DK953164 |
Clone id |
TST39A01NGRL0017_A20 |
Library |
TST39 |
Length |
774 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_A20. 5' end sequence. |
Accession |
DK953164 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL106Contig1 |
Sequence |
GAAGCTTCAGAAGGGACCAGCCCAACGTGTACGAGCTGGACTTGGAGGAGCAGGTGAGCC AGATTGATATGGATCCCAACAAGATGCTACAGCCTGGAGACCCCAATTCTATGCAGGCCA TTATTAAGGATGTCATGCCTGTAGGTTACTTCGTCTCTCTGCCCACAGGCAGAGATGGGT ATCTTCCAGCAGATGACTTGGGCTTTACAGGTGGGCTTGCTATTCTGCGCAAGCTTTTCA AGGAGGGTCAAGAGATTACTGTGCGCATTGTTTGTCGCGGTGGGGCAGGAAGGGAGATTG TTTCTGTGAAAAAGCCTGAGTTTGCCCCTCCCAGTGAGCAGAAGACCATTGAAAGCTTGC GGCTGCATTTCGAGAATGAAAAGAAGAACAGGATGAATCCTCGGAACAGGCGGCGCCAGC AGTACAACAATTACTGACAAGATCTGTGATTTGCCTGAGGCTTGCTACCTATTCAAGCTG GACTCCTGCTGCTTTTATCGATAAGTTATGTCCTTTGGTGTTCGGTCACTTGGCTGTTAA GTAGGCTAGCATGGTCAGATATTAAGTAAGTGGAGTCCTTGCTCAGGTGTTGGGTGTTAC TAAATCGTGTCCTGTGTTGACTATGCCGGCAGATGATTTTTGAAGCAGCTCTATGGTTTT GTGCTACTATGGGGAATCCTGTGTACAAGTATGACATTTTGATTAACAACTTGCATTGGG TTTCCCTTCCCATGTTTCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6K8Z4 |
Definition |
sp|Q6K8Z4|FH7_ORYSJ Formin-like protein 7 OS=Oryza sativa subsp. japonica |
Align length |
54 |
Score (bit) |
33.5 |
E-value |
1.3 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A6E805 |
Definition |
tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase OS=Pedobacter sp. BAL39 |
Align length |
79 |
Score (bit) |
40.0 |
E-value |
0.16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953164|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_A20, 5' (742 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas... 40 0.16 tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom... 40 0.16 tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th... 39 0.27 tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte... 39 0.47 tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter... 37 1.8 tr|A4SGB6|A4SGB6_PROVI SSU ribosomal protein S1P OS=Prosthecochl... 36 2.3 tr|A7HME7|A7HME7_FERNB Hydroxymethylbutenyl pyrophosphate reduct... 35 4.0 tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein OS=Thermoto... 35 4.0 tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein OS=Hydrogen... 35 5.2 tr|A6LNG6|A6LNG6_THEM4 Hydroxymethylbutenyl pyrophosphate reduct... 35 5.2 tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reduct... 35 5.2 tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo... 35 6.8 tr|B1YGQ3|B1YGQ3_EXIS2 RNA binding S1 domain protein OS=Exiguoba... 35 6.8 tr|Q3AFC3|Q3AFC3_CARHZ Ribonuclease R OS=Carboxydothermus hydrog... 34 8.8 tr|B3DUV3|B3DUV3_METI4 Ribosomal protein S1 OS=Methylacidiphilum... 34 8.8 tr|A9B5U0|A9B5U0_HERA2 RNA binding S1 domain protein OS=Herpetos... 34 8.8 tr|A0PYT7|A0PYT7_CLONN Leucine Rich Repeat domain protein OS=Clo... 34 8.8 tr|Q08WR4|Q08WR4_STIAU RNA binding S1 OS=Stigmatella aurantiaca ... 34 8.8
>tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase OS=Pedobacter sp. BAL39 GN=PBAL39_00932 PE=4 SV=1 Length = 715
Score = 40.0 bits (92), Expect = 0.16 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%) Frame = +3
Query: 123 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREIV 302 +K +MP G FV + G+DG L ++ +T L + +FKEG ++ V+++ G+ + Sbjct: 636 VKSIMPFGAFVEIMPGKDGLLHISEIDWT-RLETMDGVFKEGDKLQVKLLDIDKQGKMKL 694
Query: 303 SVK-------KPEFAPPSE 338 S K KPE AP ++ Sbjct: 695 SRKVLLPRPPKPEGAPANK 713
>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001 PE=4 SV=1 Length = 553
Score = 40.0 bits (92), Expect = 0.16 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Frame = +3
Query: 111 MQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTG-GLAILRKLFKEGQEITVRIVCRGGA 287 ++ +K++ G F+SLP G +G+LP + G G + + GQE++VR++ R Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324
Query: 288 GREIVSVKKPEFAPPSEQKTIESL 359 G+ +++KK E A + K E + Sbjct: 325 GQVTLTMKKEEDAEKLDLKLGEGV 348
>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4 SV=1 Length = 616
Score = 39.3 bits (90), Expect = 0.27 Identities = 22/82 (26%), Positives = 41/82 (50%) Frame = +3
Query: 123 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREIV 302 I ++ G V LP+G DG++PA L GG+ + FK G E+ ++++ + I+ Sbjct: 486 IAQIIEKGVIVELPSGVDGFVPASHL-LQGGVRDINASFKVGDELPLKVIEFDRENKRII 544
Query: 303 SVKKPEFAPPSEQKTIESLRLH 368 F S+++ E ++ H Sbjct: 545 LSALEYFKGKSKEEIEEYMKQH 566
>tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00512 PE=4 SV=1 Length = 150
Score = 38.5 bits (88), Expect = 0.47 Identities = 21/63 (33%), Positives = 36/63 (57%) Frame = +3
Query: 144 GYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREIVSVKKPEF 323 G FVSLP G+ G + ++ ++ + ++ KEGQE+ V+++ GR +S+KK Sbjct: 20 GAFVSLPEGKSGLVHISEIAYSY-VNDVKDYLKEGQEVKVKVIGIDENGRINLSIKKAMD 78
Query: 324 APP 332 PP Sbjct: 79 PPP 81
>tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=CHAB381_0481 PE=4 SV=1 Length = 557
Score = 36.6 bits (83), Expect = 1.8 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +3
Query: 87 LQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVR 266 L+ GD ++Q + ++ P G FV L +G+L ++ + + + EGQEI V Sbjct: 284 LEVGD--TIQVTVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDFISEGQEINVE 341
Query: 267 IVCRGGAGREI-VSVK 311 +V G R + VS+K Sbjct: 342 VVEINGDDRRLRVSLK 357
>tr|A4SGB6|A4SGB6_PROVI SSU ribosomal protein S1P OS=Prosthecochloris vibrioformis (strain DSM 265) GN=Cvib_1514 PE=4 SV=1 Length = 602
Score = 36.2 bits (82), Expect = 2.3 Identities = 26/90 (28%), Positives = 42/90 (46%) Frame = +3
Query: 117 AIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGRE 296 A I ++ G V LP DG++PA L GG+ + FK G + +R++ + Sbjct: 492 AEISQIIEKGVIVILPGDVDGFVPATHL-LQGGVKDIHSSFKIGDALPLRVIEFDKENKR 550
Query: 297 IVSVKKPEFAPPSEQKTIESLRLHFENEKK 386 I+ + E+ ++ IES NEKK Sbjct: 551 II-LSALEYFKDKSKEEIESYLQAHPNEKK 579
>tr|A7HME7|A7HME7_FERNB Hydroxymethylbutenyl pyrophosphate reductase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1233 PE=4 SV=1 Length = 854
Score = 35.4 bits (80), Expect = 4.0 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 3/107 (2%) Frame = +3
Query: 6 FRRDQPNVYELDLEEQVSQIDMDPNKMLQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYL 185 + D N+ + LEE Q+ + M Q G ++ I+ ++ P G + L G + Sbjct: 291 YMEDLNNLKQEVLEESFEQLLKEHENMNQVGRGKIVEGIVTEITPTGLTIDLGGKVTGVV 350
Query: 186 PADDLGFTGGLAILRKL--FKEGQEITVRI-VCRGGAGREIVSVKKP 317 P ++L ++L +K G++I VR+ G I+S KKP Sbjct: 351 PLEEL--------FKELNEYKVGEQIKVRVEKINEEDGTAILSAKKP 389
>tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein OS=Thermotogales bacterium TBF 19.5.1 GN=KoleDRAFT_0875 PE=4 SV=1 Length = 572
Score = 35.4 bits (80), Expect = 4.0 Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Frame = +3
Query: 54 VSQIDMDPNKMLQPGDP--NSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAIL 227 + Q+ DP ++ P + ++ ++K ++P G+FV + G +G + ++ + L Sbjct: 263 LKQLQEDPWNTVEEKYPVGSVVEGVVKSIVPFGFFVMIEPGVEGLVHISEVFWGNVRRDL 322
Query: 228 RKLFKEGQEITVRI 269 ++L +EG + V+I Sbjct: 323 KELIREGDRVKVKI 336
>tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=HY04AAS1_0061 PE=4 SV=1 Length = 525
Score = 35.0 bits (79), Expect = 5.2 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = +3
Query: 90 QPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRI 269 +PG ++ +K+V P G F+ LP G DG LP ++ L + GQ ITV++ Sbjct: 423 KPGQ--QVELAVKEVRPFGTFLGLPEGIDGLLPISEIPKNTNL-------EPGQNITVKV 473
Query: 270 V 272 + Sbjct: 474 L 474
>tr|A6LNG6|A6LNG6_THEM4 Hydroxymethylbutenyl pyrophosphate reductase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=Tmel_1623 PE=4 SV=1 Length = 810
Score = 35.0 bits (79), Expect = 5.2 Identities = 16/42 (38%), Positives = 26/42 (61%) Frame = +3
Query: 123 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEG 248 +K +MP G+FV+L G DG++ DD+ F G ++ + EG Sbjct: 545 VKKIMPYGFFVNLEPGIDGFVHIDDV-FWGKRGNIKDIISEG 585
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