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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953139
Clone id TST38A01NGRL0015_P19
Library
Length 606
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_P19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGGAGTTGCAGCATCTTTCCTCCCCAGCGTGAAGGGAAGAAAAAAAGTGTTGACTTCCCT
TTTTTTTTTTTGTAGGGAGAAAGGAGGTAGAGATCAAGTAAGTGGGGCAACAACTGTCAC
CCCTGCCAGTTGTTCCACGTATAGGAGATAGGGATGACGGGATTTGAACCTGCGACATTT
TGTACCCAAAACAAACACGCTACCGAGCTGCGTTACATCCCTTTTGGTTGTACTTGATAC
CATCAACCCCTTGCTTGTTATTCGATCCAATTGATTATAATCTTTTCCCACGAATACTGG
CTACCGTCGAAGTAGGAATGCATTTTTTGGGAAGCTGCTAATCCCTGCCCTCTCTTTATT
TTAATTCCCACTTTTCATTCTCTACACCACTTCTCGACTTAGTATTCTGGAGTCGGGTAC
TGGAAAAAACTTTATTCTTCTTTCAAGTAAATGTGAGAATTTGATTTAGATATAGTTAGA
TTTTAAGTAGTAAAGCTGGTGAGGATAAAGGCAAGTAGGTAGGGGAAATAAAAAATTGAT
AAGAAGGAGGATTCCAATGCAACATGTAAAAAATATATCTTTCCACAAGCCCCTGTTGTA
GCTACA
■■Homology search results ■■ -
sp_hit_id Q8RY17
Definition sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana
Align length 95
Score (bit) 32.0
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953139|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_P19, 5'
         (606 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22 OS...    32   2.5  
sp|P81230|YC4B_METJA Uncharacterized protein MJ1249.1 OS=Methano...    31   5.6  
sp|Q953I4|NU5M_SORFM NADH-ubiquinone oxidoreductase chain 5 OS=S...    30   9.5  
sp|Q9CJR2|Y1932_PASMU Uncharacterized protein PM1932 OS=Pasteure...    30   9.6  

>sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22
           OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1
          Length = 751

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
 Frame = -3

Query: 283 RL*SIGSNNKQGVDGIKYNQKGCNAA-------R*RVCFGYKMSQVQIPS--------SL 149
           RL S+G +N+  +  I+    GC ++         ++C GY   Q +IP+         L
Sbjct: 140 RLVSVGCDNRALITDIESQITGCESSCDGDKSRLDKICGGYTCCQAKIPADRPQVIGVDL 199

Query: 148 SPIRGTTGRGDSCCPTYLISTSFLPTKKKKGSQHF 44
               G T +G +C   +L + ++ P    +  Q +
Sbjct: 200 ESSGGNTTQGGNCKVAFLTNETYSPANVTEPEQFY 234


>sp|P81230|YC4B_METJA Uncharacterized protein MJ1249.1
           OS=Methanocaldococcus jannaschii GN=MJ1249.1 PE=4 SV=1
          Length = 166

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 581 KIYFLHVALESSFLSIFYFPYLLAFILT 498
           KI FL + L S  LS+FY+ +L AF+L+
Sbjct: 10  KISFLLIILVSLILSLFYYNFLFAFLLS 37


>sp|Q953I4|NU5M_SORFM NADH-ubiquinone oxidoreductase chain 5
           OS=Soriculus fumidus GN=MT-ND5 PE=3 SV=1
          Length = 606

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +3

Query: 267 PIDYNLFPRILATVEVGMHFLGSC*SLPSLYFNSHFSFSTPLLDLVFWSRVLEKTLFFFQ 446
           P +Y+ F  +L    + MH L     +PS        FS+ LLDL +   +L K++  FQ
Sbjct: 516 PHNYHKFSNMLGYFPIIMHRL-----IPSTTLMMSQKFSSMLLDLTWMENILPKSISNFQ 570

Query: 447 VNVRI 461
            +  I
Sbjct: 571 ASSSI 575


>sp|Q9CJR2|Y1932_PASMU Uncharacterized protein PM1932 OS=Pasteurella
           multocida GN=PM1932 PE=4 SV=1
          Length = 71

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 148 IGMTGFEPATFCTQNKHATELRYIP 222
           +G  GFEP T  +Q   AT+LRY P
Sbjct: 44  VGEIGFEPTTHWSQTSCATKLRYSP 68
tr_hit_id A4QM24
Definition tr|A4QM24|A4QM24_PINKO ORF66a OS=Pinus koraiensis
Align length 27
Score (bit) 53.5
E-value 9.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953139|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_P19, 5'
         (606 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QM24|A4QM24_PINKO ORF66a OS=Pinus koraiensis PE=4 SV=1            54   9e-06
tr|A7QDC0|A7QDC0_VITVI Chromosome undetermined scaffold_80, whol...    49   3e-04
tr|A3WQ21|A3WQ21_9GAMM Putative uncharacterized protein OS=Idiom...    39   0.31 
tr|A7A485|A7A485_BIFAD Putative uncharacterized protein OS=Bifid...    38   0.52 
tr|A4CP42|A4CP42_9FLAO Putative uncharacterized protein OS=Robig...    35   3.4  
tr|A3IDC8|A3IDC8_9BACI Putative uncharacterized protein OS=Bacil...    34   5.8  
tr|Q0FYC5|Q0FYC5_9RHIZ Putative uncharacterized protein OS=Fulvi...    33   9.8  

>tr|A4QM24|A4QM24_PINKO ORF66a OS=Pinus koraiensis PE=4 SV=1
          Length = 66

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = -1

Query: 225 KRDVTQLGSVFVLGTKCRRFKSRHPYL 145
           +RDV QLGSVFVLGTKCRRFKS HPYL
Sbjct: 3   RRDVAQLGSVFVLGTKCRRFKSCHPYL 29


>tr|A7QDC0|A7QDC0_VITVI Chromosome undetermined scaffold_80, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035781001 PE=4 SV=1
          Length = 55

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = -1

Query: 225 KRDVTQLGSVFVLGTKCRRFKSRHPYLL 142
           +RDV QLGS FVLGTKC  FKS HPYLL
Sbjct: 25  ERDVAQLGSAFVLGTKCHGFKSCHPYLL 52


>tr|A3WQ21|A3WQ21_9GAMM Putative uncharacterized protein
           OS=Idiomarina baltica OS145 GN=OS145_12211 PE=4 SV=1
          Length = 109

 Score = 38.5 bits (88), Expect = 0.31
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +1

Query: 148 IGMTGFEPATFCTQNKHATELRYIPF 225
           +G TGFEPAT  TQ K AT+LRY PF
Sbjct: 2   VGETGFEPATPWTQTKCATKLRYSPF 27


>tr|A7A485|A7A485_BIFAD Putative uncharacterized protein
           OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_00637
           PE=4 SV=1
          Length = 79

 Score = 37.7 bits (86), Expect = 0.52
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 148 IGMTGFEPATFCTQNKHATELRYIPFG 228
           +G+ GFEPA   ++ K AT+LRY PFG
Sbjct: 23  VGLAGFEPAASSSRTKRATKLRYSPFG 49


>tr|A4CP42|A4CP42_9FLAO Putative uncharacterized protein
           OS=Robiginitalea biformata HTCC2501 GN=RB2501_01246 PE=4
           SV=1
          Length = 128

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +1

Query: 148 IGMTGFEPATFCTQNKHATELRYIPFG 228
           +GMTGFEPAT  T   ++T L YIP G
Sbjct: 99  VGMTGFEPATTRTPCVYSTRLNYIPNG 125


>tr|A3IDC8|A3IDC8_9BACI Putative uncharacterized protein OS=Bacillus
           sp. B14905 GN=BB14905_20880 PE=4 SV=1
          Length = 60

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -2

Query: 194 LFWVQNVAGSNPVIPISYTW 135
           L W Q V GSNPVIPI Y W
Sbjct: 5   LVWDQGVVGSNPVIPIIYKW 24


>tr|Q0FYC5|Q0FYC5_9RHIZ Putative uncharacterized protein
           OS=Fulvimarina pelagi HTCC2506 GN=FP2506_02475 PE=4 SV=1
          Length = 351

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 148 IGMTGFEPATFCTQNKHATELRYIP 222
           +G  GFEPAT  +Q + AT LRY P
Sbjct: 2   VGAAGFEPATLWSQTRCATRLRYAP 26