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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953287
Clone id TST39A01NGRL0017_G01
Library
Length 712
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_G01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTCTCATCAAGAGGTGGTCCACGTACAGGTGGTGGTATGAGGAGCAGGTCTTTCGATCG
TTATGATCGGTATTCTGGATCAGGCAGGGATTCTGGTTGGAGTTCTGGTGGGAGTTCTGG
TGGTAATTCTTGGGGTGGTGGGTCAGGCCGACAGGATGAGCAGCGTTCTGGTGGATGGCG
AAGCAATCAAGGTTATCAAGGAGACAATGGAGGAGGTTACCAGAGGTCTCAGCAAGTGTG
CTTCATTTGCAATGAGCCAGGCCATAGAGCTGCCACGTGCCCAAGGCGCTGAGAGATGAG
ATAATGGAGAGGCTCATTGATCCTACACAATGGTTGGATGTATCAGTTGAGAGGTATTCA
TTTTACTCAAAGCTCGGAGAGTCGAGTATCTAGTACTTCAAGCGCAATGCATCTGGCTCC
CTGCAACTACTTGAAAGCTGATGTAAGCCGTGAGTCTTATTAAGGTGACTCCAAATTGCT
ATCAGGAAATTGAAGCGATCATTTATCAAGTGACAAGTATATAACCTGCTGATGAAAAAG
GGTTCGGGCCACTTCGTTTCGTTGATGATATTGGATTTTTACCGTCATATTTTGATATTC
TACTGGGTATTGTGTATGTAGCTTATCCCTGATGTGGGTTGTTGAAACAAAGAATTTCTC
TTCTCAAACTGAAATTTTTGCTTCCTGGCCAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P31622
Definition sp|P31622|GAG_JSRV Gag polyprotein OS=Sheep pulmonary adenomatosis virus
Align length 17
Score (bit) 36.2
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953287|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_G01, 5'
         (690 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31622|GAG_JSRV Gag polyprotein OS=Sheep pulmonary adenomatos...    36   0.17 
sp|Q8YV57|Y2124_ANASP Uncharacterized WD repeat-containing prote...    31   7.2  
sp|P03322|GAG_RSVP Gag polyprotein OS=Rous sarcoma virus (strain...    30   9.3  
sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago may...    30   9.3  

>sp|P31622|GAG_JSRV Gag polyprotein OS=Sheep pulmonary adenomatosis
           virus GN=gag PE=4 SV=1
          Length = 612

 Score = 36.2 bits (82), Expect = 0.17
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 509 CFVCGQPGHRAAVCPQK 525


>sp|Q8YV57|Y2124_ANASP Uncharacterized WD repeat-containing protein
           all2124 OS=Anabaena sp. (strain PCC 7120) GN=all2124
           PE=4 SV=1
          Length = 1683

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 1   VLIKRWSTYRWWYEE 45
           +LI+ WST RWW EE
Sbjct: 883 ILIRHWSTLRWWLEE 897


>sp|P03322|GAG_RSVP Gag polyprotein OS=Rous sarcoma virus (strain
           Prague C) GN=gag PE=1 SV=1
          Length = 701

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 224 RSQQVCFICNEPGHRAATCPRR 289
           R++ +C+ C  PGH  A CP++
Sbjct: 504 RARGLCYTCGSPGHYQAQCPKK 525


>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis
           GN=BBP PE=3 SV=1
          Length = 625

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 233 QVCFICNEPGHRAATCPRR*EMR*WRGSLILH 328
           Q+C  C   GHRA  CP   E R W   +I H
Sbjct: 368 QLCKNCGNKGHRAFECP---EQRNWTAHIICH 396
tr_hit_id Q9WR75
Definition tr|Q9WR75|Q9WR75_JSRV Gag polyprotein OS=Sheep pulmonary adenomatosis virus
Align length 17
Score (bit) 36.2
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953287|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_G01, 5'
         (690 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9WR75|Q9WR75_JSRV Gag polyprotein OS=Sheep pulmonary adenoma...    36   2.0  
tr|Q9WJ20|Q9WJ20_9BETR Gag polyprotein OS=Ovine enzootic nasal t...    36   2.0  
tr|Q95N68|Q95N68_JSRV Gag polyprotein OS=Sheep pulmonary adenoma...    36   2.0  
tr|Q83955|Q83955_JSRV Gag polyprotein (Fragment) OS=Sheep pulmon...    36   2.0  
tr|Q7SMF1|Q7SMF1_9BETR Gag polyprotein OS=Enzootic nasal tumour ...    36   2.0  
tr|A9S7H7|A9S7H7_PHYPA Predicted protein OS=Physcomitrella paten...    36   2.0  
tr|Q9TTD5|Q9TTD5_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|Q9N1S0|Q9N1S0_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|Q09PL2|Q09PL2_SHEEP Gag protein OS=Ovis aries GN=gag PE=4 SV=1      36   2.0  
tr|A9LHP4|A9LHP4_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|A9LHN2|A9LHN2_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|A9LHM8|A9LHM8_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|A9LHM0|A9LHM0_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|A9LHL3|A9LHL3_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|A9LHJ8|A9LHJ8_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|A9LHJ3|A9LHJ3_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|A9LHI8|A9LHI8_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   2.0  
tr|Q9Y8H2|Q9Y8H2_TRIMT Gag OS=Tricholoma matsutake PE=4 SV=1           36   2.0  
tr|Q6BDM1|Q6BDM1_TRIMT Group specific antigen of marY1 (Fragment...    36   2.0  
tr|Q55HB3|Q55HB3_CRYNE Putative uncharacterized protein OS=Crypt...    36   2.0  
tr|Q2QV09|Q2QV09_ORYSJ Retrotransposon protein, putative, unclas...    36   2.6  
tr|B0XDD6|B0XDD6_CULQU Predicted protein OS=Culex quinquefasciat...    36   2.6  
tr|Q4Q1A0|Q4Q1A0_LEIMA Putative uncharacterized protein OS=Leish...    35   3.4  
tr|A4IDA7|A4IDA7_LEIIN Putative uncharacterized protein OS=Leish...    35   3.4  
tr|A9LHN7|A9LHN7_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              35   4.5  
tr|A9LHM7|A9LHM7_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              35   4.5  
tr|A8GKD9|A8GKD9_SERP5 Binding-protein-dependent transport syste...    35   4.5  
tr|Q8W5K2|Q8W5K2_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    34   7.6  
tr|Q8LMG6|Q8LMG6_ORYSJ Putative retroelement (Retrotransposon pr...    34   7.6  
tr|Q8LM27|Q8LM27_ORYSJ Putative retroelement (Retrotransposon pr...    34   7.6  

>tr|Q9WR75|Q9WR75_JSRV Gag polyprotein OS=Sheep pulmonary
           adenomatosis virus GN=gag PE=4 SV=1
          Length = 611

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 508 CFVCGQPGHRAAVCPQK 524


>tr|Q9WJ20|Q9WJ20_9BETR Gag polyprotein OS=Ovine enzootic nasal
           tumour virus GN=gag PE=4 SV=1
          Length = 613

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 510 CFVCGQPGHRAAVCPQK 526


>tr|Q95N68|Q95N68_JSRV Gag polyprotein OS=Sheep pulmonary
           adenomatosis virus GN=gag PE=4 SV=1
          Length = 611

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 508 CFVCGQPGHRAAVCPQK 524


>tr|Q83955|Q83955_JSRV Gag polyprotein (Fragment) OS=Sheep pulmonary
           adenomatosis virus PE=2 SV=1
          Length = 228

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 198 CFVCGQPGHRAAVCPQK 214


>tr|Q7SMF1|Q7SMF1_9BETR Gag polyprotein OS=Enzootic nasal tumour
           virus of goats PE=4 SV=1
          Length = 612

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 509 CFVCGQPGHRAAVCPQK 525


>tr|A9S7H7|A9S7H7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_125455 PE=4 SV=1
          Length = 689

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 236 VCFICNEPGHRAATC 280
           VCFICN+PGHRAA C
Sbjct: 672 VCFICNQPGHRAADC 686


>tr|Q9TTD5|Q9TTD5_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1
          Length = 616

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 513 CFVCGQPGHRAAVCPQK 529


>tr|Q9N1S0|Q9N1S0_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1
          Length = 616

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 513 CFVCGQPGHRAAVCPQK 529


>tr|Q09PL2|Q09PL2_SHEEP Gag protein OS=Ovis aries GN=gag PE=4 SV=1
          Length = 616

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 513 CFVCGQPGHRAAVCPQK 529


>tr|A9LHP4|A9LHP4_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1
          Length = 616

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 CFICNEPGHRAATCPRR 289
           CF+C +PGHRAA CP++
Sbjct: 513 CFVCGQPGHRAAVCPQK 529