DK953041 |
Clone id |
TST38A01NGRL0015_L13 |
Library |
TST38 |
Length |
768 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_L13. 5' end sequence. |
Accession |
DK953041 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL64Contig1 |
Sequence |
CCTTGTTATTAGCAGGGATACCAATGGGAAGCACAGTATCGGTTGTCTTTTTTGGATGCT AGCTCGCATGGTTCTCCAGATGAGGGGAACTATTTCTCCACGCCAGCCGTGGGATGTCAT GGTGGATCTGTTCTTCTATCGTGAGCCAGAGGAAGCCAAGGAGCGTGAGGAGGAGGAAGG TGCTGCACCAGAATTTGCACCTACAGAGTATAATGCGCCTCCTACAATTGCTGCCGTCGC AGCAGCTCCTGACCAATGGGGTGAGGGAGGTGATGCTGGAAACTGGGAGCCAGCAGTGCC AGCCGCAGCAGCTGCTGCGGTGCAGGCCCCTGCCCAAGAGTGGACTGGAGCTGCTGCTCC TGCCCAAGGATGGGATGCTGCTCCTGCTCCTGCACCTGCCCCTGCCCCGGCTCCGACTGG CACCTATTCTGCAGGCATGGCTCCTTCTGGAGCTGGATGGGATTCTGCTCCTGCTGACTG GAATCCCACTCCTCAGTAATCTTCATTATTATCAATTTTGTAGTCTTGAGTTGACTGGCC TTGGATAAAAGCAAGAGCTGTGCTTTCGGAGATATTTGAACTCTAGATTGTCCTTTATTC ACGAGGTGCAACTTTTCTTAAAAGTTGCTGGGTTCAAGTTTTGATTCTTGCTACCTTTTG ATTGGTTGTCTCCTAAAAATGAATAATGCCGATGTAATATTTGACAATATATTTTTTTTT CCTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZSR8 |
Definition |
sp|Q9ZSR8|RSSA_BRANA 40S ribosomal protein SA OS=Brassica napus |
Align length |
45 |
Score (bit) |
80.5 |
E-value |
9.0e-15 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S9Z5 |
Definition |
tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
175 |
Score (bit) |
86.7 |
E-value |
1.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953041|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_L13, 5' (729 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomit... 87 1e-15 tr|A9P0C9|A9P0C9_PICSI Putative uncharacterized protein OS=Picea... 80 1e-13 tr|A9NV56|A9NV56_PICSI Putative uncharacterized protein OS=Picea... 80 1e-13 tr|A9TDH1|A9TDH1_PHYPA Predicted protein OS=Physcomitrella paten... 79 4e-13 tr|A9S4V0|A9S4V0_PHYPA Predicted protein OS=Physcomitrella paten... 79 4e-13 tr|A9P891|A9P891_POPTR Putative uncharacterized protein OS=Popul... 78 5e-13 tr|Q2V4D3|Q2V4D3_ARATH Uncharacterized protein At1g72370.2 OS=Ar... 78 7e-13 tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomit... 78 7e-13 tr|B7FID3|B7FID3_MEDTR Putative uncharacterized protein OS=Medic... 77 9e-13 tr|A7P6D1|A7P6D1_VITVI Chromosome chr9 scaffold_7, whole genome ... 76 3e-12 tr|A5BUU4|A5BUU4_VITVI Putative uncharacterized protein OS=Vitis... 76 3e-12 tr|A9P801|A9P801_POPTR Putative uncharacterized protein OS=Popul... 75 4e-12 tr|Q8H3I3|Q8H3I3_ORYSJ Os07g0616600 protein OS=Oryza sativa subs... 75 6e-12 tr|A9PC77|A9PC77_POPTR Putative uncharacterized protein OS=Popul... 75 6e-12 tr|A9P906|A9P906_POPTR Putative uncharacterized protein OS=Popul... 75 6e-12 tr|A2YNQ0|A2YNQ0_ORYSI Putative uncharacterized protein OS=Oryza... 75 6e-12 tr|A2XHR6|A2XHR6_ORYSI Putative uncharacterized protein OS=Oryza... 75 6e-12 tr|Q01CH5|Q01CH5_OSTTA B1056G08.113 gene product (ISS) OS=Ostreo... 74 8e-12 tr|B6TIC4|B6TIC4_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 74 8e-12 tr|B6SSF3|B6SSF3_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 74 8e-12 tr|B4FZ84|B4FZ84_MAIZE Putative uncharacterized protein OS=Zea m... 74 8e-12 tr|Q94HF0|Q94HF0_ORYSA Putative 40S Ribosomal protein OS=Oryza s... 74 1e-11 tr|Q10QU9|Q10QU9_ORYSJ cDNA clone:001-007-D06, full insert seque... 74 1e-11 tr|Q10QU8|Q10QU8_ORYSJ 40S ribosomal protein SA, putative, expre... 74 1e-11 tr|Q0DUK0|Q0DUK0_ORYSJ Os03g0182600 protein (Fragment) OS=Oryza ... 74 1e-11 tr|A2XD89|A2XD89_ORYSI Putative uncharacterized protein OS=Oryza... 74 1e-11 tr|A4RUK2|A4RUK2_OSTLU Ribosomal protein Sa, component of cytoso... 74 1e-11 tr|Q38M60|Q38M60_SOLTU Ribosome-associated protein p40-like OS=S... 72 3e-11 tr|Q308A0|Q308A0_SOLTU P40-like protein OS=Solanum tuberosum PE=... 72 3e-11 tr|B4G194|B4G194_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 72 3e-11
>tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_126323 PE=3 SV=1 Length = 305
Score = 86.7 bits (213), Expect = 1e-15 Identities = 61/175 (34%), Positives = 70/175 (40%), Gaps = 10/175 (5%) Frame = +2
Query: 2 LVISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXX 181 + I + GKHSIG LFW+LARMVLQMRGTIS +PWDVMVDLFFYR Sbjct: 151 IAIPANNKGKHSIGALFWLLARMVLQMRGTISAAKPWDVMVDLFFYREPDEGKDRDEEEA 210
Query: 182 XXXXXXXXXYNXXXXXXXXXXXXDQWG-EGGDAGNWE--XXXXXXXXXXXXXXXXEWTGX 352 Y QWG E +AG WE EWTG Sbjct: 211 GAAEFAAVEY---PAPALGMVGDAQWGPEAAEAGQWEADASAVATGAVPAGVPAVEWTGA 267
Query: 353 XXXXXXXXXXXXXXXXXXXXXTGTYSAGMAPSG---AGWD----SAPADWNPTPQ 496 + G AP+ AGW+ +APA W P PQ Sbjct: 268 AVPAG-----------------AGWDVGAAPAAAPPAGWETAAPAAPAGWEPAPQ 305
>tr|A9P0C9|A9P0C9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 319
Score = 80.5 bits (197), Expect = 1e-13 Identities = 52/162 (32%), Positives = 56/162 (34%), Gaps = 2/162 (1%) Frame = +2
Query: 8 ISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXX 187 I + GKHSIGCLFWMLARMVLQMRGTI P WD+MVDLFFYR Sbjct: 161 IPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYR-----EPEEAKEHED 215
Query: 188 XXXXXXXYNXXXXXXXXXXXXDQWGEGGDAGNWEXXXXXXXXXXXXXXXXEWTGXXXXXX 367 Y DQWG W +W G Sbjct: 216 EEAPVAEYTADYTAPALALPGDQWGADIPDAQWGAPEPSAIPAVPALAASDWPGTAVPIA 275
Query: 368 XXXXXXXXXXXXXXXXTGTYSAGMAPSG--AGWDSAPADWNP 487 S P+ GWDSA W P Sbjct: 276 AEGWDTAPAPLPPAAEWNAASMPSIPAAPVPGWDSAQPGWTP 317
>tr|A9NV56|A9NV56_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 319
Score = 80.5 bits (197), Expect = 1e-13 Identities = 52/162 (32%), Positives = 56/162 (34%), Gaps = 2/162 (1%) Frame = +2
Query: 8 ISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXX 187 I + GKHSIGCLFWMLARMVLQMRGTI P WD+MVDLFFYR Sbjct: 161 IPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYR-----EPEEAKEHED 215
Query: 188 XXXXXXXYNXXXXXXXXXXXXDQWGEGGDAGNWEXXXXXXXXXXXXXXXXEWTGXXXXXX 367 Y DQWG W +W G Sbjct: 216 EEAPVAEYTADYTAPALALPGDQWGADIPDAQWGAPEPSAIPAVPALAASDWPGTAVPIA 275
Query: 368 XXXXXXXXXXXXXXXXTGTYSAGMAPSG--AGWDSAPADWNP 487 S P+ GWDSA W P Sbjct: 276 AEGWDTAPAPLPPAAEWNAASMPSIPAAQVPGWDSAQPGWTP 317
>tr|A9TDH1|A9TDH1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_193949 PE=3 SV=1 Length = 292
Score = 78.6 bits (192), Expect = 4e-13 Identities = 44/97 (45%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = +2
Query: 2 LVISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXX 181 + I + GKHSIG LFW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 150 IAIPANNKGKHSIGALFWLLARMVLQMRGTISAAHPWDVMVDLFFYREPDEGKDREEEEG 209
Query: 182 XXXXXXXXXYNXXXXXXXXXXXXDQWG-EGGDAGNWE 289 Y QWG E +AG WE Sbjct: 210 GAAEFAAVEY---AAPTLALGGDAQWGPEAAEAGQWE 243
>tr|A9S4V0|A9S4V0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_105781 PE=3 SV=1 Length = 292
Score = 78.6 bits (192), Expect = 4e-13 Identities = 44/97 (45%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = +2
Query: 2 LVISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXX 181 + I + GKHSIG LFW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 150 IAIPANNKGKHSIGALFWLLARMVLQMRGTISAAHPWDVMVDLFFYREPDEGKDREEEEG 209
Query: 182 XXXXXXXXXYNXXXXXXXXXXXXDQWG-EGGDAGNWE 289 Y QWG E +AG WE Sbjct: 210 GAAEFAAVEY---AAPTLALGGDAQWGPEAAEAGQWE 243
>tr|A9P891|A9P891_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 312
Score = 78.2 bits (191), Expect = 5e-13 Identities = 35/45 (77%), Positives = 37/45 (82%) Frame = +2
Query: 8 ISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 142 I + GKHSIGCLFW+LARMVLQMRGTI P WDVMVDLFFYR Sbjct: 170 IPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 214
>tr|Q2V4D3|Q2V4D3_ARATH Uncharacterized protein At1g72370.2 OS=Arabidopsis thaliana GN=At1g72370 PE=3 SV=1 Length = 294
Score = 77.8 bits (190), Expect = 7e-13 Identities = 35/45 (77%), Positives = 38/45 (84%) Frame = +2
Query: 8 ISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 142 I + GKHSIGCLFW+LARMVLQMRGTI+ Q WDVMVDLFFYR Sbjct: 165 IPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYR 209
>tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_46426 PE=3 SV=1 Length = 278
Score = 77.8 bits (190), Expect = 7e-13 Identities = 35/47 (74%), Positives = 38/47 (80%) Frame = +2
Query: 2 LVISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 142 + I + GKHSIG LFW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 148 IAIPANNKGKHSIGALFWLLARMVLQMRGTISAAHPWDVMVDLFFYR 194
>tr|B7FID3|B7FID3_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 299
Score = 77.4 bits (189), Expect = 9e-13 Identities = 35/45 (77%), Positives = 37/45 (82%) Frame = +2
Query: 8 ISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 142 I + GKHSIGCLFW+LARMVLQMRGTI P WDVMVDLFFYR Sbjct: 164 IPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYR 208
>tr|A7P6D1|A7P6D1_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1 Length = 274
Score = 75.9 bits (185), Expect = 3e-12 Identities = 34/45 (75%), Positives = 37/45 (82%) Frame = +2
Query: 8 ISRDTNGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 142 I + GKHSIGCLFW+LARMVLQMR TI+P WDVMVDLFFYR Sbjct: 161 IPANNKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYR 205
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