DK953140 [AcEST]

DK953140
Clone id	TST38A01NGRL0015_P20
Library	TST38
Length	599
Definition	Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_P20. 5' end sequence.
Accession	DK953140
Tissue type	prothallia
Developmental stage	gametophyte
Contig ID	CL1212Contig1
Sequence	GGTTACTGGGTTCTTCTTCATTTCACAAGCGTCTGCTTCTCGCCTGGTCCATCTTTGTAG CAACGACAACGCAGATTTCCTGCTGCCTGCAGCTTTCTGACGTTTTACAAACCCTAATTG CAGCAAATACAGAGAGAAAAAGAGCGAGGAGAGCTCTCATGGTGCTTCTCTAACGCTAAC CCAGGGTTGACATCCGGACCTCATAGTTTTCACTGAAGCTGACACAAAAATGGCACATGA GCAGCAATTTGTTGCTAGGGATTTTATGGGGCTTGGCAAGATGGGAGACGTGCAGGAGAG GGGTGAAAGCAAGGATGGTGGCATGCCTGTGAAGCTTCACGAAGGTGATTTGGGTCACCT AAATGGACCACCAGCCTCCATCAACAATGGCATTCTTTACAATAACATGGCTTTTACAGG TTTAAAACATCCTCTTTGGAGCAATGGTTCAAGCTTTCAACACCTTCTTTCTTCGGGGTA TGTGCATGAGGACAAGCTTATTGAGCAGAGTGCAGAGAGTGCACCTGAACGAACATTCAT GCCTCTTCCACATCCTGTGCAGGCATGGTGGCGGGCAGATCCTTTTATCAAACGCTCTC
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q9HGN6
Definition	sp\|Q9HGN6\|DUS1_SCHPO tRNA-dihydrouridine synthase 1 OS=Schizosaccharomyces pombe
Align length	39
Score (bit)	30.0
E-value	9.3
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK953140\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_P20, 5' (599 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q9HGN6\|DUS1_SCHPO tRNA-dihydrouridine synthase 1 OS=Schizosac... 30 9.3 >sp\|Q9HGN6\|DUS1_SCHPO tRNA-dihydrouridine synthase 1 OS=Schizosaccharomyces pombe GN=dus1 PE=2 SV=1 Length = 399 Score = 30.0 bits (66), Expect = 9.3 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +2 Query: 476 GYVHEDKLIEQSAESAPERTFMPLPHPVQAWWRADPFIK 592 G ++EDK +++S + + + +PV WWR P+I+ Sbjct: 337 GEINEDKDVKESVKDS-------MGYPVIPWWRVQPYIR 368
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q51691
Definition	tr\|Q51691\|Q51691_PARDE CycH protein OS=Paracoccus denitrificans
Align length	37
Score (bit)	33.5
E-value	9.6
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK953140\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_P20, 5' (599 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q51691\|Q51691_PARDE CycH protein OS=Paracoccus denitrificans ... 33 9.6 >tr\|Q51691\|Q51691_PARDE CycH protein OS=Paracoccus denitrificans GN=cycH PE=4 SV=1 Length = 413 Score = 33.5 bits (75), Expect = 9.6 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +1 Query: 40 SPGPSLQRQRRFPAACSFLTFYKPLQQIQREKERG 150 SP P L ++ RR PAA L Y+ L++++R+ ERG Sbjct: 17 SPAPLLRRQARREPAAAYDLAIYRDQLREVERDLERG 53