DK953216 |
Clone id |
TST39A01NGRL0017_D01 |
Library |
TST39 |
Length |
567 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_D01. 5' end sequence. |
Accession |
DK953216 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL374Contig1 |
Sequence |
GCTTCTCGTCTTCCTCTTGCAGGTTCTGTGCAGCAGCAATGGCGGCCCGGCCTCTCGTCA CCGTCCAATCTGCAGATGGAGATGCCATGACAGAAAGCACCACGCTTCCTGATGTGCTCA AAGCCCCCATCCGCCCTGACATCGTCAACTTCGTGCATGCCAACATGGCGAAAAACAAGC GCCAGCCCTATGCTGTGAGCAAGAAGGCCGGTCATCAGACCTCCGCAGAGTCGTGGGGTA CTGGGCGAGCTGTCTCCCGTATTCCACGTGTTCCTGGTGGTGGAACTCACAGAGCAGGCC AAGGAGCGTTCGGTAACATGTGTCGAGGTGGGCGTATGTTCGCTCCTACCAAGATCTGGC GGAAGTGGCACCGTAAGATCAACCTCAATCAGAAGAGGTATGCAGTTGTATCAGCCTTGG CTGCATCTGCCATACCTTCTCTCGTTCTTGCACGCGGTCACCGAATTGAGCAGGTCCCTG AAGTGCCGCTTGTTCTAGACAACTCCGTCGAAAGCCTCGAAAAAGACTTCTTCTGCTGTT AAGGTGCTTAAGAAGATTGGAGCTTAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9XF97 |
Definition |
sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 OS=Prunus armeniaca |
Align length |
161 |
Score (bit) |
272.0 |
E-value |
7.0e-73 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LK49 |
Definition |
tr|B8LK49|B8LK49_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
161 |
Score (bit) |
268.0 |
E-value |
1.0e-70 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953216|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_D01, 5' (567 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LK49|B8LK49_PICSI Putative uncharacterized protein OS=Picea... 268 1e-70 tr|A9RHY0|A9RHY0_PHYPA Predicted protein OS=Physcomitrella paten... 267 3e-70 tr|A9NXI4|A9NXI4_PICSI Putative uncharacterized protein OS=Picea... 267 3e-70 tr|A7P0A0|A7P0A0_VITVI Chromosome chr6 scaffold_3, whole genome ... 267 3e-70 tr|A9RI50|A9RI50_PHYPA Predicted protein OS=Physcomitrella paten... 265 1e-69 tr|A7PSS7|A7PSS7_VITVI Chromosome chr8 scaffold_29, whole genome... 265 1e-69 tr|A9RN38|A9RN38_PHYPA Predicted protein OS=Physcomitrella paten... 265 1e-69 tr|A9PJ22|A9PJ22_POPJC Putative uncharacterized protein OS=Popul... 265 2e-69 tr|Q2PEV4|Q2PEV4_TRIPR Putative 60S ribosomal protein L1 OS=Trif... 263 5e-69 tr|A9S181|A9S181_PHYPA Predicted protein OS=Physcomitrella paten... 263 5e-69 tr|Q8GYH3|Q8GYH3_ARATH Putative 60S ribosomal protein OS=Arabido... 262 8e-69 tr|A9PG15|A9PG15_POPTR Putative uncharacterized protein OS=Popul... 261 1e-68 tr|Q2PER2|Q2PER2_TRIPR Putative 60S ribosomal protein L1 OS=Trif... 261 2e-68 tr|Q2V3X4|Q2V3X4_ARATH Uncharacterized protein At3g09630.2 OS=Ar... 261 2e-68 tr|B7FHR0|B7FHR0_MEDTR Putative uncharacterized protein OS=Medic... 259 5e-68 tr|Q8LA93|Q8LA93_ARATH 60S ribosomal protein L4-B (L1) OS=Arabid... 256 8e-67 tr|Q7ZW95|Q7ZW95_DANRE Ribosomal protein L4 OS=Danio rerio GN=rp... 254 3e-66 tr|A8J0I0|A8J0I0_CHLRE Ribosomal protein L4 OS=Chlamydomonas rei... 252 9e-66 tr|B4F8D2|B4F8D2_MAIZE Putative uncharacterized protein OS=Zea m... 252 1e-65 tr|B6T3L6|B6T3L6_MAIZE 60S ribosomal protein L4 OS=Zea mays PE=2... 251 2e-65 tr|B4F9G0|B4F9G0_MAIZE Putative uncharacterized protein OS=Zea m... 251 2e-65 tr|Q7ZYR6|Q7ZYR6_XENLA Rpl4-b-prov protein (Fragment) OS=Xenopus... 251 3e-65 tr|Q7SY96|Q7SY96_XENLA Rpl4-b protein OS=Xenopus laevis GN=rpl4-... 251 3e-65 tr|Q5ZII1|Q5ZII1_CHICK Putative uncharacterized protein OS=Gallu... 251 3e-65 tr|Q7ZY88|Q7ZY88_XENLA Rpl-4 protein OS=Xenopus laevis GN=rpl4 P... 250 4e-65 tr|Q28G60|Q28G60_XENTR Ribosomal protein L4 (Putative uncharacte... 249 6e-65 tr|Q6P3V9|Q6P3V9_RAT Ribosomal protein L4 OS=Rattus norvegicus G... 249 7e-65 tr|Q53G74|Q53G74_HUMAN Ribosomal protein L4 variant (Fragment) O... 249 1e-64 tr|Q38HV9|Q38HV9_SOLTU Putative uncharacterized protein OS=Solan... 248 1e-64 tr|Q564E8|Q564E8_MOUSE Putative uncharacterized protein OS=Mus m... 248 2e-64
>tr|B8LK49|B8LK49_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 406
Score = 268 bits (686), Expect = 1e-70 Identities = 132/161 (81%), Positives = 145/161 (90%), Gaps = 3/161 (1%) Frame = +3
Query: 51 PLVTVQSADGDAM---TESTTLPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGHQT 221 PLV+VQ+ + + +++ LPDVLKA IRPDIV FVHANMAKNKRQPYAVSKKAGHQT Sbjct: 9 PLVSVQNVESEGAEGGSDAVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQT 68
Query: 222 SAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRY 401 SAESWGTGRAVSRIPRV GGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKR+ Sbjct: 69 SAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRH 128
Query: 402 AVVSALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 AVVSALAASAIP+LV+ARGHRIE VPE+PLVL + VE +EK Sbjct: 129 AVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEK 169
>tr|A9RHY0|A9RHY0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_66462 PE=4 SV=1 Length = 404
Score = 267 bits (683), Expect = 3e-70 Identities = 129/158 (81%), Positives = 138/158 (87%) Frame = +3
Query: 51 PLVTVQSADGDAMTESTTLPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGHQTSAE 230 PLVTVQS DG TLP V APIRPD+V VH+ +AKNKRQPYAVS KAGHQTSAE Sbjct: 9 PLVTVQSVDGSEKGAQATLPAVFLAPIRPDVVGAVHSALAKNKRQPYAVSVKAGHQTSAE 68
Query: 231 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRYAVV 410 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTK+WR+WHRKINLNQKRYA+ Sbjct: 69 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKINLNQKRYAIA 128
Query: 411 SALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 SALAASAIPSLVLARGH+IEQVPEVPLVL + E +EK Sbjct: 129 SALAASAIPSLVLARGHKIEQVPEVPLVLADGAEGIEK 166
>tr|A9NXI4|A9NXI4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 406
Score = 267 bits (683), Expect = 3e-70 Identities = 130/157 (82%), Positives = 143/157 (91%) Frame = +3
Query: 54 LVTVQSADGDAMTESTTLPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGHQTSAES 233 ++ V+S +A ++ LPDVLKA IRPDIV+FVHANMAKNKRQPYAVSKKAGHQTSAES Sbjct: 13 VLNVESEGAEAGNDAIPLPDVLKACIRPDIVSFVHANMAKNKRQPYAVSKKAGHQTSAES 72
Query: 234 WGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRYAVVS 413 WGTGRAVSRIPRV GGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKR+AVVS Sbjct: 73 WGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVS 132
Query: 414 ALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 ALAASAIP+LV+ARGHRIE VPE+PLVL + VE +EK Sbjct: 133 ALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEK 169
>tr|A7P0A0|A7P0A0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024826001 PE=4 SV=1 Length = 405
Score = 267 bits (683), Expect = 3e-70 Identities = 128/161 (79%), Positives = 145/161 (90%), Gaps = 3/161 (1%) Frame = +3
Query: 51 PLVTVQSADGDAMTE---STTLPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGHQT 221 PLVTVQ D T+ + LPDV+KA IRPDIVNFVH+N++KN RQPYAVS++AGHQT Sbjct: 7 PLVTVQVLKSDMATDGGNAVPLPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQT 66
Query: 222 SAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRY 401 SAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWR+WHRKIN+NQKRY Sbjct: 67 SAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRY 126
Query: 402 AVVSALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 AVVSA+AASA+PSLV+ARGHRIE VPE+PLV+ +S ES+EK Sbjct: 127 AVVSAIAASAVPSLVMARGHRIESVPELPLVIGDSAESVEK 167
>tr|A9RI50|A9RI50_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_109466 PE=4 SV=1 Length = 403
Score = 265 bits (678), Expect = 1e-69 Identities = 127/158 (80%), Positives = 139/158 (87%) Frame = +3
Query: 51 PLVTVQSADGDAMTESTTLPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGHQTSAE 230 PLVTVQS DG + TTLP V APIRPD+V VH +AKNKRQ YAVS KAGHQTSAE Sbjct: 8 PLVTVQSVDGAEKSAQTTLPAVFLAPIRPDVVATVHTALAKNKRQAYAVSSKAGHQTSAE 67
Query: 231 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRYAVV 410 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT+IWR+WHRK+NLNQKRYA+ Sbjct: 68 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTQIWRRWHRKVNLNQKRYAIA 127
Query: 411 SALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 SALAASA+PSLVLARGH+IEQVPEVPLVL + E++EK Sbjct: 128 SALAASAVPSLVLARGHKIEQVPEVPLVLSDGAEAIEK 165
>tr|A7PSS7|A7PSS7_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023068001 PE=4 SV=1 Length = 406
Score = 265 bits (678), Expect = 1e-69 Identities = 128/161 (79%), Positives = 144/161 (89%), Gaps = 3/161 (1%) Frame = +3
Query: 51 PLVTVQSADGDAMTE---STTLPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGHQT 221 PLVTVQ D T+ + LPDV+KA IRPDIV FVH+N++KN RQPYAVS++AGHQT Sbjct: 8 PLVTVQVLKSDMATDGGNAVPLPDVMKASIRPDIVTFVHSNISKNSRQPYAVSRRAGHQT 67
Query: 222 SAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRY 401 SAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWR+WHRKIN+NQKRY Sbjct: 68 SAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRY 127
Query: 402 AVVSALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 AVVSA+AASAIPSLV+ARGHRIE VPE+PLV+ +S ES+EK Sbjct: 128 AVVSAIAASAIPSLVMARGHRIESVPELPLVIGDSAESVEK 168
>tr|A9RN38|A9RN38_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160075 PE=4 SV=1 Length = 403
Score = 265 bits (677), Expect = 1e-69 Identities = 128/158 (81%), Positives = 136/158 (86%) Frame = +3
Query: 51 PLVTVQSADGDAMTESTTLPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGHQTSAE 230 PLVTVQ DG TLP V APIRPD+V VH +AKNKRQPYAVS KAGHQTSAE Sbjct: 8 PLVTVQGVDGADKGAQATLPAVFLAPIRPDVVATVHTALAKNKRQPYAVSTKAGHQTSAE 67
Query: 231 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRYAVV 410 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWR+WHRK+NLNQKRYA+ Sbjct: 68 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKVNLNQKRYAIA 127
Query: 411 SALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 SALAASA+PSLVLARGHRIEQVPEVPLVL + E +EK Sbjct: 128 SALAASAVPSLVLARGHRIEQVPEVPLVLGDGAEGIEK 165
>tr|A9PJ22|A9PJ22_POPJC Putative uncharacterized protein OS=Populus jackii PE=2 SV=1 Length = 407
Score = 265 bits (676), Expect = 2e-69 Identities = 127/163 (77%), Positives = 147/163 (90%), Gaps = 5/163 (3%) Frame = +3
Query: 51 PLVTVQSAD--GDAMTESTT---LPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGH 215 PLV+VQ+ D +T+S LPDV+KA IRPDIVN+VH+N++KN RQPYAVSKKAGH Sbjct: 7 PLVSVQTLPCLNDMVTDSAATVALPDVMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGH 66
Query: 216 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQK 395 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGA+GNMCRGGRMFAPTKIWR+WHRKIN+NQK Sbjct: 67 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAYGNMCRGGRMFAPTKIWRRWHRKINVNQK 126
Query: 396 RYAVVSALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 RYAVVSA+AASAIPSLV+ARGHR+E VPE+PL++ +S ES+EK Sbjct: 127 RYAVVSAIAASAIPSLVMARGHRVESVPEMPLIISDSAESIEK 169
>tr|Q2PEV4|Q2PEV4_TRIPR Putative 60S ribosomal protein L1 OS=Trifolium pratense PE=2 SV=1 Length = 406
Score = 263 bits (672), Expect = 5e-69 Identities = 126/161 (78%), Positives = 144/161 (89%), Gaps = 3/161 (1%) Frame = +3
Query: 51 PLVTVQSADGDAMTESTT---LPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGHQT 221 PLVTVQ+ D D T+S T +PDV++A IRPDIVNFVH+N++KN RQPYAVS++AGHQT Sbjct: 8 PLVTVQTLDSDMATDSPTTLPIPDVMRASIRPDIVNFVHSNISKNARQPYAVSRRAGHQT 67
Query: 222 SAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRY 401 SAESWGTGRAVSRIPRV GGGTHRAGQ AFGNMCRGGRMFAPT+IWR+WHRKIN+NQKRY Sbjct: 68 SAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRY 127
Query: 402 AVVSALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 AVVSA+AASA+PSLVLARGHRIE VPE PLV+ +S E +EK Sbjct: 128 AVVSAIAASAVPSLVLARGHRIEAVPEFPLVVGDSAEGVEK 168
>tr|A9S181|A9S181_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_180220 PE=4 SV=1 Length = 404
Score = 263 bits (672), Expect = 5e-69 Identities = 127/158 (80%), Positives = 137/158 (86%) Frame = +3
Query: 51 PLVTVQSADGDAMTESTTLPDVLKAPIRPDIVNFVHANMAKNKRQPYAVSKKAGHQTSAE 230 PLVTVQS DG +LP V APIRPD+V VH +AKNKRQPYAVS KAGHQTSAE Sbjct: 9 PLVTVQSIDGGEKGAQASLPAVFLAPIRPDVVATVHTALAKNKRQPYAVSVKAGHQTSAE 68
Query: 231 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRYAVV 410 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWR+WHRK+NLNQKRYA+ Sbjct: 69 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKVNLNQKRYAIA 128
Query: 411 SALAASAIPSLVLARGHRIEQVPEVPLVLDNSVESLEK 524 SALAASA+PSLVLARGH+IEQVPEVPLVL + E +EK Sbjct: 129 SALAASAVPSLVLARGHKIEQVPEVPLVLADGAEHIEK 166
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