DK953318 |
Clone id |
TST39A01NGRL0017_H08 |
Library |
TST39 |
Length |
576 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_H08. 5' end sequence. |
Accession |
DK953318 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL45Contig1 |
Sequence |
GTTTCGTGATAGTGGACAACCATGGTGTCCCTCAAGCTGCAGAAGCGCCTCGCGGCTAGC GTGCTGAAGTGTGGGAAGCGCAAGGTCTGGCTCGATCCCAATGAGGTCAACGAAATCTCT ATGGCCAATTCAAGGCAAAACATAAGAAAGCTGGTCAAGGATGGCTTTGTGATTCGGAAA CCGACCAAGATTCACTCGCGGGCAAGAGCAAAGCGTGCTTTGGAGGCTAAAAGGAAAGGC CGTCATTCAGGATATGGTAAGAGGCGGGGTACTAGGGAGGCCAGGCTACCCTCTAAAGTT CTCTGGTTGAGGCGTATGCGAGTGCTTCGCCGGTTGCTGAGAAAGTACCGGGAGGCTAAG AAGATTGACAAGCATATGTACCATGATATGTATATGAAGGTCAAGGGTAACGTGTTCAAA AATAAGCGCGTGCTCATGGAGAGTATTCACAAGTCTAAAGCAGAGAAGGCTCGTGAGAAG ACACTGTCTGATCAGTTTGAAGCCCGTAGAGCTAAAGGGAAAAGCTAACAGGGAGCGAAA AAGTGCCAGGAGGGAAGAGCGCTTGGCACAGGGATT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49693 |
Definition |
sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis thaliana |
Align length |
184 |
Score (bit) |
249.0 |
E-value |
9.0e-66 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TS12 |
Definition |
tr|A9TS12|A9TS12_PHYPA Ribosomal protein L19 OS=Physcomitrella patens subsp. patens |
Align length |
168 |
Score (bit) |
254.0 |
E-value |
5.0e-69 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953318|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_H08, 5' (576 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TS12|A9TS12_PHYPA Ribosomal protein L19 OS=Physcomitrella p... 254 5e-69 tr|A9RDS2|A9RDS2_PHYPA Ribosomal protein L19 (Fragment) OS=Physc... 254 1e-68 tr|Q677F2|Q677F2_HYAOR Ribosomal protein L19 OS=Hyacinthus orien... 247 4e-68 tr|Q7XY20|Q7XY20_WHEAT Ribosomal protein L19 OS=Triticum aestivu... 249 9e-68 tr|A9TI47|A9TI47_PHYPA Ribosomal protein L19 OS=Physcomitrella p... 254 2e-66 tr|A9T000|A9T000_PHYPA Ribosomal protein L19 OS=Physcomitrella p... 254 2e-66 tr|A9S5S6|A9S5S6_PHYPA Ribosomal protein L19 OS=Physcomitrella p... 254 2e-66 tr|A9SUU6|A9SUU6_PHYPA Ribosomal protein L19 OS=Physcomitrella p... 254 3e-66 tr|Q8W101|Q8W101_ARATH Ribosomal protein L19 OS=Arabidopsis thal... 243 4e-66 tr|A9SIX0|A9SIX0_PHYPA Ribosomal protein L19 OS=Physcomitrella p... 253 4e-66 tr|A9PB34|A9PB34_POPTR Ribosomal protein L19 OS=Populus trichoca... 253 7e-66 tr|A7Q0G7|A7Q0G7_VITVI Ribosomal protein L19 OS=Vitis vinifera G... 253 7e-66 tr|Q10LR6|Q10LR6_ORYSJ Ribosomal protein L19 OS=Oryza sativa sub... 251 2e-65 tr|A2XGG9|A2XGG9_ORYSI Ribosomal protein L19 OS=Oryza sativa sub... 251 2e-65 tr|A1A4M1|A1A4M1_BOVIN Ribosomal protein L19 OS=Bos taurus PE=2 ... 251 2e-65 tr|B7FHF4|B7FHF4_MEDTR Putative uncharacterized protein OS=Medic... 251 3e-65 tr|A9PC36|A9PC36_POPTR Ribosomal protein L19 OS=Populus trichoca... 251 3e-65 tr|Q84NX8|Q84NX8_ORYSJ Ribosomal protein L19 OS=Oryza sativa sub... 250 3e-65 tr|A9SIX1|A9SIX1_PHYPA Ribosomal protein L19 OS=Physcomitrella p... 250 3e-65 tr|B6VC49|B6VC49_VERFO 60s ribosome protein L19 OS=Vernicia ford... 250 5e-65 tr|B4FL64|B4FL64_MAIZE Putative uncharacterized protein OS=Zea m... 250 5e-65 tr|A2XIU7|A2XIU7_ORYSI Ribosomal protein L19 OS=Oryza sativa sub... 250 5e-65 tr|A9NTG5|A9NTG5_PICSI Ribosomal protein L19 OS=Picea sitchensis... 248 5e-65 tr|B7FH56|B7FH56_MEDTR Putative uncharacterized protein OS=Medic... 249 6e-65 tr|A9P1I1|A9P1I1_PICSI Ribosomal protein L19 OS=Picea sitchensis... 249 6e-65 tr|A9NU99|A9NU99_PICSI Ribosomal protein L19 OS=Picea sitchensis... 249 6e-65 tr|A9NST2|A9NST2_PICSI Ribosomal protein L19 OS=Picea sitchensis... 249 6e-65 tr|A9NRT3|A9NRT3_PICSI Ribosomal protein L19 OS=Picea sitchensis... 249 6e-65 tr|Q6RYC4|Q6RYC4_CAPAN Ribosomal protein L19 OS=Capsicum annuum ... 249 1e-64 tr|Q2PYW9|Q2PYW9_SOLTU Ribosomal protein L19 OS=Solanum tuberosu... 249 1e-64
>tr|A9TS12|A9TS12_PHYPA Ribosomal protein L19 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_108661 PE=3 SV=1 Length = 208
Score = 254 bits (649), Expect(2) = 5e-69 Identities = 132/168 (78%), Positives = 136/168 (80%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MVSLKLQKRLAASVLKCG+RKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKP KIHS Sbjct: 1 MVSLKLQKRLAASVLKCGERKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPQKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKRRGTREARLP+KV +AKKIDKHMY Sbjct: 61 ARARRALEAKRKGRHSGYGKRRGTREARLPTKVLWLRRMRVLRRLLRKYRDAKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS 525 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAK K+ Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKNKA 168
Score = 30.4 bits (67), Expect(2) = 5e-69 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = +2
Query: 515 KGKANRERKSARREERLAQG 574 K KA+RERK +RREER A G Sbjct: 165 KNKASRERKLSRREERQAHG 184
>tr|A9RDS2|A9RDS2_PHYPA Ribosomal protein L19 (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_36400 PE=3 SV=1 Length = 182
Score = 254 bits (649), Expect(2) = 1e-68 Identities = 132/168 (78%), Positives = 136/168 (80%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MVSLKLQKRLAASVLKCG+RKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKP KIHS Sbjct: 1 MVSLKLQKRLAASVLKCGERKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPQKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKRRGTREARLP+KV +AKKIDKHMY Sbjct: 61 ARARRALEAKRKGRHSGYGKRRGTREARLPTKVLWLRRMRVLRRLLRKYRDAKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS 525 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAK K+ Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKNKA 168
Score = 28.9 bits (63), Expect(2) = 1e-68 Identities = 14/18 (77%), Positives = 14/18 (77%) Frame = +2
Query: 515 KGKANRERKSARREERLA 568 K KA RERK ARREER A Sbjct: 165 KNKATRERKIARREERQA 182
>tr|Q677F2|Q677F2_HYAOR Ribosomal protein L19 OS=Hyacinthus orientalis GN=RPL19 PE=2 SV=1 Length = 203
Score = 247 bits (631), Expect(2) = 4e-68 Identities = 126/168 (75%), Positives = 135/168 (80%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MV+LKLQKRL+ASVLKCGK KVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKP KIHS Sbjct: 1 MVALKLQKRLSASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKR+GTREARLP+KV E+KKIDKHMY Sbjct: 61 SRARRAMEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS 525 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKT+SDQFEA+RAK K+ Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTISDQFEAKRAKSKA 168
Score = 34.3 bits (77), Expect(2) = 4e-68 Identities = 16/20 (80%), Positives = 17/20 (85%) Frame = +2
Query: 515 KGKANRERKSARREERLAQG 574 K KA+RERK ARREER AQG Sbjct: 165 KSKASRERKIARREERFAQG 184
>tr|Q7XY20|Q7XY20_WHEAT Ribosomal protein L19 OS=Triticum aestivum PE=2 SV=1 Length = 209
Score = 249 bits (635), Expect(2) = 9e-68 Identities = 127/168 (75%), Positives = 135/168 (80%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MVSLKLQKRLA+SVLKCGK KVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKP KIHS Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKRRGTREARLP+K+ EAKKIDKHMY Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS 525 HDMY+KVKGN+FKNKRVLMESIHKSKAEKAREKTLSDQFEA+RAK K+ Sbjct: 121 HDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKA 168
Score = 31.6 bits (70), Expect(2) = 9e-68 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = +2
Query: 515 KGKANRERKSARREERLA 568 K KA+RERK ARREERLA Sbjct: 165 KSKASRERKIARREERLA 182
>tr|A9TI47|A9TI47_PHYPA Ribosomal protein L19 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_222528 PE=3 SV=1 Length = 208
Score = 254 bits (650), Expect = 2e-66 Identities = 135/185 (72%), Positives = 141/185 (76%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MVSLKLQKRLAASVLKCG+RKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKP KIHS Sbjct: 1 MVSLKLQKRLAASVLKCGERKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPQKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKRRGTREARLP+KV +AKKIDKHMY Sbjct: 61 ARARRALEAKRKGRHSGYGKRRGTREARLPTKVLWLRRMRVLRRLLRKYRDAKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS*QGAKKCQEGRA 561 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAK K+ + K + Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKNKATRERKIARREER 180
Query: 562 LGTGI 576 GI Sbjct: 181 QAQGI 185
>tr|A9T000|A9T000_PHYPA Ribosomal protein L19 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_190288 PE=3 SV=1 Length = 208
Score = 254 bits (650), Expect = 2e-66 Identities = 135/185 (72%), Positives = 141/185 (76%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MVSLKLQKRLAASVLKCG+RKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKP KIHS Sbjct: 1 MVSLKLQKRLAASVLKCGERKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPQKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKRRGTREARLP+KV +AKKIDKHMY Sbjct: 61 ARARRALEAKRKGRHSGYGKRRGTREARLPTKVLWLRRMRVLRRLLRKYRDAKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS*QGAKKCQEGRA 561 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAK K+ + K + Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKNKATRERKIARREER 180
Query: 562 LGTGI 576 GI Sbjct: 181 QAQGI 185
>tr|A9S5S6|A9S5S6_PHYPA Ribosomal protein L19 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_162995 PE=3 SV=1 Length = 208
Score = 254 bits (650), Expect = 2e-66 Identities = 135/185 (72%), Positives = 141/185 (76%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MVSLKLQKRLAASVLKCG+RKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKP KIHS Sbjct: 1 MVSLKLQKRLAASVLKCGERKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPQKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKRRGTREARLP+KV +AKKIDKHMY Sbjct: 61 ARARRALEAKRKGRHSGYGKRRGTREARLPTKVLWLRRMRVLRRLLRKYRDAKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS*QGAKKCQEGRA 561 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAK K+ + K + Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKNKATRERKIARREER 180
Query: 562 LGTGI 576 GI Sbjct: 181 QAQGI 185
>tr|A9SUU6|A9SUU6_PHYPA Ribosomal protein L19 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_166677 PE=3 SV=1 Length = 208
Score = 254 bits (648), Expect = 3e-66 Identities = 134/185 (72%), Positives = 141/185 (76%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MVS+KLQKRLAASVLKCG+RKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKP KIHS Sbjct: 1 MVSIKLQKRLAASVLKCGERKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPQKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKRRGTREARLP+KV +AKKIDKHMY Sbjct: 61 ARARRALEAKRKGRHSGYGKRRGTREARLPTKVLWLRRMRVLRRLLRKYRDAKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS*QGAKKCQEGRA 561 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAK K+ + K + Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKNKASRERKIARREER 180
Query: 562 LGTGI 576 GI Sbjct: 181 QAQGI 185
>tr|Q8W101|Q8W101_ARATH Ribosomal protein L19 OS=Arabidopsis thaliana PE=2 SV=1 Length = 214
Score = 243 bits (619), Expect(2) = 4e-66 Identities = 124/168 (73%), Positives = 133/168 (79%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MVSLKLQKRLAASV+KCGK KVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHS Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKR+ TREARLP+KV E KKIDKHMY Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKATREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS 525 HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEA+RAK K+ Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKA 168
Score = 32.3 bits (72), Expect(2) = 4e-66 Identities = 15/19 (78%), Positives = 17/19 (89%) Frame = +2
Query: 515 KGKANRERKSARREERLAQ 571 K KA+RERK ARREERLA+ Sbjct: 165 KNKASRERKHARREERLAK 183
>tr|A9SIX0|A9SIX0_PHYPA Ribosomal protein L19 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_62822 PE=3 SV=1 Length = 208
Score = 253 bits (647), Expect = 4e-66 Identities = 134/185 (72%), Positives = 141/185 (76%) Frame = +1
Query: 22 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 201 MVSLKLQKRLAASVLKCG+RKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKP KIHS Sbjct: 1 MVSLKLQKRLAASVLKCGERKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPQKIHSR 60
Query: 202 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 381 GRHSGYGKRRGTREARLP+KV +AKKIDKHMY Sbjct: 61 ARARRALEAKRKGRHSGYGKRRGTREARLPTKVLWLRRMRVLRRLLRKYRDAKKIDKHMY 120
Query: 382 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKS*QGAKKCQEGRA 561 HDMYMKVKGNVFKNKRVLMESIHK+KAEKAREKTLSDQFEARRAK K+ + K + Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEARRAKNKAIRERKIARREER 180
Query: 562 LGTGI 576 GI Sbjct: 181 QAQGI 185
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