DK953274 |
Clone id |
TST39A01NGRL0017_F12 |
Library |
TST39 |
Length |
589 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_F12. 5' end sequence. |
Accession |
DK953274 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL307Contig1 |
Sequence |
GGCACTCAAATTTAGCTGTTGCGCCATCGCATCGGTCATAAGAAGCAATTCCTTGTCGCC ACAACTTCTCCTCTTCGTCCTGCCTGCCTTCTTTTAATTCCCTTTCTCAGCACCATTCCT GTTACATCCCTCTCTTGCACCATGGCCAAGGATCCCGTCCGCGTTCTTGTCACAGGAGCT GCAGGGCAAATTGGATATGCCCTAGTTCCAATGATAGCGAGGGGAGTGATGTTGGGACCG GACCAGCCCATTATCTTGCACATGCTGGATATTCCTCCAGCTGCTGAGGCTTTGAATGGT GTCAAGATGGAGCTTGTCGATGCAGCATTCCCTCTCCTTAAGGGTGTTGTTGCCACCACT GATGTCGTGGAGGCTTGCAAGGGTGTGAACATTGCAATCATGGTTGGGGGCTTTCCTCGT AAAGAGGGCATGGAGAGGAAGGATGTCATGTCGAAGAATGTGTCCATATACAAGTCGCAA GCATCAGCATTGGAAGAACATGCAGCAAAAGACTTGAAGGTTTTAGTAGTTGCCAATCCT GCAAACACCAACGCCCTCATTTTGAAGGAATTCGCACCTTCTATACCTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O48905 |
Definition |
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa |
Align length |
149 |
Score (bit) |
274.0 |
E-value |
2.0e-73 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953274|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_F12, 5' (589 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medica... 274 2e-73 sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea ma... 271 1e-72 sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Ara... 268 1e-71 sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza ... 267 3e-71 sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Ara... 267 3e-71 sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesemb... 266 7e-71 sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta v... 265 2e-70 sp|Q54GE6|MDHA_DICDI Probable malate dehydrogenase 1 OS=Dictyost... 170 6e-42 sp|Q7NZ60|MDH_CHRVO Malate dehydrogenase OS=Chromobacterium viol... 169 7e-42 sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic OS=Echino... 168 2e-41 sp|Q46YU4|MDH_RALEJ Malate dehydrogenase OS=Ralstonia eutropha (... 166 1e-40 sp|Q0K8F5|MDH_RALEH Malate dehydrogenase OS=Ralstonia eutropha (... 166 1e-40 sp|Q1LKG0|MDH_RALME Malate dehydrogenase OS=Ralstonia metallidur... 164 4e-40 sp|A5G320|MDH_ACICJ Malate dehydrogenase OS=Acidiphilium cryptum... 163 7e-40 sp|Q21K60|MDH_SACD2 Malate dehydrogenase OS=Saccharophagus degra... 162 1e-39 sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic OS=Homo s... 162 1e-39 sp|O88989|MDHC_RAT Malate dehydrogenase, cytoplasmic OS=Rattus n... 162 2e-39 sp|P14152|MDHC_MOUSE Malate dehydrogenase, cytoplasmic OS=Mus mu... 161 2e-39 sp|A5WGM2|MDH_PSYWF Malate dehydrogenase OS=Psychrobacter sp. (s... 161 3e-39 sp|Q4FQU7|MDH_PSYA2 Malate dehydrogenase OS=Psychrobacter arctic... 161 3e-39 sp|Q1Q932|MDH_PSYCK Malate dehydrogenase OS=Psychrobacter cryoha... 160 4e-39 sp|Q0ABE6|MDH_ALHEH Malate dehydrogenase OS=Alkalilimnicola ehrl... 160 4e-39 sp|Q0VQ52|MDH_ALCBS Malate dehydrogenase OS=Alcanivorax borkumen... 160 6e-39 sp|Q5ZME2|MDHC_CHICK Malate dehydrogenase, cytoplasmic OS=Gallus... 160 6e-39 sp|A4JM71|MDH2_BURVG Malate dehydrogenase 2 OS=Burkholderia viet... 160 6e-39 sp|Q393V1|MDH_BURS3 Malate dehydrogenase OS=Burkholderia sp. (st... 159 8e-39 sp|P80536|MDH_BURPS Malate dehydrogenase OS=Burkholderia pseudom... 159 8e-39 sp|A3NM97|MDH_BURP6 Malate dehydrogenase OS=Burkholderia pseudom... 159 8e-39 sp|Q3JKE9|MDH_BURP1 Malate dehydrogenase OS=Burkholderia pseudom... 159 8e-39 sp|A3P7Q9|MDH_BURP0 Malate dehydrogenase OS=Burkholderia pseudom... 159 8e-39
>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1 Length = 332
Score = 274 bits (701), Expect = 2e-73 Identities = 140/149 (93%), Positives = 145/149 (97%) Frame = +1
Query: 142 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 321 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQP+ILHMLDI PAAE+LNGVKMELVD Sbjct: 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVD 60
Query: 322 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 501 AAFPLLKGVVATTDVVEAC GVNIA+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE+H Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 502 AAKDLKVLVVANPANTNALILKEFAPSIP 588 AA + KVLVVANPANTNALILKEFAPSIP Sbjct: 121 AAANCKVLVVANPANTNALILKEFAPSIP 149
>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2 Length = 332
Score = 271 bits (694), Expect = 1e-72 Identities = 138/149 (92%), Positives = 144/149 (96%) Frame = +1
Query: 142 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 321 MAK+P+RVLVTGAAGQIGYALVPMIARGVMLG DQP+ILHMLDIPPAAEALNGVKMELVD Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 322 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 501 AAFPLLKGVVATTDVVEAC GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE H Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 502 AAKDLKVLVVANPANTNALILKEFAPSIP 588 AA + KVLVVANPANTNALILKEFAPSIP Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIP 149
>sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2 Length = 332
Score = 268 bits (686), Expect = 1e-71 Identities = 134/149 (89%), Positives = 143/149 (95%) Frame = +1
Query: 142 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 321 MAK+PVRVLVTGAAGQIGYALVPMIARG+MLG DQP+ILHMLDIPPAAEALNGVKMEL+D Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 322 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 501 AAFPLLKGVVATTD VE C GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQA+ALE+H Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 502 AAKDLKVLVVANPANTNALILKEFAPSIP 588 AA + KVLVVANPANTNALILKEFAPSIP Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIP 149
>sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3 Length = 332
Score = 267 bits (683), Expect = 3e-71 Identities = 134/149 (89%), Positives = 143/149 (95%) Frame = +1
Query: 142 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 321 MAK+P+RVLVTGAAGQIGYALVPMIARGVMLG DQP+ILHMLDIPPA E+LNG+KMELVD Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVD 60
Query: 322 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 501 AAFPLLKG+VATTDVVEAC GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE H Sbjct: 61 AAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 502 AAKDLKVLVVANPANTNALILKEFAPSIP 588 AA + KVLVVANPANTNALILKEFAPSIP Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIP 149
>sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1 Length = 332
Score = 267 bits (683), Expect = 3e-71 Identities = 136/149 (91%), Positives = 143/149 (95%) Frame = +1
Query: 142 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 321 MAK+PVRVLVTGAAGQIGYALVPMIARG+MLG DQP+ILHMLDIP AAEALNGVKMELVD Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60
Query: 322 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 501 AAFPLLKGVVATTD VEAC GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE+H Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 502 AAKDLKVLVVANPANTNALILKEFAPSIP 588 AA + KVLVVANPANTNALILKEFAPSIP Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIP 149
>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1 Length = 332
Score = 266 bits (679), Expect = 7e-71 Identities = 133/149 (89%), Positives = 143/149 (95%) Frame = +1
Query: 142 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 321 MA +P+RVLVTGAAGQIGYALVPMIARG+MLG +QP+ILHMLDIPPAAEALNGVKMELVD Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 322 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 501 AAFPLLKGVVATTD EACKGVN+A+MVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H Sbjct: 61 AAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
Query: 502 AAKDLKVLVVANPANTNALILKEFAPSIP 588 AA + KVLVVANPANTNALILKEFAPSIP Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIP 149
>sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1 Length = 332
Score = 265 bits (676), Expect = 2e-70 Identities = 134/149 (89%), Positives = 143/149 (95%) Frame = +1
Query: 142 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 321 MA +P+RVLVTGAAGQIGYALVPMIARGVMLG +QP+ILHMLDIPPAAEALNGVKMELVD Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 322 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 501 AAFPLLKGVVATTDV EACKGVN+A+MVGGFPRKEGMERKDVM KNVSIYKSQASALE++ Sbjct: 61 AAFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQY 120
Query: 502 AAKDLKVLVVANPANTNALILKEFAPSIP 588 AA + KVLVVANPANTNALILKEFAPSIP Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIP 149
>sp|Q54GE6|MDHA_DICDI Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1 Length = 391
Score = 170 bits (430), Expect = 6e-42 Identities = 85/145 (58%), Positives = 109/145 (75%) Frame = +1
Query: 154 PVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVDAAFP 333 P++VLVTGAAGQI Y+L+ MIA G M GP QP+ILH+LDIP A+AL GV MEL D ++P Sbjct: 61 PIKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHLLDIPKMADALKGVVMELQDCSYP 120
Query: 334 LLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEHAAKD 513 LL+ VVATTD+ A +N+AI+VG FPR GM+RKD++ NVSI+K Q AL ++A++ Sbjct: 121 LLQSVVATTDIQTAFLHINVAILVGAFPRGPGMQRKDLLKVNVSIFKEQGEALNKYASRG 180
Query: 514 LKVLVVANPANTNALILKEFAPSIP 588 +KVLVV NPANTNAL A +P Sbjct: 181 VKVLVVGNPANTNALTALMKASDLP 205
>sp|Q7NZ60|MDH_CHRVO Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1 Length = 326
Score = 169 bits (429), Expect = 7e-42 Identities = 88/146 (60%), Positives = 107/146 (73%) Frame = +1
Query: 148 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVDAA 327 K PVRV VTGAAGQIGY+L+ IA G MLG DQP+ILH+LD+P A AL GV MEL D A Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILHLLDLPQAQTALKGVMMELEDCA 61
Query: 328 FPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEHAA 507 FPLL G+VAT D A K V +A++VG PR +GMERKD++ N +I+ Q AL +HAA Sbjct: 62 FPLLAGMVATDDPNVAFKDVKVALLVGARPRSKGMERKDLLEANGAIFTVQGKALNDHAA 121
Query: 508 KDLKVLVVANPANTNALILKEFAPSI 585 +D+KVLVV NPANTNA I + AP + Sbjct: 122 RDVKVLVVGNPANTNAWIAMKSAPDL 147
>sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2 Length = 332
Score = 168 bits (425), Expect = 2e-41 Identities = 83/145 (57%), Positives = 108/145 (74%) Frame = +1
Query: 154 PVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVDAAFP 333 P+RVL+TGAAGQI Y L M+A G + G DQ IILH+LDIP A L+GV MEL D AF Sbjct: 4 PLRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAFT 63
Query: 334 LLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEHAAKD 513 +L G+V T + EA +++A+MVG PRK+GMER+D++S NV I+K Q AL+++A K Sbjct: 64 VLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKKT 123
Query: 514 LKVLVVANPANTNALILKEFAPSIP 588 +KVLVV NPANTN LI+ ++APSIP Sbjct: 124 VKVLVVGNPANTNCLIMSKYAPSIP 148
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9FT00 |
Definition |
tr|Q9FT00|Q9FT00_CICAR Malate dehydrogenase OS=Cicer arietinum |
Align length |
149 |
Score (bit) |
278.0 |
E-value |
2.0e-73 |
Report |
|