MS 292 ++ LS P C + + +S R+QA+ P S SV S M Sbjct: 34 NKNSLSSPPCCFVCSCSSASHLGSRQRMQAVKPIGALSSSRGSLSASLDSVGTSSSLWMP 93
Query: 293 KLNDFDPSSMLLRQRIIFLGSQVDDFSADVIISQLLLLDAEDSTKDIKLFINSPGGSVTA 472 + D D +SMLLRQRI+FLGSQVDD SAD IISQLLLLD EDSTKDIKLFINSPGGSVTA Sbjct: 94 RPEDLDTTSMLLRQRIVFLGSQVDDVSADFIISQLLLLDLEDSTKDIKLFINSPGGSVTA 153
Query: 473 GMGIYDAIKLCKADVSTVCFGLAASMGAFLLASGT 577 GMGIYDA+KLCKADVSTVCFGLAASMGAFLLASGT Sbjct: 154 GMGIYDAMKLCKADVSTVCFGLAASMGAFLLASGT 188
>tr|A9T6I1|A9T6I1_PHYPA ATP-dependent Clp protease proteolytic subunit OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_141000 PE=3 SV=1 Length = 243
Score = 164 bits (416), Expect = 2e-39 Identities = 80/96 (83%), Positives = 91/96 (94%) Frame = +2
Query: 290 SKLNDFDPSSMLLRQRIIFLGSQVDDFSADVIISQLLLLDAEDSTKDIKLFINSPGGSVT 469 ++L D DP +MLL+QRI+FLGSQVDDFSAD+IISQ+LLLDA+D T+DIKLFINSPGGSVT Sbjct: 14 ARLQDLDPGTMLLQQRILFLGSQVDDFSADLIISQMLLLDAQDPTRDIKLFINSPGGSVT 73
Query: 470 AGMGIYDAIKLCKADVSTVCFGLAASMGAFLLASGT 577 AGMGIYDA+KLCKADVSTVCFGLAASMGAFLL +GT Sbjct: 74 AGMGIYDAMKLCKADVSTVCFGLAASMGAFLLTAGT 109
>tr|B6TBU2|B6TBU2_MAIZE ATP-dependent Clp protease proteolytic subunit 1 OS=Zea mays PE=2 SV=1 Length = 285
Score = 163 bits (412), Expect = 7e-39 Identities = 83/109 (76%), Positives = 95/109 (87%), Gaps = 2/109 (1%) Frame = +2
Query: 257 PSPVSVTAPSMSK--LNDFDPSSMLLRQRIIFLGSQVDDFSADVIISQLLLLDAEDSTKD 430 PS ++V P+ K L + D ++MLLRQRI+FLGS VDD SAD+IISQLLLLDAED TKD Sbjct: 54 PSRLAVARPAARKACLEELDTTNMLLRQRIVFLGSPVDDTSADLIISQLLLLDAEDQTKD 113
Query: 431 IKLFINSPGGSVTAGMGIYDAIKLCKADVSTVCFGLAASMGAFLLASGT 577 IKLFINSPGGS+TAGMG+YDA+K CKADVSTVCFGLAASMGAFLLA+GT Sbjct: 114 IKLFINSPGGSITAGMGVYDAMKFCKADVSTVCFGLAASMGAFLLAAGT 162
>tr|A7PR54|A7PR54_VITVI ATP-dependent Clp protease proteolytic subunit OS=Vitis vinifera GN=GSVIVT00022336001 PE=3 SV=1 Length = 320
Score = 162 bits (410), Expect = 1e-38 Identities = 94/157 (59%), Positives = 109/157 (69%), Gaps = 8/157 (5%) Frame = +2
Query: 131 NRFLAAERVRSQGHLSLPRTCRISR-------FNPSSLRRGSCRVQAIAPSPVSVTAPS- 286 +R L R S L LP T R SR SS R + S S +AP+ Sbjct: 14 SRPLCFNRSPSSSSLWLPSTSRSSRKGRAVSMVKASSASRPTLASNWDLSSLQSASAPTW 73
Query: 287 MSKLNDFDPSSMLLRQRIIFLGSQVDDFSADVIISQLLLLDAEDSTKDIKLFINSPGGSV 466 + + D D ++MLLRQRI+FLGSQVDD +AD++ISQLL LDAED KDIKLFINSPGGSV Sbjct: 74 LPRFEDLDTTNMLLRQRIVFLGSQVDDMTADLVISQLLFLDAEDQEKDIKLFINSPGGSV 133
Query: 467 TAGMGIYDAIKLCKADVSTVCFGLAASMGAFLLASGT 577 TAG+GIYDA+KLCKADVSTVC GLAASMGAFLLASG+ Sbjct: 134 TAGLGIYDAMKLCKADVSTVCLGLAASMGAFLLASGS 170
>tr|Q5QMT1|Q5QMT1_ORYSJ Putative ATP-dependent Clp protease, proteolytic subunit (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica GN=OSJNBa0094H06.31 PE=4 SV=1 Length = 308
Score = 160 bits (405), Expect = 5e-38 Identities = 82/125 (65%), Positives = 97/125 (77%) Frame = +2
Query: 203 RFNPSSLRRGSCRVQAIAPSPVSVTAPSMSKLNDFDPSSMLLRQRIIFLGSQVDDFSADV 382 R + S+ RR + + A +L + D ++MLLRQRI+FLGS VDD SAD+ Sbjct: 36 RASASAARRTLSSAWELPGPSAARPAARKPRLEELDTTNMLLRQRIVFLGSPVDDMSADL 95
Query: 383 IISQLLLLDAEDSTKDIKLFINSPGGSVTAGMGIYDAIKLCKADVSTVCFGLAASMGAFL 562 IISQLLLLDAED TKDIKLFINSPGGS+TAGMG+YDA+K CKAD+STVCFGLAASMGAFL Sbjct: 96 IISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVYDAMKFCKADISTVCFGLAASMGAFL 155
Query: 563 LASGT 577 LA+GT Sbjct: 156 LAAGT 160
>tr|Q0JMF9|Q0JMF9_ORYSJ ATP-dependent Clp protease proteolytic subunit OS=Oryza sativa subsp. japonica GN=Os01g0507900 PE=2 SV=1 Length = 314
Score = 160 bits (405), Expect = 5e-38 Identities = 82/125 (65%), Positives = 97/125 (77%) Frame = +2
Query: 203 RFNPSSLRRGSCRVQAIAPSPVSVTAPSMSKLNDFDPSSMLLRQRIIFLGSQVDDFSADV 382 R + S+ RR + + A +L + D ++MLLRQRI+FLGS VDD SAD+ Sbjct: 42 RASASAARRTLSSAWELPGPSAARPAARKPRLEELDTTNMLLRQRIVFLGSPVDDMSADL 101
Query: 383 IISQLLLLDAEDSTKDIKLFINSPGGSVTAGMGIYDAIKLCKADVSTVCFGLAASMGAFL 562 IISQLLLLDAED TKDIKLFINSPGGS+TAGMG+YDA+K CKAD+STVCFGLAASMGAFL Sbjct: 102 IISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVYDAMKFCKADISTVCFGLAASMGAFL 161
Query: 563 LASGT 577 LA+GT Sbjct: 162 LAAGT 166
>tr|A2WQJ7|A2WQJ7_ORYSI ATP-dependent Clp protease proteolytic subunit OS=Oryza sativa subsp. indica GN=OsI_02123 PE=3 SV=1 Length = 308
Score = 160 bits (405), Expect = 5e-38 Identities = 82/125 (65%), Positives = 97/125 (77%) Frame = +2
Query: 203 RFNPSSLRRGSCRVQAIAPSPVSVTAPSMSKLNDFDPSSMLLRQRIIFLGSQVDDFSADV 382 R + S+ RR + + A +L + D ++MLLRQRI+FLGS VDD SAD+ Sbjct: 36 RASASAARRTLSSAWELPGPSAARPAARKPRLEELDTTNMLLRQRIVFLGSPVDDMSADL 95
Query: 383 IISQLLLLDAEDSTKDIKLFINSPGGSVTAGMGIYDAIKLCKADVSTVCFGLAASMGAFL 562 IISQLLLLDAED TKDIKLFINSPGGS+TAGMG+YDA+K CKAD+STVCFGLAASMGAFL Sbjct: 96 IISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVYDAMKFCKADISTVCFGLAASMGAFL 155
Query: 563 LASGT 577 LA+GT Sbjct: 156 LAAGT 160
>tr|B7FH45|B7FH45_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 297
Score = 158 bits (400), Expect = 2e-37 Identities = 77/100 (77%), Positives = 89/100 (89%) Frame = +2
Query: 278 APSMSKLNDFDPSSMLLRQRIIFLGSQVDDFSADVIISQLLLLDAEDSTKDIKLFINSPG 457 +P + K + D ++MLLRQRI+FLGSQVDD +AD +ISQLL LDA+D TKDIKLFINSPG Sbjct: 69 SPWLPKFEELDTTNMLLRQRIVFLGSQVDDMTADFVISQLLFLDADDPTKDIKLFINSPG 128
Query: 458 GSVTAGMGIYDAIKLCKADVSTVCFGLAASMGAFLLASGT 577 GSVTAGMG+YDA+KLCKADVSTVC GLAASMGAFLLA+GT Sbjct: 129 GSVTAGMGVYDAMKLCKADVSTVCLGLAASMGAFLLAAGT 168
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