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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953226
Clone id TST39A01NGRL0017_D11
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_D11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACGCATACACCGCGCACTCACACGGTTCTCATACTCCCTCCATCTCCCTTGCTTAAACG
GTCGCATTGCCAGCTTCTCCCTCTTCTCATCAGTACACCGTAAAGCTTTGCTCCGCCTCA
GCCACCGAGCTTCCTTCTCTCTATCCTTCTGCAGCAATTCTTCAAATCCCACTATACAAG
CTTGTTCTACTTGTGTCTTGAGCTCGCTGCAAGCAGCACTTGCTGGCTGAGTTGCGTGCG
AGGGGCGTAAGCGCGCGGGACCCAGCTCAGATTTTCATATGTTTTCCGTTCTGCGTATGC
GTGTGTGTATTTAGGGCGTATCTTCTTGACGCAGGGCTCCCTCTATATTCTATTATCCCC
TCTTCTGTGTGTGTAAAGAAAGAGCAGATCCCTCACTCTGTCTCTGTTTCTACCTCTAGG
CCATGGATACCTCAGGTTTTGTGACATCTCTCTTAACCTCGCTGATCATCTTTGTGGTGC
TTTATTTGCTGCACGCATGGCTGTCACGGAAACC
■■Homology search results ■■ -
sp_hit_id Q3A734
Definition sp|Q3A734|UVRC_PELCD UvrABC system protein C OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Align length 61
Score (bit) 33.1
E-value 0.79
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953226|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_D11, 5'
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3A734|UVRC_PELCD UvrABC system protein C OS=Pelobacter carbi...    33   0.79 
sp|Q5ABP8|ROT1_CANAL Protein ROT1 OS=Candida albicans GN=ROT1 PE...    32   2.2  
sp|Q52KB6|C2CD3_MOUSE C2 domain-containing protein 3 OS=Mus musc...    32   2.3  
sp|P40416|ATM1_YEAST Iron-sulfur clusters transporter ATM1, mito...    31   3.9  
sp|Q9VYY2|SPCS2_DROME Signal peptidase complex subunit 2 OS=Dros...    30   5.1  
sp|A0KNE3|IF2_AERHH Translation initiation factor IF-2 OS=Aeromo...    30   5.1  
sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus lae...    30   6.7  
sp|Q913D4|POLG_HCVIN Genome polyprotein OS=Hepatitis C virus gen...    30   8.5  
sp|Q650H7|UVRC_BACFR UvrABC system protein C OS=Bacteroides frag...    30   8.7  
sp|Q5LIY7|UVRC_BACFN UvrABC system protein C OS=Bacteroides frag...    30   8.7  
sp|P13025|POL1_GCMV RNA1 polyprotein OS=Grapevine chrome mosaic ...    30   8.7  
sp|Q1D0S7|MRAY_MYXXD Phospho-N-acetylmuramoyl-pentapeptide-trans...    30   8.7  
sp|Q6DJL7|BORA_XENLA Protein aurora borealis OS=Xenopus laevis G...    30   8.7  

>sp|Q3A734|UVRC_PELCD UvrABC system protein C OS=Pelobacter
           carbinolicus (strain DSM 2380 / Gra Bd 1) GN=uvrC PE=3
           SV=1
          Length = 612

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -2

Query: 399 RVRDLLFLYTHRRGDNRI*REPCVKKIRPKYTHAYAERKTYENLSWVPRAYAPRTQLSQQ 220
           RV D+  + T    +  I     +KK RP+Y     + KTY +L   PR   P  QL ++
Sbjct: 58  RVHDIETIVTDTEKEALILENTLIKKYRPRYNINLRDDKTYLSLRLDPRQEFPMLQLVRR 117

Query: 219 V 217
           V
Sbjct: 118 V 118


>sp|Q5ABP8|ROT1_CANAL Protein ROT1 OS=Candida albicans GN=ROT1 PE=3
           SV=1
          Length = 260

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -3

Query: 392 GICSFFT---HTEEGIIEYRGSPASRRYALNTHTHTQNGKHMKI*AGSRALTPLA 237
           GIC  FT   H EE +   + +P +   A+ + T+ Q+GK+  +  GS  LTP+A
Sbjct: 63  GICYSFTKDGHYEEALYRVKPNPKNHSCAVASVTY-QHGKYELLSNGSLVLTPIA 116


>sp|Q52KB6|C2CD3_MOUSE C2 domain-containing protein 3 OS=Mus musculus
            GN=C2cd3 PE=2 SV=2
          Length = 2323

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 346  YSIIPSSVCVKKEQIPHSVSVSTSRPWIP 432
            +  IP  +  K+E++P +V++ST R W+P
Sbjct: 1373 FESIPKDLVKKEEEVPATVTISTPRLWLP 1401


>sp|P40416|ATM1_YEAST Iron-sulfur clusters transporter ATM1,
           mitochondrial OS=Saccharomyces cerevisiae GN=ATM1 PE=1
           SV=2
          Length = 690

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 504 TAMRAANKAPQR*SARLREMSQNLRYPWPRGRNRDRVRDLLFL 376
           T ++  +KAP    + L+ +    RY WP+G N+ R+R L+ L
Sbjct: 75  TQVKKTSKAPTL--SELKILKDLFRYIWPKGNNKVRIRVLIAL 115


>sp|Q9VYY2|SPCS2_DROME Signal peptidase complex subunit 2
           OS=Drosophila melanogaster GN=Spase25 PE=2 SV=1
          Length = 199

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 166 FEELLQKDREKEARWLRRSKALRCTDEKREKLAMRPFKQGRWREYENRVS 17
           F   LQKD+E+E  W   S   +  D+    L++R  K G+ RE  +  S
Sbjct: 110 FAVALQKDKERERLWEASSDMRKYDDKYLLTLSVRDTKNGKRREQSSNKS 159


>sp|A0KNE3|IF2_AERHH Translation initiation factor IF-2 OS=Aeromonas
           hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
           9240) GN=infB PE=3 SV=1
          Length = 897

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
 Frame = -1

Query: 256 ARLRPSHATQPASAACS---------------ELKTQVEQACIVGFEELLQKDREKEARW 122
           A+ +   A QPA AA S               ELK Q EQA +   EEL  K  E EAR 
Sbjct: 159 AQQKARQAQQPAKAAGSTAQQEAEKMAKREAEELKRQQEQAALTKAEELAAKKAE-EARV 217

Query: 121 LRRSKALRCTDEK 83
           +    A R  +E+
Sbjct: 218 MAEQNAARWAEEE 230


>sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus laevis
           GN=dnlz PE=2 SV=1
          Length = 188

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 67  LPASPSSHQYTVKLCSASATELPSLYPSAAILQIPLYKLVLLVS*ARCKQH 219
           LPA+PSSH   +  C   AT       S  I ++  +K V++V    C+ H
Sbjct: 74  LPAAPSSHYRLIYTCKVCATR-----SSKTISKVAYHKGVVIVRCPGCENH 119


>sp|Q913D4|POLG_HCVIN Genome polyprotein OS=Hepatitis C virus genotype
            1c (isolate India) PE=3 SV=3
          Length = 3011

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 411  YL*AMDTSGFVTSLLTSLIIFVVLYLLHAWLS 506
            Y+   D S  VT +LTSL +  +L  LH W+S
Sbjct: 1934 YVPESDASARVTQILTSLTVTQLLKRLHVWIS 1965


>sp|Q650H7|UVRC_BACFR UvrABC system protein C OS=Bacteroides
           fragilis GN=uvrC PE=3 SV=1
          Length = 608

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/67 (22%), Positives = 33/67 (49%)
 Frame = -2

Query: 399 RVRDLLFLYTHRRGDNRI*REPCVKKIRPKYTHAYAERKTYENLSWVPRAYAPRTQLSQQ 220
           ++ D+ ++  +   D  +     +KK +P+Y     + KTY ++  V   Y PR   +++
Sbjct: 68  KIADIRYIVVNSEEDALLLENNLIKKYKPRYNVLLKDDKTYPSIC-VQNEYFPRVFKTRR 126

Query: 219 VLLAASS 199
           ++   SS
Sbjct: 127 IIRNGSS 133


>sp|Q5LIY7|UVRC_BACFN UvrABC system protein C OS=Bacteroides
           fragilis (strain ATCC 25285 / NCTC 9343) GN=uvrC PE=3
           SV=1
          Length = 608

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/67 (22%), Positives = 33/67 (49%)
 Frame = -2

Query: 399 RVRDLLFLYTHRRGDNRI*REPCVKKIRPKYTHAYAERKTYENLSWVPRAYAPRTQLSQQ 220
           ++ D+ ++  +   D  +     +KK +P+Y     + KTY ++  V   Y PR   +++
Sbjct: 68  KIADIRYIVVNSEEDALLLENNLIKKYKPRYNVLLKDDKTYPSIC-VQNEYFPRVFKTRR 126

Query: 219 VLLAASS 199
           ++   SS
Sbjct: 127 IIRNGSS 133
tr_hit_id Q6ZLQ0
Definition tr|Q6ZLQ0|Q6ZLQ0_ORYSJ Os07g0150100 protein OS=Oryza sativa subsp. japonica
Align length 30
Score (bit) 43.5
E-value 0.006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953226|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_D11, 5'
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6ZLQ0|Q6ZLQ0_ORYSJ Os07g0150100 protein OS=Oryza sativa subs...    44   0.006
tr|A7Q192|A7Q192_VITVI Chromosome chr10 scaffold_43, whole genom...    44   0.006
tr|A5C7W9|A5C7W9_VITVI Putative uncharacterized protein OS=Vitis...    44   0.006
tr|A3BGL5|A3BGL5_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.006
tr|A2YI72|A2YI72_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.006
tr|B0FSL2|B0FSL2_MAIZE Early responsive to dehydration protein O...    42   0.023
tr|A9TEC4|A9TEC4_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.067
tr|A9SW37|A9SW37_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.25 
tr|Q9C8G5|Q9C8G5_ARATH Putative uncharacterized protein T4K22.4 ...    37   0.56 
tr|Q94B69|Q94B69_ARATH Putative uncharacterized protein T4K22.4 ...    37   0.56 
tr|A8IXK5|A8IXK5_BRACM Early-responsive to dehydration 4 OS=Bras...    36   1.3  
tr|A8A9Q4|A8A9Q4_IGNH4 Putative uncharacterized protein OS=Ignic...    35   1.7  
tr|A9S3X9|A9S3X9_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.1  
tr|A9LIW2|A9LIW2_BRAJU ERD4 protein OS=Brassica juncea GN=ERD4 P...    35   2.1  
tr|A7TUQ3|A7TUQ3_STRLI Putative uncharacterized protein OS=Strep...    35   2.2  
tr|Q82EB7|Q82EB7_STRAW Putative large ATP-binding protein OS=Str...    34   4.9  
tr|A6KZN8|A6KZN8_BACV8 Excinuclease ABC subunit C OS=Bacteroides...    34   4.9  
tr|A8JNI2|A8JNI2_DROME CG7971, isoform E OS=Drosophila melanogas...    28   5.0  
tr|A8TWJ6|A8TWJ6_9PROT Putative uncharacterized protein OS=alpha...    33   6.4  
tr|Q9W0B0|Q9W0B0_DROME CG7971, isoform C OS=Drosophila melanogas...    27   6.5  
tr|Q960C4|Q960C4_DROME SD07741p OS=Drosophila melanogaster GN=CG...    27   6.5  
tr|Q7YZ99|Q7YZ99_DROME CG7971, isoform A OS=Drosophila melanogas...    27   6.5  
tr|Q4QF94|Q4QF94_LEIMA Putative uncharacterized protein OS=Leish...    33   8.1  

>tr|Q6ZLQ0|Q6ZLQ0_ORYSJ Os07g0150100 protein OS=Oryza sativa subsp.
           japonica GN=OJ1027_G06.20 PE=4 SV=1
          Length = 731

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +3

Query: 423 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           MDT+ FVTSLLTS +IFVVL L+  WLS +
Sbjct: 1   MDTASFVTSLLTSFVIFVVLVLVFTWLSSR 30


>tr|A7Q192|A7Q192_VITVI Chromosome chr10 scaffold_43, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028359001
           PE=4 SV=1
          Length = 282

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 22/30 (73%), Positives = 24/30 (80%)
 Frame = +3

Query: 423 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           MD S F+TSL TS +IFVVL LL AWLSRK
Sbjct: 1   MDFSSFLTSLGTSFLIFVVLMLLFAWLSRK 30


>tr|A5C7W9|A5C7W9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037471 PE=4 SV=1
          Length = 676

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 22/30 (73%), Positives = 24/30 (80%)
 Frame = +3

Query: 423 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           MD S F+TSL TS +IFVVL LL AWLSRK
Sbjct: 1   MDFSSFLTSLGTSFLIFVVLMLLFAWLSRK 30


>tr|A3BGL5|A3BGL5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022187 PE=4 SV=1
          Length = 1280

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +3

Query: 423 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           MDT+ FVTSLLTS +IFVVL L+  WLS +
Sbjct: 1   MDTASFVTSLLTSFVIFVVLVLVFTWLSSR 30


>tr|A2YI72|A2YI72_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24908 PE=4 SV=1
          Length = 731

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +3

Query: 423 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           MDT+ FVTSLLTS +IFVVL L+  WLS +
Sbjct: 1   MDTASFVTSLLTSFVIFVVLVLVFTWLSSR 30


>tr|B0FSL2|B0FSL2_MAIZE Early responsive to dehydration protein
           OS=Zea mays GN=ERD4 PE=2 SV=1
          Length = 732

 Score = 41.6 bits (96), Expect = 0.023
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 423 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           MD + F+TS+LTS +IFV L LL  WLSR+
Sbjct: 1   MDLTSFITSVLTSFVIFVALVLLFTWLSRR 30


>tr|A9TEC4|A9TEC4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_194222 PE=4 SV=1
          Length = 744

 Score = 40.0 bits (92), Expect = 0.067
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = +3

Query: 429 TSGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           TS FVTSLLTSLIIFVVL LL   LSR+
Sbjct: 4   TSAFVTSLLTSLIIFVVLLLLFLVLSRR 31


>tr|A9SW37|A9SW37_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84744 PE=4 SV=1
          Length = 734

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 17/27 (62%), Positives = 25/27 (92%)
 Frame = +3

Query: 432 SGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           S F+TSL+TSLI+F+VL+L++A LSR+
Sbjct: 5   SSFITSLVTSLIVFLVLWLVYAILSRR 31


>tr|Q9C8G5|Q9C8G5_ARATH Putative uncharacterized protein T4K22.4
           (Putative uncharacterized protein At1g30360)
           OS=Arabidopsis thaliana GN=At1g30360 PE=2 SV=1
          Length = 724

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 423 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           M+   F+ SL TS +IFV+L LL  WLSRK
Sbjct: 1   MEFGSFLVSLGTSFVIFVILMLLFTWLSRK 30


>tr|Q94B69|Q94B69_ARATH Putative uncharacterized protein T4K22.4
           (Fragment) OS=Arabidopsis thaliana GN=T4K22.4 PE=2 SV=1
          Length = 532

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 423 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRK 512
           M+   F+ SL TS +IFV+L LL  WLSRK
Sbjct: 1   MEFGSFLVSLGTSFVIFVILMLLFTWLSRK 30