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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953276
Clone id TST39A01NGRL0017_F14
Library
Length 559
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_F14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAGTAAAGAACGAGCTAGTGAAGCATGCCGTTGTTCTTTTGTGCTCGAAGGCATTGATA
AGATCACAGATTCCTAGCTTTACATTTAGCTCTTGACGCTCCCCTGCCTTTCTAGCTTTA
TATTCCACTCTCAAGCTTCTAATTTTGAAGCAGAGAGCAGAGCCCAATTTCTGAAGCAGG
GGGGAGCCCAATTCTGAAGAAGGGCGGAGCCCAAGCGGCCCAATGCAGAAGAGTGGCAGC
ACCATGGCCAGTGTAGGCAGAGATGAGAGGGAAGAAGAGCTAGCCCTGTTTCATGAAGTG
CTAAGACGAGAGCACGAGCGGAAGAGCAGTGCCATCCATCCCCTGCCTCCTCATGACGCA
GATCAACTCCACTCTGGATCAGTTAACGCATCATTGTGGCATCAGATGGCATCATCTCCA
GCCAAAATGACACTAACTAGTGCAAATAACAAGTTAGTTGTCGATAACTCCCAAACTATA
GATTTGAATCTGAAAAACGATGACCTTCTTACAGCAGAGTTAGGCAAGAATGACTATGAC
TGGTTGCTTACTCCTCCTG
■■Homology search results ■■ -
sp_hit_id Q8LE59
Definition sp|Q8LE59|IRT3_ARATH Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana
Align length 116
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953276|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_F14, 5'
         (559 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LE59|IRT3_ARATH Fe(2+) transport protein 3, chloroplastic O...    33   1.2  
sp|Q67TP9|HSFB1_ORYSJ Heat stress transcription factor B-1 OS=Or...    31   3.6  
sp|Q7S9I1|SHE9_NEUCR Sensitive to high expression protein 9 homo...    31   4.7  
sp|Q9YAZ0|SYV_AERPE Valyl-tRNA synthetase OS=Aeropyrum pernix GN...    30   6.2  
sp|Q9ESZ0|XRCC1_RAT DNA repair protein XRCC1 OS=Rattus norvegicu...    30   8.1  
sp|A5DF78|END3_PICGU Actin cytoskeleton-regulatory complex prote...    30   8.1  

>sp|Q8LE59|IRT3_ARATH Fe(2+) transport protein 3, chloroplastic
           OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2
          Length = 389

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
 Frame = +1

Query: 46  SKALIRSQIPSFTFSS*RSPAFLALYSTLKLLILKQRAEPNF*SRGEPNSEEGRSPSGPM 225
           ++AL    +P F +S    P F A+ + L  L +       +  + E  + E   P G  
Sbjct: 86  TEALKNPCLPDFPWSKFPFPGFFAMIAALITLFVDFMGTQYYERKQEREASESVEPFGRE 145

Query: 226 QKSGSTMASVGRDER------EEELALFHEVLRREHERKSSAIHPLPPHDADQLHS 375
           Q  G  +  +G          EE+    H V    H       HP P HD+ + HS
Sbjct: 146 QSPGIVVPMIGEGTNDGKVFGEEDSGGIHIVGIHAHAAHHRHSHP-PGHDSCEGHS 200


>sp|Q67TP9|HSFB1_ORYSJ Heat stress transcription factor B-1 OS=Oryza
           sativa subsp. japonica GN=HSFB1 PE=2 SV=1
          Length = 302

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +1

Query: 340 PLPPHDADQLHSGSVNASLWHQMASSPAKMTLTSANNKLVVDNSQTIDLNL 492
           PLPP  +    SG+  +S     ASSP +  +TS N +L  DN QT+ + L
Sbjct: 145 PLPPEPSATTSSGNDRSS---SSASSPPRADITSENEQLRKDN-QTLTMEL 191


>sp|Q7S9I1|SHE9_NEUCR Sensitive to high expression protein 9
           homolog, mitochondrial OS=Neurospora crassa GN=she-9
           PE=3 SV=1
          Length = 553

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 5/120 (4%)
 Frame = +1

Query: 175 SRGEPNSEEGRSPSGPMQKSGSTMASVGRDEREEELALFHEVLRREHERKSSAIHPLPPH 354
           S G+P    GR+        G+   +   +E  EE A   +  +++ +++    H  P  
Sbjct: 415 SSGDPQGGGGRTEGEVEMDIGAEFMAAAAEEAAEEAATAQQQQQQQQQQQQQQHHQTPET 474

Query: 355 DADQLH---SGSVNASLWHQMASSPAKMTLTSANNKLVVD--NSQTIDLNLKNDDLLTAE 519
             +      +    A  W Q  S P ++         VVD  + + IDL +++  LL  E
Sbjct: 475 QEEPQQPPLTWKQTAQKWQQTLSDPQQI------KAAVVDLYSDRRIDLKMRDVSLLALE 528


>sp|Q9YAZ0|SYV_AERPE Valyl-tRNA synthetase OS=Aeropyrum pernix
           GN=valS PE=3 SV=3
          Length = 823

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
 Frame = +1

Query: 259 RDEREEELALFHEVLRREHERKSSAIHPLPPHDADQLH----SGSVNASLWHQMASSPAK 426
           R+E+E   A  HE+LR    R   A+ P+ P   D +H      SV+   W     +P +
Sbjct: 682 REEQEAAWATLHELLR----RILVALSPIMPFVTDAIHRRLYGSSVHRQRWPDPLFTPEE 737

Query: 427 MTLTSANNKLVVDNSQTIDLNLKNDDLLTAELGKNDYDWLLT 552
               +   +L+V  ++ +  NLK        +GK  Y+ L T
Sbjct: 738 RRELAGKARLIVSVNKAV-WNLKR------SMGKKLYEPLDT 772


>sp|Q9ESZ0|XRCC1_RAT DNA repair protein XRCC1 OS=Rattus norvegicus
           GN=Xrcc1 PE=2 SV=2
          Length = 631

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 187 PNSEEGRSPS-GPMQKSGST-MASVGRDEREEELALFHEVLRREHERKSSAIHPLPPHDA 360
           P  EE ++PS GP   S +    S GRD   E+     + LRR  +++     P P  + 
Sbjct: 451 PTPEETKAPSPGPQDNSDTDGEQSEGRDNGAEDSGDTEDELRRVAKQREQRQPPAPEENG 510

Query: 361 DQLHSGSVN 387
           +  ++GS +
Sbjct: 511 EDPYAGSTD 519


>sp|A5DF78|END3_PICGU Actin cytoskeleton-regulatory complex protein
           END3 OS=Pichia guilliermondii GN=END3 PE=3 SV=2
          Length = 379

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 421 AKMTLTSANNKLVVDNSQTIDLNLKNDDLLTAELGKNDYDWLLTP 555
           +K  L  AN  +   N+Q       NDD    EL  +D+DW ++P
Sbjct: 95  SKAYLIQANRAVATGNNQYDGGRSSNDDEEDEELLSDDFDWYISP 139
tr_hit_id A7Q3F2
Definition tr|A7Q3F2|A7Q3F2_VITVI Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera
Align length 111
Score (bit) 51.2
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953276|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_F14, 5'
         (559 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q3F2|A7Q3F2_VITVI Chromosome chr13 scaffold_48, whole genom...    51   4e-05
tr|Q9S7V5|Q9S7V5_ARATH T16O11.4 protein (At3g09000) (Putative un...    49   2e-04
tr|B6UBN2|B6UBN2_MAIZE Putative uncharacterized protein OS=Zea m...    47   7e-04
tr|Q494P4|Q494P4_ARATH At2g40070 (En/Spm-like transposon protein...    45   0.003
tr|O04210|O04210_ARATH En/Spm-like transposon protein OS=Arabido...    45   0.003
tr|Q75GL8|Q75GL8_ORYSJ Os05g0480600 protein OS=Oryza sativa subs...    42   0.017
tr|B8AZA7|B8AZA7_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.017
tr|A3B556|A3B556_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.017
tr|Q5ZEN5|Q5ZEN5_ORYSJ Putative proteophosphoglycan OS=Oryza sat...    42   0.030
tr|Q0JQS7|Q0JQS7_ORYSJ cDNA clone:J023068G12, full insert sequen...    42   0.030
tr|B7ZYB1|B7ZYB1_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.030
tr|B6T691|B6T691_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.030
tr|B6SY29|B6SY29_MAIZE Transposon protein CACTA, En/Spm sub-clas...    42   0.030
tr|B6SWV7|B6SWV7_MAIZE Transposon protein CACTA, En/Spm sub-clas...    42   0.030
tr|A5C286|A5C286_VITVI Putative uncharacterized protein OS=Vitis...    41   0.050
tr|A5C4I8|A5C4I8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.086
tr|Q5QLZ3|Q5QLZ3_ORYSJ Gastric mucin-like protein (Os01g0819000 ...    40   0.11 
tr|B8AD70|B8AD70_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.11 
tr|B8ABB2|B8ABB2_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.11 
tr|Q9C9Y9|Q9C9Y9_ARATH Putative uncharacterized protein F17O14.1...    39   0.15 
tr|Q9C6N3|Q9C6N3_ARATH Transposon protein, putative OS=Arabidops...    39   0.15 
tr|A7PP37|A7PP37_VITVI Chromosome chr8 scaffold_23, whole genome...    39   0.15 
tr|Q01YS6|Q01YS6_SOLUE Putative uncharacterized protein OS=Solib...    38   0.43 
tr|B7ZY23|B7ZY23_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.43 
tr|A7QBR5|A7QBR5_VITVI Chromosome chr1 scaffold_75, whole genome...    37   0.73 
tr|B6UGT9|B6UGT9_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.95 
tr|Q6BPU2|Q6BPU2_DEBHA DEHA2E10824p OS=Debaryomyces hansenii GN=...    37   0.95 
tr|A5AFP6|A5AFP6_VITVI Putative uncharacterized protein (Chromos...    36   1.2  
tr|B8A2R5|B8A2R5_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.6  
tr|A8MRI7|A8MRI7_ARATH Uncharacterized protein At2g40070.2 OS=Ar...    36   1.6  

>tr|A7Q3F2|A7Q3F2_VITVI Chromosome chr13 scaffold_48, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029266001
           PE=4 SV=1
          Length = 520

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 41/111 (36%), Positives = 56/111 (50%)
 Frame = +1

Query: 226 QKSGSTMASVGRDEREEELALFHEVLRREHERKSSAIHPLPPHDADQLHSGSVNASLWHQ 405
           Q+ GS  +SV + E++EELALF E+ +RE ER     H L   D+++      +A L  +
Sbjct: 21  QQVGSLRSSVMK-EKDEELALFLEMRKREKERS----HLLLLQDSEEF-----DAPLGAK 70

Query: 406 MASSPAKMTLTSANNKLVVDNSQTIDLNLKNDDLLTAELGKNDYDWLLTPP 558
             SSP      S   +  V            DD L ++  KNDYDWLLTPP
Sbjct: 71  PGSSPIFNIAPSPPPRKTVA-----------DDFLNSDNDKNDYDWLLTPP 110


>tr|Q9S7V5|Q9S7V5_ARATH T16O11.4 protein (At3g09000) (Putative
           uncharacterized protein At3g09000) (AT3g09000/T16O11_4)
           (MZB10.3 protein) OS=Arabidopsis thaliana GN=MZB10.3
           PE=2 SV=1
          Length = 541

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
 Frame = +1

Query: 265 EREEELALFHEVLRREHERKSSAIHPLPPHDADQLHSGS----VNASLWHQMASSPAKMT 432
           +R+EEL+LF E+ RRE E           H AD L +GS    +NA+L    A++ + ++
Sbjct: 5   DRDEELSLFLEMRRREKE-----------HRADSLLTGSDNVSINATLTAAAAAALSGVS 53

Query: 433 LTSANNKLVVDNSQTIDLNLKNDDLLTAELGKNDYDWLLTPP 558
            T+++ +  +  +         ++ L +E  K+DYDWLLTPP
Sbjct: 54  ETASSQRYPLRRTAA-------ENFLYSENEKSDYDWLLTPP 88


>tr|B6UBN2|B6UBN2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 168

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 39/100 (39%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
 Frame = +1

Query: 265 EREEELALFHEVLRREHERKSSAIHPLPPHDADQLH-SGSVNASLWHQMASSPAKMTLTS 441
           E++EE ALF E+ RRE ER ++A        ADQL  SG V A     +   P       
Sbjct: 23  EKDEEFALFLEMRRREKERGAAAAA------ADQLLLSGDVAAENGMLLLDPPPPAEPKP 76

Query: 442 ANNKLVVDNSQTIDLNLKNDDLLTAELG-KNDYDWLLTPP 558
           A  K+     +     +  DD L A+   KNDYDWLLTPP
Sbjct: 77  AAYKVAGGGFRRAPGGV--DDFLNADASDKNDYDWLLTPP 114


>tr|Q494P4|Q494P4_ARATH At2g40070 (En/Spm-like transposon protein)
           OS=Arabidopsis thaliana GN=At2g40070 PE=2 SV=1
          Length = 607

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 29/98 (29%), Positives = 45/98 (45%)
 Frame = +1

Query: 265 EREEELALFHEVLRREHERKSSAIHPLPPHDADQLHSGSVNASLWHQMASSPAKMTLTSA 444
           E++EEL+LF E+ RRE E+ +  ++  P      L S    + +++  + +P        
Sbjct: 30  EKDEELSLFLEMRRREKEQDNLLLNNNPDEFETPLGSKHGTSPVFNISSGAPPSRKAAP- 88

Query: 445 NNKLVVDNSQTIDLNLKNDDLLTAELGKNDYDWLLTPP 558
                             DD L +E  KNDY+WLLTPP
Sbjct: 89  ------------------DDFLNSEGDKNDYEWLLTPP 108


>tr|O04210|O04210_ARATH En/Spm-like transposon protein
           OS=Arabidopsis thaliana GN=At2g40070 PE=2 SV=1
          Length = 510

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 29/98 (29%), Positives = 45/98 (45%)
 Frame = +1

Query: 265 EREEELALFHEVLRREHERKSSAIHPLPPHDADQLHSGSVNASLWHQMASSPAKMTLTSA 444
           E++EEL+LF E+ RRE E+ +  ++  P      L S    + +++  + +P        
Sbjct: 3   EKDEELSLFLEMRRREKEQDNLLLNNNPDEFETPLGSKHGTSPVFNISSGAPPSRKAAP- 61

Query: 445 NNKLVVDNSQTIDLNLKNDDLLTAELGKNDYDWLLTPP 558
                             DD L +E  KNDY+WLLTPP
Sbjct: 62  ------------------DDFLNSEGDKNDYEWLLTPP 81


>tr|Q75GL8|Q75GL8_ORYSJ Os05g0480600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0018K15.21 PE=2 SV=1
          Length = 590

 Score = 42.4 bits (98), Expect = 0.017
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +1

Query: 499 DDLLTAELGKNDYDWLLTPP 558
           +DLL AE+GKNDYDWLLTPP
Sbjct: 2   EDLLGAEVGKNDYDWLLTPP 21


>tr|B8AZA7|B8AZA7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20357 PE=4 SV=1
          Length = 590

 Score = 42.4 bits (98), Expect = 0.017
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +1

Query: 499 DDLLTAELGKNDYDWLLTPP 558
           +DLL AE+GKNDYDWLLTPP
Sbjct: 2   EDLLGAEVGKNDYDWLLTPP 21


>tr|A3B556|A3B556_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018178 PE=4 SV=1
          Length = 796

 Score = 42.4 bits (98), Expect = 0.017
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +1

Query: 499 DDLLTAELGKNDYDWLLTPP 558
           +DLL AE+GKNDYDWLLTPP
Sbjct: 2   EDLLGAEVGKNDYDWLLTPP 21


>tr|Q5ZEN5|Q5ZEN5_ORYSJ Putative proteophosphoglycan OS=Oryza sativa
           subsp. japonica GN=P0019D06.10 PE=4 SV=1
          Length = 601

 Score = 41.6 bits (96), Expect = 0.030
 Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
 Frame = +1

Query: 235 GSTMASVGRDEREEELALFHEVLRREHERKSSAIHPLPPHDADQLHSGSVNASLWHQ--- 405
           G T+ +V + E++EELALF E+ RRE ER ++A        A+QL        +      
Sbjct: 14  GRTLGAVIK-EKDEELALFLEMRRREKERGAAAAAAA----AEQLLLSGDRVDVARDGML 68

Query: 406 MASSPAKMTLTSANNKLVVDNSQTIDLNLKN--DDLLTAELG-KNDYDWLLTPP 558
           +   P       A +K                 DD L ++ G KNDYDWLLTPP
Sbjct: 69  LVDQPPPRPQPPAEHKAAAYRMTGGFRRAPGGADDFLNSDGGDKNDYDWLLTPP 122


>tr|Q0JQS7|Q0JQS7_ORYSJ cDNA clone:J023068G12, full insert sequence
           OS=Oryza sativa subsp. japonica GN=Os01g0141900 PE=2
           SV=1
          Length = 606

 Score = 41.6 bits (96), Expect = 0.030
 Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
 Frame = +1

Query: 235 GSTMASVGRDEREEELALFHEVLRREHERKSSAIHPLPPHDADQLHSGSVNASLWHQ--- 405
           G T+ +V + E++EELALF E+ RRE ER ++A        A+QL        +      
Sbjct: 19  GRTLGAVIK-EKDEELALFLEMRRREKERGAAAAAAA----AEQLLLSGDRVDVARDGML 73

Query: 406 MASSPAKMTLTSANNKLVVDNSQTIDLNLKN--DDLLTAELG-KNDYDWLLTPP 558
           +   P       A +K                 DD L ++ G KNDYDWLLTPP
Sbjct: 74  LVDQPPPRPQPPAEHKAAAYRMTGGFRRAPGGADDFLNSDGGDKNDYDWLLTPP 127