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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953293
Clone id TST39A01NGRL0017_G07
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_G07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCACAGCAGGAGGGCGTCGATATGAGCCCGGCTGCCGTGGATATGAGCAGCAGCGCCAT
GGATGCTCTCTCCTGTGCGAGCCTCTCTGTGCGCCAGTCATCCCTCCGGCGCTGGTCCTC
CTCTCCTCTGTTCGCCAATCGCCTGGCTATGCCCAGCTCTGAGCTTCCTTTGTGCCGCTC
TACCTCAGGTGCTTCGTCGTCTCCTTCAAAGCCTCTCACTATAGCTAACTCTTACAGCCC
CAGGCGGCCTTCTGATAGAAGCTTCAGAAGGGACCAGCCCAACGTGTACGAGCTGGACTT
GGAGGAGCAGGTGAGCCAGATTGATATGGATCCCAACAAGATGCTACAGCCTGGAGACCC
CAATTCTATGCAGGCCATTATTAAGGATGTCATGCCTGTAGGTTACTTCGTCTCTCTGCC
CACAGGCAGAGATGGGTATCTTCCAGCAGATGACTTGGGCTTTACAGGTGGGCTTGCTAT
TCTGCGCAAGCTTTTCAAGGAGGGTCAAGAGATTTA
■■Homology search results ■■ -
sp_hit_id Q8R370
Definition sp|Q8R370|USBP1_MOUSE USH1C-binding protein 1 OS=Mus musculus
Align length 49
Score (bit) 32.3
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953293|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_G07, 5'
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R370|USBP1_MOUSE USH1C-binding protein 1 OS=Mus musculus GN...    32   1.4  
sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03...    31   3.0  
sp|Q8CBR1|ILDR1_MOUSE Immunoglobulin-like domain-containing rece...    30   5.1  
sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS...    30   6.7  
sp|O32848|PGK_MYCAV Phosphoglycerate kinase (Fragment) OS=Mycoba...    30   8.7  
sp|Q94407|NHR48_CAEEL Nuclear hormone receptor family member nhr...    30   8.7  
sp|Q6MG48|BAT2_RAT Large proline-rich protein BAT2 OS=Rattus nor...    30   8.8  
sp|Q7TSC1|BAT2_MOUSE Large proline-rich protein BAT2 OS=Mus musc...    30   8.8  
sp|Q5TM26|BAT2_MACMU Large proline-rich protein BAT2 OS=Macaca m...    30   8.8  
sp|P48634|BAT2_HUMAN Large proline-rich protein BAT2 OS=Homo sap...    30   8.8  
sp|B2RYM0|ANGE1_RAT Protein angel homolog 1 OS=Rattus norvegicus...    30   8.8  
sp|Q8VCU0|ANGE1_MOUSE Protein angel homolog 1 OS=Mus musculus GN...    30   8.8  

>sp|Q8R370|USBP1_MOUSE USH1C-binding protein 1 OS=Mus musculus
           GN=Ushbp1 PE=2 SV=1
          Length = 680

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -1

Query: 171 KGSSELGIARRLANRGEEDQRRRDDWRTERLAQERASMALLLISTAAGL 25
           K  S L +A R A+R +E+QRR+ + +  RL  ++A    +L +TA  L
Sbjct: 619 KAHSALALAFRGAHRKQEEQRRKLEQQVARLQAQQAEELAVLTATARAL 667


>sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03c
           OS=Schizosaccharomyces pombe GN=SPBC359.03c PE=2 SV=1
          Length = 579

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 353 GDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEG 505
           G+   + A+IK V  VG+ +       G +P D  G+ GG  I +K F+ G
Sbjct: 212 GEVEFVLALIKVVATVGFIILAIIINCGGVPTDHRGYIGGSIIKQKPFRHG 262


>sp|Q8CBR1|ILDR1_MOUSE Immunoglobulin-like domain-containing
           receptor 1 OS=Mus musculus GN=Ildr1 PE=2 SV=2
          Length = 537

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 146 PGDWRTEERRTSAGGMTGAQRGSHRREHPWRCCSYPRQ-PGSYR 18
           P  W +EE + S     GAQR  H R    +  ++P + P SYR
Sbjct: 461 PSSWSSEEEKESLPRNWGAQRRHHHRRRRSQSPNWPEEKPPSYR 504


>sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
           NCTC 11154) GN=pnp PE=3 SV=1
          Length = 711

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 380 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEI 514
           ++ VMP G FV    G+DG L   ++ +     I     KEG EI
Sbjct: 636 VRSVMPYGVFVEFLPGKDGLLHISEIDWKRLETIEEAGLKEGDEI 680


>sp|O32848|PGK_MYCAV Phosphoglycerate kinase (Fragment)
           OS=Mycobacterium avium GN=pgk PE=3 SV=2
          Length = 388

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
 Frame = -2

Query: 170 KEAQSWA*PG-----DWRTEERRTSAGGMTGAQRGSHRREHPWRCCSYPRQPGSYRRP 12
           + +Q WA PG       R   R        G  RG HRR  P R     R+P + + P
Sbjct: 68  RASQEWAGPGVVAGPGGRRARRAAGPARAAGLGRGGHRRPGPRRGVDRRRRPAAGKHP 125


>sp|Q94407|NHR48_CAEEL Nuclear hormone receptor family member nhr-48
           OS=Caenorhabditis elegans GN=nhr-48 PE=1 SV=3
          Length = 817

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 502 LLEKLAQNSKPTCKAQVICWKIPISACGQRDEVTYRHDILNNG 374
           L++ + +NS+ TC    +C + P  +C   DEVT   D+LN G
Sbjct: 483 LMKLIQKNSRSTCTCSCMCGRYPPGSC-IVDEVT--KDLLNGG 522


>sp|Q6MG48|BAT2_RAT Large proline-rich protein BAT2 OS=Rattus
           norvegicus GN=Bat2 PE=1 SV=1
          Length = 2161

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 207 EGDDEAPEVERHKGSSELGIA-RRLANRGEEDQRRRDDWRTERLAQE 70
           E +DEA    R + SSE+ +A  R   R EE++RR  + R    A++
Sbjct: 442 EDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEK 488


>sp|Q7TSC1|BAT2_MOUSE Large proline-rich protein BAT2 OS=Mus
           musculus GN=Bat2 PE=1 SV=1
          Length = 2158

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 207 EGDDEAPEVERHKGSSELGIA-RRLANRGEEDQRRRDDWRTERLAQE 70
           E +DEA    R + SSE+ +A  R   R EE++RR  + R    A++
Sbjct: 441 EDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEK 487


>sp|Q5TM26|BAT2_MACMU Large proline-rich protein BAT2 OS=Macaca
           mulatta GN=BAT2 PE=3 SV=1
          Length = 2160

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 207 EGDDEAPEVERHKGSSELGIA-RRLANRGEEDQRRRDDWRTERLAQE 70
           E +DEA    R + SSE+ +A  R   R EE++RR  + R    A++
Sbjct: 443 EDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEK 489


>sp|P48634|BAT2_HUMAN Large proline-rich protein BAT2 OS=Homo
           sapiens GN=BAT2 PE=1 SV=2
          Length = 2157

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 207 EGDDEAPEVERHKGSSELGIA-RRLANRGEEDQRRRDDWRTERLAQE 70
           E +DEA    R + SSE+ +A  R   R EE++RR  + R    A++
Sbjct: 443 EDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEK 489
tr_hit_id B8PN02
Definition tr|B8PN02|B8PN02_9APHY Predicted protein OS=Postia placenta Mad-698-R
Align length 67
Score (bit) 37.0
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953293|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_G07, 5'
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8PN02|B8PN02_9APHY Predicted protein OS=Postia placenta Mad-...    37   0.59 
tr|B8P3D7|B8P3D7_9APHY Predicted protein OS=Postia placenta Mad-...    37   0.59 
tr|B8PMW1|B8PMW1_9APHY Predicted protein OS=Postia placenta Mad-...    37   0.77 
tr|B8PM62|B8PM62_9APHY Predicted protein OS=Postia placenta Mad-...    37   0.77 
tr|B8PIT6|B8PIT6_9APHY Predicted protein OS=Postia placenta Mad-...    37   0.77 
tr|B8P8M1|B8P8M1_9APHY Predicted protein OS=Postia placenta Mad-...    37   0.77 
tr|B8P873|B8P873_9APHY Predicted protein OS=Postia placenta Mad-...    36   1.0  
tr|B8PLX5|B8PLX5_9APHY Predicted protein OS=Postia placenta Mad-...    36   1.3  
tr|B8PLJ0|B8PLJ0_9APHY Predicted protein OS=Postia placenta Mad-...    36   1.3  
tr|B8PJD5|B8PJD5_9APHY Predicted protein OS=Postia placenta Mad-...    36   1.3  
tr|B8P9K3|B8P9K3_9APHY Predicted protein OS=Postia placenta Mad-...    36   1.3  
tr|B8PKA8|B8PKA8_9APHY Predicted protein OS=Postia placenta Mad-...    35   1.7  
tr|B8PJB7|B8PJB7_9APHY Predicted protein OS=Postia placenta Mad-...    35   1.7  
tr|B8P4Q7|B8P4Q7_9APHY Predicted protein OS=Postia placenta Mad-...    35   1.7  
tr|A6LNG6|A6LNG6_THEM4 Hydroxymethylbutenyl pyrophosphate reduct...    35   2.2  
tr|B8P242|B8P242_9APHY Predicted protein OS=Postia placenta Mad-...    35   2.2  
tr|Q08Q81|Q08Q81_STIAU Putative uncharacterized protein OS=Stigm...    35   2.9  
tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo...    34   3.7  
tr|B8PMD6|B8PMD6_9APHY Predicted protein OS=Postia placenta Mad-...    34   3.8  
tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas...    34   4.9  
tr|B8PP92|B8PP92_9APHY Predicted protein OS=Postia placenta Mad-...    34   5.0  
tr|B8PP90|B8PP90_9APHY Predicted protein (Fragment) OS=Postia pl...    34   5.0  
tr|B8PNA0|B8PNA0_9APHY Predicted protein OS=Postia placenta Mad-...    34   5.0  
tr|B8PM98|B8PM98_9APHY Predicted protein OS=Postia placenta Mad-...    34   5.0  
tr|B8PFS3|B8PFS3_9APHY Predicted protein OS=Postia placenta Mad-...    34   5.0  
tr|B8PCX3|B8PCX3_9APHY Predicted protein OS=Postia placenta Mad-...    34   5.0  
tr|B8P9X5|B8P9X5_9APHY Predicted protein OS=Postia placenta Mad-...    34   5.0  
tr|B8P7X9|B8P7X9_9APHY Predicted protein OS=Postia placenta Mad-...    34   5.0  
tr|B8NZP4|B8NZP4_9APHY Predicted protein OS=Postia placenta Mad-...    34   5.0  
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th...    33   6.4  

>tr|B8PN02|B8PN02_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_104026 PE=4 SV=1
          Length = 355

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -1

Query: 201 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 31
           ++EA  VE     ++    RRL +   R EE++RR +D   ER AQE A   L  I+ A 
Sbjct: 101 EEEARRVEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARITAAE 157

Query: 30  GLISTPS 10
           GL+S P+
Sbjct: 158 GLLSDPA 164


>tr|B8P3D7|B8P3D7_9APHY Predicted protein OS=Postia placenta Mad-698-R
            GN=POSPLDRAFT_97308 PE=4 SV=1
          Length = 1213

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -1

Query: 201  DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 31
            ++EA  VE     ++    RRL +   R EE++RR +D   ER AQE A   L  I+ A 
Sbjct: 931  EEEARRVEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 987

Query: 30   GLISTPS 10
            GL+S P+
Sbjct: 988  GLLSDPA 994


>tr|B8PMW1|B8PMW1_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_96931 PE=4 SV=1
          Length = 332

 Score = 36.6 bits (83), Expect = 0.77
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -1

Query: 201 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 31
           ++EA  +E     ++    RRL +   R EE++RR +D   ER AQE A   L  I+ A 
Sbjct: 98  EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 154

Query: 30  GLISTPS 10
           GL+S P+
Sbjct: 155 GLLSDPA 161


>tr|B8PM62|B8PM62_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_98462 PE=4 SV=1
          Length = 249

 Score = 36.6 bits (83), Expect = 0.77
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -1

Query: 201 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 31
           ++EA  +E     ++    RRL +   R EE++RR +D   ER AQE A   L  I+ A 
Sbjct: 115 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 171

Query: 30  GLISTPS 10
           GL+S P+
Sbjct: 172 GLLSDPA 178


>tr|B8PIT6|B8PIT6_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_97913 PE=4 SV=1
          Length = 362

 Score = 36.6 bits (83), Expect = 0.77
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -1

Query: 201 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 31
           ++EA  +E     ++    RRL +   R EE++RR +D   ER AQE A   L  I+ A 
Sbjct: 108 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 164

Query: 30  GLISTPS 10
           GL+S P+
Sbjct: 165 GLLSDPA 171


>tr|B8P8M1|B8P8M1_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_106563 PE=4 SV=1
          Length = 374

 Score = 36.6 bits (83), Expect = 0.77
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -1

Query: 201 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 31
           ++EA  +E     ++    RRL +   R EE++RR +D   ER AQE A   L  I+ A 
Sbjct: 107 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELAQIAAAE 163

Query: 30  GLISTPS 10
           GL+S P+
Sbjct: 164 GLLSDPA 170


>tr|B8P873|B8P873_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_101987 PE=4 SV=1
          Length = 258

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -1

Query: 201 DDEAPEVERHKGSSELGIARRLANRGEEDQRRRDD---WRTE--RLAQERASMALLLIST 37
           ++EA  +E     ++    RRL     ED+RRR D   WR E  R AQE A   L  I+ 
Sbjct: 115 EEEARRIEEAAKRAKAAEDRRL-----EDERRRKDEEEWRLEDERRAQEAADEELAQIAA 169

Query: 36  AAGLISTPS 10
           A GL+S P+
Sbjct: 170 AEGLLSDPA 178


>tr|B8PLX5|B8PLX5_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_95000 PE=4 SV=1
          Length = 369

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -1

Query: 201 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 31
           ++EA  VE     ++    RRL +   R +E++RR +D   ER AQE A   L  I+ A 
Sbjct: 115 EEEAQRVEEAAKRAKAAEERRLEDERRRKDEEERRLED---ERHAQEAADEELARIAAAE 171

Query: 30  GLISTPS 10
           GL+S P+
Sbjct: 172 GLLSDPA 178


>tr|B8PLJ0|B8PLJ0_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_99593 PE=4 SV=1
          Length = 361

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -1

Query: 201 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 31
           ++EA  VE     ++    RRL +   R +E++RR +D   ER AQE A   L  I+ A 
Sbjct: 115 EEEARRVEEAAKRAKAAEERRLEDERRRKDEEERRLED---ERRAQEAADEELARIAAAE 171

Query: 30  GLISTPS 10
           GL+S P+
Sbjct: 172 GLLSDPA 178


>tr|B8PJD5|B8PJD5_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_99321 PE=4 SV=1
          Length = 322

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -1

Query: 201 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 31
           ++EA  VE     ++    RRL +   R +E++RR +D   ER AQE A   L  I+ A 
Sbjct: 46  EEEARRVEEAAKRAKAAEERRLEDERRRKDEEERRLED---ERRAQEAADEELARIAAAE 102

Query: 30  GLISTPS 10
           GL+S P+
Sbjct: 103 GLLSDPA 109