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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953222
Clone id TST39A01NGRL0017_D07
Library
Length 440
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_D07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGCAGGAAGTAGACCCTGCTCTTGCTCCCCACAGCTCTTCATAAAGAACTGCGCACCCT
TGTTTGGGATTCCTGCTGAGCTCAAACCTCTAATGAAAGTGGAGGGAGAAGTATCTTTGC
ACGTGGGTTGTCATTTGTGGTCGACACAGATGTGTATAGAATTGAGGACCTGCGTGAAAA
TTTTTGTGTAAGTATGTGCATGCGCTTGTCTTAAGGAAGTCTGTCCACTCACAATGGATC
ACACACTACAGGATATGTCTTTTCACCTACCATTTTTGTTGAGATCTTTGCTCCAAAGAT
GAAAGAGAATTCTTTAATTTTGCCCACATGTATGAGTCTAAAGGATATCTGTATGTGACT
GCGAACTTTGTAAAAGTAAGAAAAGGAATCTGCAATGTTAAGAAAGGAAAAAATCAAAAA
AAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q24JP5
Definition sp|Q24JP5|T132A_HUMAN Transmembrane protein 132A OS=Homo sapiens
Align length 53
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953222|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_D07, 5'
         (407 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q24JP5|T132A_HUMAN Transmembrane protein 132A OS=Homo sapiens...    32   1.3  
sp|P10914|IRF1_HUMAN Interferon regulatory factor 1 OS=Homo sapi...    31   1.7  
sp|P42681|TXK_HUMAN Tyrosine-protein kinase TXK OS=Homo sapiens ...    30   3.7  
sp|Q80WF4|T132A_RAT Transmembrane protein 132A OS=Rattus norvegi...    29   6.3  
sp|Q922P8|T132A_MOUSE Transmembrane protein 132A OS=Mus musculus...    29   6.3  

>sp|Q24JP5|T132A_HUMAN Transmembrane protein 132A OS=Homo sapiens
           GN=TMEM132A PE=2 SV=1
          Length = 1023

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = +3

Query: 48  NCAPLFGIPAELKP-LMKVEG-----EVSLHVGCHLWSTQMCIELRTCVKIFV 188
           N APL G+P  +   L+ V+G     EV+ HVGC   +TQ+      C  +FV
Sbjct: 410 NTAPLTGVPQHVPVRLVTVDGGGALVEVTEHVGCESANTQVLQVSEACDAVFV 462


>sp|P10914|IRF1_HUMAN Interferon regulatory factor 1 OS=Homo sapiens
           GN=IRF1 PE=1 SV=2
          Length = 325

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = -2

Query: 124 TCKDTSPSTFIRGLSSAGIPNKGAQF----FMKSCGEQEQGLLPA 2
           +C D+SP TF  GLSS+ +P+  + +    +M+   E EQ L PA
Sbjct: 139 SCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDL-EVEQALTPA 182


>sp|P42681|TXK_HUMAN Tyrosine-protein kinase TXK OS=Homo sapiens
           GN=TXK PE=1 SV=3
          Length = 527

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 363 RSHIQISFRLIHVGKIKEFSFIFGAKISTKMVGEK 259
           RSHIQ++ + I+ G + E  FI  AK+  K+   K
Sbjct: 291 RSHIQVAIKAINEGSMSEEDFIEEAKVMMKLSHSK 325


>sp|Q80WF4|T132A_RAT Transmembrane protein 132A OS=Rattus norvegicus
           GN=Tmem132a PE=1 SV=1
          Length = 1021

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 48  NCAPLFGIPAELKP-LMKVEG-----EVSLHVGCHLWSTQMCIELRTCVKIFV 188
           N APL G+P  +   L+ V+      EV+ H+GC   +TQ+      C  +FV
Sbjct: 406 NTAPLTGVPQRIPVRLVTVDSGGALEEVTEHIGCESANTQVLQVSEACDAVFV 458


>sp|Q922P8|T132A_MOUSE Transmembrane protein 132A OS=Mus musculus
           GN=Tmem132a PE=2 SV=2
          Length = 1018

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 48  NCAPLFGIPAELKP-LMKVEG-----EVSLHVGCHLWSTQMCIELRTCVKIFV 188
           N APL G+P  +   L+ V+      EV+ H+GC   +TQ+      C  +FV
Sbjct: 406 NTAPLTGVPQRIPVRLVTVDSGGALEEVTEHIGCESANTQVLQVSEACDAVFV 458
tr_hit_id B7NZL0
Definition tr|B7NZL0|B7NZL0_RABIT Interferon regulatory factor 1 (Predicted) OS=Oryctolagus cuniculus
Align length 45
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953222|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_D07, 5'
         (407 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7NZL0|B7NZL0_RABIT Interferon regulatory factor 1 (Predicted...    33   7.2  
tr|Q5FGL2|Q5FGL2_EHRRG Putative uncharacterized protein OS=Ehrli...    33   9.4  
tr|A8J9A4|A8J9A4_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   9.4  
tr|Q8PYX6|Q8PYX6_METMA Nitrogenase molybdenum-iron protein beta ...    33   9.4  

>tr|B7NZL0|B7NZL0_RABIT Interferon regulatory factor 1 (Predicted)
           OS=Oryctolagus cuniculus GN=IRF1 PE=4 SV=1
          Length = 320

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -2

Query: 124 TCKDTSPSTFIRGLSSAGIPNK----GAQFFMKSCGEQEQGLLPA 2
           +C D+SP TF  GLSS+ +P+      AQ ++    E EQ L PA
Sbjct: 139 SCGDSSPDTFSDGLSSSTLPDDHSGYTAQGYIGQDSEVEQALTPA 183


>tr|Q5FGL2|Q5FGL2_EHRRG Putative uncharacterized protein
           OS=Ehrlichia ruminantium (strain Gardel)
           GN=ERGA_CDS_08740 PE=4 SV=1
          Length = 621

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 369 KVRSHIQISFRLIHVGKIKEFSFIFGAK 286
           K+ SH+ IS  LI +  I +FSFIFG +
Sbjct: 329 KITSHVSISVTLIKLNLISQFSFIFGVQ 356


>tr|A8J9A4|A8J9A4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_177061 PE=4 SV=1
          Length = 1866

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 89  RFELSRNPKQGCAVLYEELWGARAGSTS 6
           R E    P +GC VLY++L GA +GST+
Sbjct: 400 RLEALARPSRGCLVLYDDLDGASSGSTT 427


>tr|Q8PYX6|Q8PYX6_METMA Nitrogenase molybdenum-iron protein beta
           chain (NifK) OS=Methanosarcina mazei GN=nifK PE=3 SV=1
          Length = 456

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 161 IEDLRENFCVSMCMRLS*GSLSTHNGSHTTGYVFSPTIFVEIFAPKMKEN 310
           IED+R    +   +++   S  ++ G+H TGY      FV IFA K K N
Sbjct: 119 IEDVRAEELIDPSIKICAASTPSYVGTHITGYDNMVKSFVTIFARKTKPN 168