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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953009
Clone id TST38A01NGRL0015_K04
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_K04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAGAGAGAGAGAGAGAGAGAGAGGAGATAAGATGTCGTGCTGCAATGGTAACTGTGGGTG
CGGCGCAAACTGTCAATGCGCCAGCGGCTGCAAGGGGTGCGGCCGAACTGACAGCCTTGT
GCTGTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGCCTCCGTCTGCCCCAGCTATGA
AAGGGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTATCTTGGCTCTCCTACTTCTTG
TTTCCCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGGGGTTGCCTTAATAACACCAAA
AATAATGTATTTGTATTTAGTTAATAGTCAGTCGTGCAATTAACATCCATGGATCGCTTG
TACATAGTATGCTCACCTTTGTAATCTTGGAATTTGGTAATGATAATGATAATGGCTTAA
GCCAAGCCATAAAATGCAACACCTTTAGCTTAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 75
Score (bit) 34.3
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953009|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_K04, 5'
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    34   0.25 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    33   0.74 
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    32   1.3  
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    32   1.3  
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT...    30   6.3  
sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol t...    29   8.0  
sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacteri...    29   8.2  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -2

Query: 258 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 79
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 78  H*QFAPHPQLPLQHD 34
               A HP L +  D
Sbjct: 199 ----ARHPNLDMFDD 209


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 258 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 79
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 78  H 76
           H
Sbjct: 201 H 201


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -2

Query: 258 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 79
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 78  H*QFAPHPQLPLQHD 34
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -2

Query: 258 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 79
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 78  H*QFAPHPQLPLQHD 34
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
            1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
          Length = 1250

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 231  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-LQPLAH*QFAPHP 55
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P  QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 54   QLP 46
              P
Sbjct: 1033 AAP 1035


>sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol
           transfer protein 2 OS=Homo sapiens GN=PITPNM2 PE=1 SV=1
          Length = 1349

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 194 NLEPFHSWGRRRQWH*EREAPPSTAQGCQFGRTPCSRWRIDSLRR 60
           N EP    G ++QW    ++  S+ +G    R   S WR+ S+ R
Sbjct: 291 NGEPLVGRGLKKQWSTSSKSSRSSKRGASPSRHSISEWRMQSIAR 335


>sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacterium
           populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
           GN=glmM PE=3 SV=1
          Length = 446

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 151 CHCLR-LPQL*KGSRFRSGEHL 213
           CHC   LPQ+ K  RFRSGE L
Sbjct: 364 CHCFEPLPQILKNVRFRSGEPL 385
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 23
Score (bit) 39.3
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953009|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_K04, 5'
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.100
tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas reinha...    34   3.2  
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul...    33   9.3  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = -2

Query: 99  HPLQPLAH*QFAPHPQLPLQHDI 31
           HP QPL H Q  PHPQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_194715 PE=4 SV=1
          Length = 547

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = +1

Query: 52  LWVRRKLSMRQRLQGVRPN--------*QPCAVEGGASRSQCHCLRLPQL*KGSRFRSGE 207
           L +RR L ++ RLQG +PN         QP  +   AS    H L  P      R RSG+
Sbjct: 44  LELRRALELQCRLQGPQPNATGPVLQPRQPLPLPPAASPQLLHDLGTPPTQSSGRLRSGQ 103

Query: 208 HLWVSW 225
             W  W
Sbjct: 104 LTWRYW 109


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 258 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 79
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 78  H 76
           H
Sbjct: 201 H 201