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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953209
Clone id TST39A01NGRL0017_C18
Library
Length 634
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_C18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGCAAGGTTCGTTGGCTATGGCTTGAGAAGCGATCGCCCCTCTGCATGCATCTAGGTGCC
CTCCTCTCTCTGTGGATTCCCTGCTTCGCATCCCTTTTGCCTATCGAAGAAGGAATTCTT
ACTTGCAGTTGCTAAGTACCGCCCATTCCTGTGCTTTGTACTTCTGGGTTCTTCCCCGGA
CCCTTCATCCTTTGTGTATTTAGCTGCCCTTTGGCACTCGGAGTCCATTTACATGTTCAT
ATTGGGTGGAGAGGGTCAGCTTGGCCCCCTCGCGGCCGCCACCTTGGCTGGAGCGGTGTC
ACTTCGGGCAATGTGCTGGAGGAAGCTCTACTGCCTACCCTTTGTTGTCTTCAAAACTCT
GAAAATGCATCACCTCACCAGGTAGAGACTCAGCGTGCGGTGCAGAAACAGATTGGAAAT
CCCGCTCAGAGAAGCAATTAGGTTGATAAAGTCTTAAGTCTGGAAGATCTCTCATGTCAA
GCGGAGTAACACACTTCAGCTCAGAAGATCTTGAGCATCTCTCCAATAGCTTTCAGACGA
TGGGCCGTGAGTACAAGCTTTCCAATGGATCAAATAATAATGGATTTATGCACAATTCAG
GACATGTGTGGGAAGATAACAATGATGACCTCAA
■■Homology search results ■■ -
sp_hit_id P0AB38
Definition sp|P0AB38|YCFM_ECOLI Uncharacterized protein ycfM OS=Escherichia coli (strain K12)
Align length 95
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953209|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_C18, 5'
         (634 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0AB38|YCFM_ECOLI Uncharacterized protein ycfM OS=Escherichia...    33   1.6  
sp|P0AB39|YCFM_ECO57 Uncharacterized protein ycfM OS=Escherichia...    33   1.6  
sp|Q3U276|LYRM8_MOUSE LYR motif-containing protein ENSP000003681...    31   4.6  
sp|A6NFY7|LYRM8_HUMAN LYR motif-containing protein ENSP000003681...    31   4.6  
sp|Q9Y608|LRRF2_HUMAN Leucine-rich repeat flightless-interacting...    30   7.9  
sp|Q54LD5|ADCD_DICDI Arrestin domain-containing protein D OS=Dic...    30   7.9  

>sp|P0AB38|YCFM_ECOLI Uncharacterized protein ycfM OS=Escherichia
           coli (strain K12) GN=ycfM PE=4 SV=1
          Length = 213

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 26/95 (27%), Positives = 40/95 (42%)
 Frame = +1

Query: 136 VPPIPVLCTSGFFPGPFILCVFSCPLALGVHLHVHIGWRGSAWPPRGRHLGWSGVTSGNV 315
           VP +P + T    PGP      + P A  +    H  W G+  P   + LG  GVT+G+V
Sbjct: 46  VPTVPSVPTIPQQPGPIEHEDQTAPPAPHIR---HYDWNGAMQPMVSKMLGADGVTAGSV 102

Query: 316 LEEALLPTLCCLQNSENASPHQVETQRAVQKQIGN 420
           L       +  + N  N S +  E    ++  + N
Sbjct: 103 L------LVDSVNNRTNGSLNAAEATETLRNALAN 131


>sp|P0AB39|YCFM_ECO57 Uncharacterized protein ycfM OS=Escherichia
           coli O157:H7 GN=ycfM PE=4 SV=1
          Length = 213

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 26/95 (27%), Positives = 40/95 (42%)
 Frame = +1

Query: 136 VPPIPVLCTSGFFPGPFILCVFSCPLALGVHLHVHIGWRGSAWPPRGRHLGWSGVTSGNV 315
           VP +P + T    PGP      + P A  +    H  W G+  P   + LG  GVT+G+V
Sbjct: 46  VPTVPSVPTIPQQPGPIEHEDQTAPPAPHIR---HYDWNGAMQPMVSKMLGADGVTAGSV 102

Query: 316 LEEALLPTLCCLQNSENASPHQVETQRAVQKQIGN 420
           L       +  + N  N S +  E    ++  + N
Sbjct: 103 L------LVDSVNNRTNGSLNAAEATETLRNALAN 131


>sp|Q3U276|LYRM8_MOUSE LYR motif-containing protein ENSP00000368165
           homolog OS=Mus musculus PE=2 SV=1
          Length = 118

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 81  LLRIPFAYRRRNSYLQLLSTAHSCALYFWVLPR 179
           +LRI + YRR    LQLL + H+ A+  +V PR
Sbjct: 47  VLRIEYLYRRGRRQLQLLRSGHATAMGTFVRPR 79


>sp|A6NFY7|LYRM8_HUMAN LYR motif-containing protein ENSP00000368165
           OS=Homo sapiens PE=3 SV=1
          Length = 115

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 81  LLRIPFAYRRRNSYLQLLSTAHSCALYFWVLPR 179
           +LRI + YRR    LQLL + H+ A+  +V PR
Sbjct: 47  VLRIEYLYRRGRRQLQLLRSGHATAMGAFVRPR 79


>sp|Q9Y608|LRRF2_HUMAN Leucine-rich repeat flightless-interacting
           protein 2 OS=Homo sapiens GN=LRRFIP2 PE=1 SV=1
          Length = 721

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 207 PFGTRSPFTCSYWVERVSLAPSRP 278
           P+G R+P  CSY+  R+S A S P
Sbjct: 214 PYGPRTPSECSYYSSRISSARSSP 237


>sp|Q54LD5|ADCD_DICDI Arrestin domain-containing protein D
           OS=Dictyostelium discoideum GN=adcD PE=3 SV=1
          Length = 785

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 489 THFSSEDLEHLSN--SFQTMGREYKLSNGSNNNGFMHNSGHVWEDNNDD 629
           THF+S  L H  N  SF T       +N +NNN   +N+ +   +NN++
Sbjct: 304 THFTSHKLAHYLNWLSFGTNTNSNNSNNNNNNNNNNNNNNNNNNNNNNN 352
tr_hit_id A9DER0
Definition tr|A9DER0|A9DER0_9RHIZ Acyl-CoA dehydrogenase family protein OS=Hoeflea phototrophica DFL-43
Align length 79
Score (bit) 38.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953209|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_C18, 5'
         (634 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9DER0|A9DER0_9RHIZ Acyl-CoA dehydrogenase family protein OS=...    39   0.26 
tr|Q21V94|Q21V94_RHOFD Acyl-CoA dehydrogenase-like OS=Rhodoferax...    39   0.34 
tr|B0SZK1|B0SZK1_CAUSK Acyl-CoA dehydrogenase domain protein OS=...    38   0.45 
tr|Q1DJS6|Q1DJS6_COCIM Putative uncharacterized protein OS=Cocci...    37   1.00 
tr|B1TF72|B1TF72_9BURK Acyl-CoA dehydrogenase domain protein OS=...    36   2.2  
tr|Q654H4|Q654H4_ORYSJ Putative uncharacterized protein P0412C04...    36   2.2  
tr|Q8IFQ8|Q8IFQ8_PLAF7 Putative uncharacterized protein PFD0985w...    35   2.9  
tr|Q8FIN4|Q8FIN4_ECOL6 Putative uncharacterized protein ycfM OS=...    35   2.9  
tr|Q63XX0|Q63XX0_BURPS Putative uncharacterized protein OS=Burkh...    35   2.9  
tr|Q3JWK4|Q3JWK4_BURP1 Acyl-CoA dehydrogenase, C-terminal domain...    35   2.9  
tr|Q1LQ45|Q1LQ45_RALME Acyl-CoA dehydrogenase-like protein OS=Ra...    35   2.9  
tr|A1TV65|A1TV65_ACIAC Acyl-CoA dehydrogenase domain protein OS=...    35   2.9  
tr|B7CJT0|B7CJT0_BURPS Acyl-CoA dehydrogenase domain protein OS=...    35   2.9  
tr|B1HGC1|B1HGC1_BURPS Acyl-CoA dehydrogenase domain protein OS=...    35   2.9  
tr|A8KJE7|A8KJE7_BURPS Acyl-CoA dehydrogenase domain protein OS=...    35   2.9  
tr|A4LJT2|A4LJT2_BURPS Acyl-CoA dehydrogenase domain protein OS=...    35   2.9  
tr|A4XEQ6|A4XEQ6_NOVAD Acyl-CoA dehydrogenase domain protein OS=...    35   3.8  
tr|A9GGF3|A9GGF3_9RHOB Acyl-CoA dehydrogenase family protein OS=...    35   3.8  
tr|Q1BT90|Q1BT90_BURCA Acyl-CoA dehydrogenase-like OS=Burkholder...    35   5.0  
tr|B4E9R7|B4E9R7_BURCJ Putative acyl-CoA dehydrogenase OS=Burkho...    35   5.0  
tr|B1JZ82|B1JZ82_BURCC Acyl-CoA dehydrogenase domain protein OS=...    35   5.0  
tr|A0KAV1|A0KAV1_BURCH Acyl-CoA dehydrogenase domain protein OS=...    35   5.0  
tr|B5WCA3|B5WCA3_9BURK Acyl-CoA dehydrogenase domain protein OS=...    35   5.0  
tr|A9ESA6|A9ESA6_9RHOB Acyl-CoA dehydrogenase family protein OS=...    35   5.0  
tr|A2VV44|A2VV44_9BURK Acyl-CoA dehydrogenase OS=Burkholderia ce...    35   5.0  
tr|B7Q8K9|B7Q8K9_IXOSC Rapsynoid, putative OS=Ixodes scapularis ...    35   5.0  
tr|Q3JB65|Q3JB65_NITOC Putative uncharacterized protein OS=Nitro...    34   6.5  
tr|Q39CK2|Q39CK2_BURS3 Acyl-CoA dehydrogenase OS=Burkholderia sp...    34   6.5  
tr|B6C1V6|B6C1V6_9GAMM Putative uncharacterized protein OS=Nitro...    34   6.5  
tr|B2H1S5|B2H1S5_BURPS Acyl-CoA dehydrogenase domain protein OS=...    34   6.5  

>tr|A9DER0|A9DER0_9RHIZ Acyl-CoA dehydrogenase family protein
           OS=Hoeflea phototrophica DFL-43 GN=HPDFL43_10611 PE=4
           SV=1
          Length = 398

 Score = 38.9 bits (89), Expect = 0.26
 Identities = 24/79 (30%), Positives = 36/79 (45%)
 Frame = +1

Query: 244 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 423
           GW G  WP +    GW  V S N+ EE +        N+    P  +     V    G+ 
Sbjct: 54  GWLGVTWPEKYGGTGWDAV-SRNIFEEEITAA-----NAPRIIPFGLNMLGPVLMAFGSE 107

Query: 424 AQRSN*VDKVLSLEDLSCQ 480
           AQ+++ + ++LS ED  CQ
Sbjct: 108 AQKAHYLPRILSGEDWWCQ 126


>tr|Q21V94|Q21V94_RHOFD Acyl-CoA dehydrogenase-like OS=Rhodoferax
           ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
           GN=Rfer_2593 PE=4 SV=1
          Length = 402

 Score = 38.5 bits (88), Expect = 0.34
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +1

Query: 244 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 423
           GW  + WP      GWS V      E+ +    CCL ++    P  V     V  + GN 
Sbjct: 54  GWLANHWPVAYGGPGWSAV------EKFIFEHECCLASAPRIVPFGVNMLGPVLIKFGNE 107

Query: 424 AQRSN*VDKVLSLEDLSCQAE*HTSA-QKILSISPIAFR 537
            Q+ + + ++L   D  CQ    T A   + ++S  A R
Sbjct: 108 TQKRHWLPRILDGSDWWCQGYSETGAGSDLAAVSTTALR 146


>tr|B0SZK1|B0SZK1_CAUSK Acyl-CoA dehydrogenase domain protein
           OS=Caulobacter sp. (strain K31) GN=Caul_1361 PE=4 SV=1
          Length = 400

 Score = 38.1 bits (87), Expect = 0.45
 Identities = 27/98 (27%), Positives = 41/98 (41%)
 Frame = +1

Query: 187 ILCVFSCPLALGVHLHVHIGWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSEN 366
           + C  +  LA    LH+  GW   +WP      GWS +     L E      C    + N
Sbjct: 38  VFCDKAHSLAWQRILHIR-GWAAPSWPVEYGGPGWSEIQRQVFLAE------CARAGAPN 90

Query: 367 ASPHQVETQRAVQKQIGNPAQRSN*VDKVLSLEDLSCQ 480
            +P  +     V  + G P Q++  + ++LS ED  CQ
Sbjct: 91  LAPMGLRMVAPVIMRFGAPEQKARYLPRILSGEDYWCQ 128


>tr|Q1DJS6|Q1DJS6_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_09437 PE=4 SV=1
          Length = 554

 Score = 37.0 bits (84), Expect = 1.00
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
 Frame = +1

Query: 55  GALLSLWIPCFASLLPIEEGILTCSC*VPPIPVLCTSGFFPGPFILCVFSCPLALGVHLH 234
           G L+ LW P       +  GI   +           S  F GP      + P+  G  +H
Sbjct: 224 GVLVDLWDP-------VSRGIAGATF---------ASSTFIGPI-----AGPIVGGFIVH 262

Query: 235 VHIGWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRA-VQKQ 411
            H+GWR +AW                ++ +A++  +C L   E   P  ++ + A ++K+
Sbjct: 263 SHLGWRWTAWI--------------TLILKAVIGCICVLTIPETFGPLLLQRRAARLRKE 308

Query: 412 IGNPAQRSN*VDKVLSLEDL 471
            GNPA R+   D   +++D+
Sbjct: 309 TGNPALRTALDDARPTMQDI 328


>tr|B1TF72|B1TF72_9BURK Acyl-CoA dehydrogenase domain protein
           OS=Burkholderia ambifaria MEX-5 GN=BamMEX5DRAFT_6438
           PE=4 SV=1
          Length = 398

 Score = 35.8 bits (81), Expect = 2.2
 Identities = 24/79 (30%), Positives = 32/79 (40%)
 Frame = +1

Query: 244 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 423
           GW  S WP      GWS      V ++ L    C L  +    P  V     V  + GN 
Sbjct: 54  GWLASHWPREYGGPGWS------VAQKFLFDNECALAGAPRIVPFGVNMLGPVLIKYGNE 107

Query: 424 AQRSN*VDKVLSLEDLSCQ 480
           AQR + + ++L   D  CQ
Sbjct: 108 AQRRHWLPRILDGTDWWCQ 126


>tr|Q654H4|Q654H4_ORYSJ Putative uncharacterized protein P0412C04.5
           OS=Oryza sativa subsp. japonica GN=P0412C04.5 PE=4 SV=1
          Length = 459

 Score = 35.8 bits (81), Expect = 2.2
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +2

Query: 26  RSDRPSACI*VPSSLCGFPASHPFCLSKKEFLLAVAK 136
           R+D+PSAC  +P+ +  F +SHPF +   +F+  + K
Sbjct: 155 RADKPSACTSMPAKIVDFRSSHPFPIQSIQFIQFIQK 191


>tr|Q8IFQ8|Q8IFQ8_PLAF7 Putative uncharacterized protein PFD0985w
           (Fragment) OS=Plasmodium falciparum (isolate 3D7)
           GN=PFD0985w PE=4 SV=1
          Length = 1324

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +3

Query: 498 SSEDLEHLSNSFQTMGREYKLSNGSNNNGFMHNSGHVWEDNNDD 629
           + ED+E+  N+F     +  L+N +NN+G  +N+    +DNNDD
Sbjct: 217 NEEDIENFRNTFNKEYLKSVLTNDNNNDGINNNNDDNNDDNNDD 260


>tr|Q8FIN4|Q8FIN4_ECOL6 Putative uncharacterized protein ycfM
           OS=Escherichia coli O6 GN=ycfM PE=4 SV=1
          Length = 214

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 27/95 (28%), Positives = 41/95 (43%)
 Frame = +1

Query: 136 VPPIPVLCTSGFFPGPFILCVFSCPLALGVHLHVHIGWRGSAWPPRGRHLGWSGVTSGNV 315
           VP +P + T    PGP      + PLA  +    H  W G+  P   + LG  GVT+G+V
Sbjct: 47  VPTVPSVPTIPQQPGPIEHEDQTAPLAPHIR---HYDWNGAMQPMVSKMLGADGVTAGSV 103

Query: 316 LEEALLPTLCCLQNSENASPHQVETQRAVQKQIGN 420
           L       +  + N  N S +  E    ++  + N
Sbjct: 104 L------LVDSVNNRTNGSLNAAEATETLRNALAN 132


>tr|Q63XX0|Q63XX0_BURPS Putative uncharacterized protein
           OS=Burkholderia pseudomallei GN=BPSL0420 PE=4 SV=1
          Length = 402

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = +1

Query: 244 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 423
           GW  S WP      GWS      V ++ L    C +  +    P  V     V  + G+P
Sbjct: 54  GWLASHWPREWGGPGWS------VAQKFLFDNECAIAGAPRIVPFGVNMLGPVLIKYGSP 107

Query: 424 AQRSN*VDKVLSLEDLSCQ 480
           AQ+ + + ++L   D  CQ
Sbjct: 108 AQKRHWLPRILDGTDWWCQ 126


>tr|Q3JWK4|Q3JWK4_BURP1 Acyl-CoA dehydrogenase, C-terminal domain
           protein OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_0635 PE=4 SV=1
          Length = 402

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = +1

Query: 244 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 423
           GW  S WP      GWS      V ++ L    C +  +    P  V     V  + G+P
Sbjct: 54  GWLASHWPREWGGPGWS------VAQKFLFDNECAIAGAPRIVPFGVNMLGPVLIKYGSP 107

Query: 424 AQRSN*VDKVLSLEDLSCQ 480
           AQ+ + + ++L   D  CQ
Sbjct: 108 AQKRHWLPRILDGTDWWCQ 126