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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953047
Clone id TST38A01NGRL0015_L19
Library
Length 600
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_L19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCATTGAGCTAGCTGGCGTCAAAGGTTTTGTGGCAGTCCATCAGCAAAAGCGCTTCGTTA
TCTTTTGGGCGGCGCACACACAGAGAAGAACCCCTCCGGCATCCCGTTGATTTTTTCGCA
AGTACAATGATATCACCAACATGATCAATGAACGCTCTCCCGTTATCAGGCGGAGCCCGC
AGCAGCATTACCAGTATGATCGCTTCTATCCCAATCCCAACCCTAACCCTAAACCTCTTC
CCAAGCACCATGCTTCCATGGATTGGACCGGTTCAGGAGAGCCCATGTCCGGCCACTCCC
AATTTTCCCATCAGGAGAAAGATTGGGGGCTCAACCTAGCATCATCCAACACAGGATCAT
CATTACCCTCTTACATGGTCTCAGCGTCTGGTGAAGCTAGAGGAGGAGGCAGTAGATTTA
AGTCTAGGGCTTTGGAGTTGCCGTCCGTTTCTACAGCGGGAGCTGCAGCAGCCATGAGAG
ATGTTTACAATCGGACCAAGGTCGTTGTGAGGCACCTACCACCAGGCTTGTCAGAATCTG
CTTTTATGGAACAAATTGCATCGCGGTTTTCTTCCATGTACAACATGGTTTCCTTTTGTC
■■Homology search results ■■ -
sp_hit_id Q15059
Definition sp|Q15059|BRD3_HUMAN Bromodomain-containing protein 3 OS=Homo sapiens
Align length 65
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953047|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_L19, 5'
         (600 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15059|BRD3_HUMAN Bromodomain-containing protein 3 OS=Homo sa...    33   1.1  
sp|Q8K2F0|BRD3_MOUSE Bromodomain-containing protein 3 OS=Mus mus...    32   2.5  
sp|Q8CFT2|SET1B_MOUSE Histone-lysine N-methyltransferase SETD1B ...    32   3.2  
sp|P42519|STAR_DROME Protein Star OS=Drosophila melanogaster GN=...    31   5.5  
sp|O13023|HHEX_XENLA Hematopoietically-expressed homeobox protei...    31   5.5  
sp|Q4KLI1|ZKSC1_RAT Zinc finger protein with KRAB and SCAN domai...    30   7.2  
sp|Q8BGS3|ZKSC1_MOUSE Zinc finger protein with KRAB and SCAN dom...    30   7.2  
sp|Q9VFJ0|CP131_DROME Probable cytochrome P450 313a1 OS=Drosophi...    30   7.2  
sp|Q6NSR3|ADCK2_MOUSE Uncharacterized aarF domain-containing pro...    30   7.2  
sp|Q9USY4|ABP2_SCHPO ARS-binding protein 2 OS=Schizosaccharomyce...    30   7.2  
sp|Q94425|SYIM_CIOIN Probable isoleucyl-tRNA synthetase, mitocho...    30   9.3  

>sp|Q15059|BRD3_HUMAN Bromodomain-containing protein 3 OS=Homo
           sapiens GN=BRD3 PE=1 SV=1
          Length = 726

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +1

Query: 118 ASTMISPT*SMNALPLSGGARSSITSMIASIPIPTLTLNLFPSTMLPWIGPVQESPCPAT 297
           A + +SP     ++P +     S T +IA+ P+PT+T N+   T +P + P    P PAT
Sbjct: 173 AVSSVSPATPFQSVPPT----VSQTPVIAATPVPTITANV---TSVP-VPPAAAPPPPAT 224

Query: 298 PNFPI 312
           P  P+
Sbjct: 225 PIVPV 229


>sp|Q8K2F0|BRD3_MOUSE Bromodomain-containing protein 3 OS=Mus
           musculus GN=Brd3 PE=1 SV=2
          Length = 726

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +1

Query: 184 SITSMIASIPIPTLTLNLFPSTMLPWIGPVQESPCPATPNFPI 312
           S T +IA+ P+PT+T N+   T +P + P    P PATP  P+
Sbjct: 190 SQTPVIAATPVPTITANV---TSVP-VPPPAAPPPPATPIVPV 228


>sp|Q8CFT2|SET1B_MOUSE Histone-lysine N-methyltransferase SETD1B
            OS=Mus musculus GN=Setd1b PE=2 SV=2
          Length = 1985

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 28/90 (31%), Positives = 36/90 (40%)
 Frame = +1

Query: 58   LSFGRRTHREEPLRHPVDFFASTMISPT*SMNALPLSGGARSSITSMIASIPIPTLTLNL 237
            L  GRR  R  PL  PV    + +  P      LPL+             +P+P L    
Sbjct: 1469 LPTGRRDERTGPLASPV-LLETGLPLPLPLPLPLPLA-------------LPVPVLRAQP 1514

Query: 238  FPSTMLPWIGPVQESPCPATPNFPIRRKIG 327
             P   LP + P   +PCP     PI+RK G
Sbjct: 1515 RPPPQLPPLLPATLAPCPT----PIKRKPG 1540


>sp|P42519|STAR_DROME Protein Star OS=Drosophila melanogaster GN=S
           PE=1 SV=1
          Length = 597

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 169 GGARSSITSMIASIPIPTLTLNLFPSTMLPWIGPVQESPCPATPNFPIRRKIGGST*HHP 348
           GG +S ++S+I+S  + T++  L   T LP     Q   C  +     R +       HP
Sbjct: 165 GGDQSDLSSVISSPSVSTVSSPLSTPTRLPQALQQQLHCCQKSTGMESRARTSPQQIQHP 224

Query: 349 TQDHH 363
            + HH
Sbjct: 225 HRQHH 229


>sp|O13023|HHEX_XENLA Hematopoietically-expressed homeobox protein
           hhex OS=Xenopus laevis GN=hhex PE=2 SV=1
          Length = 272

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
 Frame = +1

Query: 91  PLRHPVDFFASTMISPT*SMNALPLSGGARSSITSMIASIPIPTLTL--NLFPSTMLPWI 264
           PL+HP  F+   ++               R+S ++   ++P PTL    + F S +  + 
Sbjct: 22  PLQHPTPFYIDDIL--------------GRNSASNGTPALPTPTLPSPNSSFTSLVATYR 67

Query: 265 GPVQESPCPATPNF-----PIRRKIGGST*HHPTQDHHYPLT-WSQRLVKLEEEAVDLSL 426
            P+ E P P  P F      +    G ST   P      P++ ++  L++ +     L  
Sbjct: 68  TPIYE-PTPIHPAFTHPGAALAASYGASTYASPLYPFSRPVSDYTHALIRHDSLGKPL-- 124

Query: 427 GLWSCRPFLQRELQQ 471
            LWS  PF+QR L +
Sbjct: 125 -LWS--PFIQRPLHK 136


>sp|Q4KLI1|ZKSC1_RAT Zinc finger protein with KRAB and SCAN domains
           1 OS=Rattus norvegicus GN=Zkscan1 PE=2 SV=1
          Length = 562

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 379 SQRLVKLEEEAVDLSLGLWSCRPFLQRELQQP*EMFTIG 495
           SQ +VK+E+ AV L L  W C+   +R L +      +G
Sbjct: 222 SQAMVKIEDMAVSLILEEWGCQNLARRNLNRDSRQMNLG 260


>sp|Q8BGS3|ZKSC1_MOUSE Zinc finger protein with KRAB and SCAN
           domains 1 OS=Mus musculus GN=Zkscan1 PE=2 SV=1
          Length = 561

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 379 SQRLVKLEEEAVDLSLGLWSCRPFLQRELQQP*EMFTIG 495
           SQ +VK+E+ AV L L  W C+   +R L +      +G
Sbjct: 221 SQAMVKIEDMAVSLILEEWGCQNLARRNLNRDSRQMNLG 259


>sp|Q9VFJ0|CP131_DROME Probable cytochrome P450 313a1 OS=Drosophila
           melanogaster GN=Cyp313a1 PE=2 SV=2
          Length = 492

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 157 LPLSGGARSSITSMIASIPIPTLTLNLFPSTMLPWIGPV 273
           LP+ G +  +I +    +   T  LN + ST+L W+GPV
Sbjct: 38  LPILGSSLENIITYKRKLSFRTKYLNKYGSTILTWMGPV 76


>sp|Q6NSR3|ADCK2_MOUSE Uncharacterized aarF domain-containing
           protein kinase 2 OS=Mus musculus GN=Adck2 PE=2 SV=1
          Length = 617

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 354 LCWMMLG*APNL-SPDGKIGSGRTWALLNRSNPW 256
           LCW +LG  P L S  G +G G   +L  R   W
Sbjct: 39  LCWFLLGTLPKLISAHGSVGEGAPGSLCQRKTHW 72


>sp|Q9USY4|ABP2_SCHPO ARS-binding protein 2 OS=Schizosaccharomyces
           pombe GN=abp2 PE=1 SV=1
          Length = 527

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 184 SITSMIASIPIPTLT--LNLFPSTMLPWIGPVQESPCPATPNF 306
           S  S +A +P+ T++  L+ +  T+  ++ P + SP P TPNF
Sbjct: 375 SAFSHVARLPMETVSQLLSHYTETISQYLPPSETSPIPKTPNF 417
tr_hit_id A7QGI3
Definition tr|A7QGI3|A7QGI3_VITVI Chromosome undetermined scaffold_92, whole genome shotgun sequence OS=Vitis vinifera
Align length 42
Score (bit) 52.0
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953047|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_L19, 5'
         (600 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QGI3|A7QGI3_VITVI Chromosome undetermined scaffold_92, whol...    52   3e-05
tr|A5BSM7|A5BSM7_VITVI Putative uncharacterized protein OS=Vitis...    52   3e-05
tr|A7QC83|A7QC83_VITVI Chromosome undetermined scaffold_77, whol...    50   1e-04
tr|Q9FX10|Q9FX10_ARATH F12G12.20 protein OS=Arabidopsis thaliana...    48   5e-04
tr|Q9FVW4|Q9FVW4_ARATH Putative uncharacterized protein T15K4.3 ...    48   5e-04
tr|B3H5N7|B3H5N7_ARATH Uncharacterized protein At1g33980.2 OS=Ar...    48   5e-04
tr|A9RK13|A9RK13_PHYPA Predicted protein OS=Physcomitrella paten...    48   5e-04
tr|A7QGI8|A7QGI8_VITVI Chromosome undetermined scaffold_92, whol...    46   0.001
tr|A5AQH0|A5AQH0_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|Q7XQG3|Q7XQG3_ORYSJ OJ000114_01.14 protein OS=Oryza sativa su...    44   0.005
tr|Q0JD00|Q0JD00_ORYSJ Os04g0440100 protein OS=Oryza sativa subs...    44   0.005
tr|Q01K74|Q01K74_ORYSA H0525C06.10 protein OS=Oryza sativa GN=H0...    44   0.005
tr|B8AU35|B8AU35_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A3AU56|A3AU56_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.005
tr|Q1SL19|Q1SL19_MEDTR Nonsense-mediated decay UPF3 OS=Medicago ...    40   0.079
tr|A9TJU8|A9TJU8_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.079
tr|Q062M8|Q062M8_9SYNE DNA-directed DNA polymerase OS=Synechococ...    37   0.68 
tr|B1YXZ8|B1YXZ8_BURA4 Phosphatidylinositol diacylglycerol-lyase...    35   2.5  
tr|A8ILB6|A8ILB6_CHLRE UPF3 protein OS=Chlamydomonas reinhardtii...    35   4.3  
tr|B3MCL9|B3MCL9_DROAN GF12056 OS=Drosophila ananassae GN=GF1205...    35   4.3  
tr|B7Q7R2|B7Q7R2_IXOSC Regulator of nonsense transcripts 3B, put...    34   5.6  
tr|Q65358|Q65358_NPVMB Putative uncharacterized protein (Fragmen...    34   5.7  
tr|Q08DT1|Q08DT1_BOVIN Bromodomain containing 3 OS=Bos taurus GN...    34   7.5  
tr|A8NG27|A8NG27_COPC7 Putative uncharacterized protein OS=Copri...    34   7.5  
tr|A4FH66|A4FH66_SACEN Drug resistance transporter EmrB/QacA sub...    33   9.6  
tr|A9PJI8|A9PJI8_POPJC Putative uncharacterized protein OS=Popul...    33   9.8  

>tr|A7QGI3|A7QGI3_VITVI Chromosome undetermined scaffold_92, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00038330001 PE=4 SV=1
          Length = 357

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = +3

Query: 474 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFC 599
           M+   +RTKV+VRHLPP +SE+AF+EQI + F   Y +V FC
Sbjct: 1   MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFC 42


>tr|A5BSM7|A5BSM7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042717 PE=4 SV=1
          Length = 437

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = +3

Query: 474 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFC 599
           M+   +RTKV+VRHLPP +SE+AF+EQI + F   Y +V FC
Sbjct: 76  MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFC 117


>tr|A7QC83|A7QC83_VITVI Chromosome undetermined scaffold_77, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035287001 PE=4 SV=1
          Length = 519

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +3

Query: 474 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSF 596
           M+   +RTKVVVRHLPP +SE+AF+EQI + F   Y +V F
Sbjct: 1   MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKF 41


>tr|Q9FX10|Q9FX10_ARATH F12G12.20 protein OS=Arabidopsis thaliana
           GN=F12G12.20 PE=4 SV=1
          Length = 525

 Score = 47.8 bits (112), Expect = 5e-04
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +3

Query: 474 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSF 596
           M++   + KVVVRHLPP LS+S  + QI  RF+  YN VSF
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSF 41


>tr|Q9FVW4|Q9FVW4_ARATH Putative uncharacterized protein T15K4.3
           (Putative uncharacterized protein At1g33980)
           OS=Arabidopsis thaliana GN=At1g33980 PE=2 SV=1
          Length = 482

 Score = 47.8 bits (112), Expect = 5e-04
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +3

Query: 474 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSF 596
           M++   + KVVVRHLPP LS+S  + QI  RF+  YN VSF
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSF 41


>tr|B3H5N7|B3H5N7_ARATH Uncharacterized protein At1g33980.2
           OS=Arabidopsis thaliana GN=At1g33980 PE=4 SV=1
          Length = 484

 Score = 47.8 bits (112), Expect = 5e-04
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +3

Query: 474 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSF 596
           M++   + KVVVRHLPP LS+S  + QI  RF+  YN VSF
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSF 41


>tr|A9RK13|A9RK13_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_159550 PE=4 SV=1
          Length = 987

 Score = 47.8 bits (112), Expect = 5e-04
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +3

Query: 471 AMRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSF 596
           AM++   RTKV VRHLPP LSE+ F +QIA +++  Y   S+
Sbjct: 25  AMKEQQARTKVAVRHLPPSLSEAVFQDQIAGKYAGAYTWWSY 66


>tr|A7QGI8|A7QGI8_VITVI Chromosome undetermined scaffold_92, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00038335001 PE=4 SV=1
          Length = 347

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +3

Query: 474 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSF 596
           M+   +RTKV+VRHLPP + E+AF+EQI + F   Y +V F
Sbjct: 1   MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKF 41


>tr|A5AQH0|A5AQH0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035617 PE=4 SV=1
          Length = 355

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +3

Query: 474 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSF 596
           M+   +RTKV+VRHLPP + E+AF+EQI + F   Y +V F
Sbjct: 1   MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKF 41


>tr|Q7XQG3|Q7XQG3_ORYSJ OJ000114_01.14 protein OS=Oryza sativa
           subsp. japonica GN=OJ000114_01.14 PE=4 SV=1
          Length = 455

 Score = 44.3 bits (103), Expect = 0.005
 Identities = 20/47 (42%), Positives = 31/47 (65%)
 Frame = +3

Query: 456 AGAAAAMRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSF 596
           A A A ++D  +RTKVV+R LPP +++ A +EQ+ +RF   Y+   F
Sbjct: 2   AAARAHVKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCF 48