DK953329 |
Clone id |
TST39A01NGRL0017_H19 |
Library |
TST39 |
Length |
634 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_H19. 5' end sequence. |
Accession |
DK953329 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3213Contig1 |
Sequence |
AGACGATCTAGGCAAACAGTTCTATAACGCCGACCAGTTGAAACTTTGAGATCTTCATTA GTTTCTTCTACTCACGGAGAACCGAGCTGCCTGTGCAAACGAAGATGAGCGGACCAGATG CTCTCTTCCCGATCCGTAATGCCTTCTACTTAGGAGCCTACCAGGCTTCCATTAACGAAA GTGCCTCTGTCGATGCTCTCTCTGAGGCAGAGGTGCTTGAGCGGGATTGCGTTGTTTATC GCTCATACATTGCCCTCGGGAGCTACCAGCTTGTCATCAATGAGATCAACGACTCTGCAC CGACTTCACTTCAGGCAGTGAAGTTGCTGGCCAAGTATCTGGGAGAGAAGGAGAGAAGAG AAGAAACACTGTCGCATCTTAAAGAGTGGCTTGCTGATCCTGCCTTGGCAAGTAACCCAA TCCTGCAGCTTGTTGGTGGGACTGTATATGTGCACGAGCAAGATTATAATGAAGCCCTGA AATATACACACGGTGGACAAACGTTAGAGCTGTGTGCGTTGAATGTACAAATATACCTGA AAATGTTCAGGAATGATCATGCCGAGAAACAGTTGAAGTCAATGCAACATATTGATGAGG ATCATACTCTAACACAGCTTGCCAATGCTTGGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SA78 |
Definition |
sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1 OS=Arabidopsis thaliana |
Align length |
176 |
Score (bit) |
235.0 |
E-value |
1.0e-61 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NNT4 |
Definition |
tr|A9NNT4|A9NNT4_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
176 |
Score (bit) |
259.0 |
E-value |
7.0e-68 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953329|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_H19, 5' (634 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NNT4|A9NNT4_PICSI Putative uncharacterized protein OS=Picea... 259 7e-68 tr|A9RK76|A9RK76_PHYPA Predicted protein OS=Physcomitrella paten... 244 3e-63 tr|A9S7L5|A9S7L5_PHYPA Predicted protein OS=Physcomitrella paten... 240 4e-62 tr|A9TB18|A9TB18_PHYPA Predicted protein OS=Physcomitrella paten... 239 1e-61 tr|A7Q4U5|A7Q4U5_VITVI Chromosome chr10 scaffold_50, whole genom... 234 2e-60 tr|Q9M639|Q9M639_MAIZE Putative uncharacterized protein OS=Zea m... 227 4e-58 tr|B4FAK1|B4FAK1_MAIZE Putative uncharacterized protein OS=Zea m... 227 4e-58 tr|B6SZK9|B6SZK9_MAIZE Coatomer subunit epsilon OS=Zea mays PE=2... 227 5e-58 tr|A9PF16|A9PF16_POPTR Putative uncharacterized protein OS=Popul... 225 2e-57 tr|Q5QQ34|Q5QQ34_MEDTR Coatomer epsilon subunit OS=Medicago trun... 224 4e-57 tr|B8AU46|B8AU46_ORYSI Putative uncharacterized protein OS=Oryza... 222 1e-56 tr|B7E599|B7E599_ORYSJ cDNA clone:001-030-H03, full insert seque... 222 1e-56 tr|B3TLU5|B3TLU5_ELAGV Protein transporter OS=Elaeis guineensis ... 219 8e-56 tr|Q9MAX8|Q9MAX8_SOYBN Epsilon1-COP OS=Glycine max GN=cope1 PE=2... 216 7e-55 tr|Q9MAX7|Q9MAX7_SOYBN Epsilon2-COP (Fragment) OS=Glycine max GN... 213 1e-53 tr|B4FI99|B4FI99_MAIZE Putative uncharacterized protein OS=Zea m... 211 3e-53 tr|A8IWB5|A8IWB5_CHLRE Epsilon-cop OS=Chlamydomonas reinhardtii ... 197 6e-49 tr|A5B6P3|A5B6P3_VITVI Putative uncharacterized protein OS=Vitis... 174 4e-42 tr|Q1H8R8|Q1H8R8_CHERU Putative coatomer protein, epsilon subuni... 155 1e-36 tr|A7SPR7|A7SPR7_NEMVE Predicted protein OS=Nematostella vectens... 142 2e-32 tr|Q4T9R0|Q4T9R0_TETNG Chromosome undetermined SCAF7507, whole g... 141 3e-32 tr|B6PDN3|B6PDN3_BRAFL Putative uncharacterized protein OS=Branc... 141 4e-32 tr|Q7Z4Z1|Q7Z4Z1_HUMAN Epsilon-COP OS=Homo sapiens PE=2 SV=1 141 4e-32 tr|Q6IBB8|Q6IBB8_HUMAN COPE protein OS=Homo sapiens GN=COPE PE=2... 141 4e-32 tr|Q53HJ6|Q53HJ6_HUMAN Epsilon subunit of coatomer protein compl... 141 4e-32 tr|A6NE29|A6NE29_HUMAN Coatomer protein complex, subunit epsilon... 141 4e-32 tr|B7QH49|B7QH49_IXOSC Vesicle coat complex COPI, epsilon subuni... 140 6e-32 tr|Q9UGP6|Q9UGP6_HUMAN Epsilon COP OS=Homo sapiens PE=2 SV=1 140 6e-32 tr|Q9D1J2|Q9D1J2_MOUSE Putative uncharacterized protein OS=Mus m... 138 3e-31 tr|Q5U3E8|Q5U3E8_DANRE Zgc:103652 OS=Danio rerio GN=zgc:103652 P... 137 4e-31
>tr|A9NNT4|A9NNT4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 289
Score = 259 bits (663), Expect = 7e-68 Identities = 129/176 (73%), Positives = 149/176 (84%) Frame = +3
Query: 105 MSGPDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINE 284 MSGPDALF +RN FYLGAYQA+INES V L+E E +ERDC+VYRSYIA+GSYQLVI+E Sbjct: 1 MSGPDALFSLRNNFYLGAYQAAINES-DVHGLTEEESIERDCLVYRSYIAIGSYQLVISE 59
Query: 285 INDSAPTSLQAVKLLAKYLGEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQD 464 INDSAPT LQAVKLLA YL E +E LS LKEWL+D +++NP+L+L+ GT+YVHEQD Sbjct: 60 INDSAPTPLQAVKLLAMYLAGPEYKETALSSLKEWLSDTVISNNPVLKLIAGTIYVHEQD 119
Query: 465 YNEALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 YNEALK+TH G TLEL ALN+QIYLKM R+D+AEKQLK MQ IDEDHTL QLANAW Sbjct: 120 YNEALKHTHSGGTLELYALNIQIYLKMNRSDYAEKQLKLMQQIDEDHTLAQLANAW 175
>tr|A9RK76|A9RK76_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_175776 PE=4 SV=1 Length = 289
Score = 244 bits (623), Expect = 3e-63 Identities = 121/176 (68%), Positives = 146/176 (82%) Frame = +3
Query: 105 MSGPDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINE 284 MSGPD LFP+RN FYLGA+QA+INE +V LS+A+ +E+D VYRSYIALG +QLVI+E Sbjct: 1 MSGPDVLFPLRNNFYLGAFQAAINEG-TVRNLSDADAVEKDSFVYRSYIALGQHQLVIDE 59
Query: 285 INDSAPTSLQAVKLLAKYLGEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQD 464 IND+APT+LQAVKLLA YL ++++ LS L EWL+D A+ASNP L L+ G ++ HEQ+ Sbjct: 60 INDAAPTALQAVKLLALYLSGGAQKDKALSGLSEWLSDAAVASNPTLLLIAGMIHTHEQN 119
Query: 465 YNEALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 YNEALKYTH G TL+LCALN+QIYLKM R D+AEKQLK MQ IDEDHTLTQLANAW Sbjct: 120 YNEALKYTHVGGTLDLCALNIQIYLKMHRTDYAEKQLKIMQQIDEDHTLTQLANAW 175
>tr|A9S7L5|A9S7L5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_209440 PE=4 SV=1 Length = 289
Score = 240 bits (613), Expect = 4e-62 Identities = 121/176 (68%), Positives = 144/176 (81%) Frame = +3
Query: 105 MSGPDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINE 284 MSGPD LFP+RN FYLGA+QA+INES +V LS+A+ +E+D VYRSYIALG YQLVI+E Sbjct: 1 MSGPDVLFPLRNNFYLGAFQAAINES-NVRNLSDADAVEKDSFVYRSYIALGQYQLVIDE 59
Query: 285 INDSAPTSLQAVKLLAKYLGEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQD 464 IND+AP +LQAVKLLA YL ++E+ LS L EWL+D ++SNP L L+ G +Y HEQ+ Sbjct: 60 INDAAPVALQAVKLLALYLSGGAQKEKALSSLSEWLSDTTVSSNPTLLLIAGMIYTHEQN 119
Query: 465 YNEALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 YNEALK+TH G TL+L ALNVQIYLKM R D+AEKQLK MQ IDEDHTLTQLANAW Sbjct: 120 YNEALKHTHVGGTLDLSALNVQIYLKMHRADYAEKQLKIMQQIDEDHTLTQLANAW 175
>tr|A9TB18|A9TB18_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_169035 PE=4 SV=1 Length = 289
Score = 239 bits (609), Expect = 1e-61 Identities = 119/176 (67%), Positives = 145/176 (82%) Frame = +3
Query: 105 MSGPDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINE 284 MSGPD LFP+RN FYLGA+QA+INES +V L +++ +E+D VYRSYIALG +QLVI+E Sbjct: 1 MSGPDVLFPLRNNFYLGAFQAAINES-NVRGLGDSDAVEKDSFVYRSYIALGQHQLVIDE 59
Query: 285 INDSAPTSLQAVKLLAKYLGEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQD 464 I+D+APT+LQAVKLLA YL ++++ LS L EWL+D A++SNP L L+ G + HEQ+ Sbjct: 60 ISDAAPTALQAVKLLALYLSGGAQKDKALSGLSEWLSDSAVSSNPTLLLIAGMINTHEQN 119
Query: 465 YNEALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 YNEALKYTH G TL+LCALNVQIYLKM R D+AEKQLK MQ IDEDHTLTQLANAW Sbjct: 120 YNEALKYTHVGGTLDLCALNVQIYLKMHRPDYAEKQLKIMQQIDEDHTLTQLANAW 175
>tr|A7Q4U5|A7Q4U5_VITVI Chromosome chr10 scaffold_50, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029848001 PE=4 SV=1 Length = 241
Score = 234 bits (598), Expect = 2e-60 Identities = 118/176 (67%), Positives = 143/176 (81%) Frame = +3
Query: 105 MSGPDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINE 284 M+ PD LF +RN F+LGA+QA+IN S + LS + +ERDC+V+RSYIALGSYQLVINE Sbjct: 1 MAAPDLLFGLRNNFFLGAFQAAINNS-DIPNLSPEDSIERDCLVHRSYIALGSYQLVINE 59
Query: 285 INDSAPTSLQAVKLLAKYLGEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQD 464 I+ SA T LQAVKLLA YL E +E T+S LKE L DPA+ +NPIL+L+ G V++HEQD Sbjct: 60 IDSSAATPLQAVKLLALYLSSPENKESTISSLKELLGDPAIGNNPILRLIAGIVFMHEQD 119
Query: 465 YNEALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 YNEALK+TH G T+EL ALNVQI+LKM R+D+AEKQLK MQ +DEDHTLTQLANAW Sbjct: 120 YNEALKHTHPGGTMELHALNVQIFLKMHRSDYAEKQLKIMQQMDEDHTLTQLANAW 175
>tr|Q9M639|Q9M639_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 287
Score = 227 bits (579), Expect = 4e-58 Identities = 119/177 (67%), Positives = 141/177 (79%), Gaps = 1/177 (0%) Frame = +3
Query: 105 MSGPDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINE 284 M+ PD LF +RN FYLGAYQA+IN S V L ERD +V+RSYIALGSYQLVI+E Sbjct: 1 MASPDLLFNLRNLFYLGAYQAAINNS-DVPGLDADAAAERDAIVFRSYIALGSYQLVISE 59
Query: 285 INDSAPTSLQAVKLLAKYL-GEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQ 461 I+ SA TSLQAVKLLA YL G+KE +S LKEWL+D A+ SNP+L+L+ G V++HEQ Sbjct: 60 IDSSAATSLQAVKLLALYLTGDKEG---AISSLKEWLSDSAIGSNPVLRLIAGIVFMHEQ 116
Query: 462 DYNEALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 DYNEALK+TH G TL+L ALNVQI++KM R+D+AEKQLK MQ IDEDHTLTQLANAW Sbjct: 117 DYNEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAW 173
>tr|B4FAK1|B4FAK1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 231
Score = 227 bits (579), Expect = 4e-58 Identities = 119/177 (67%), Positives = 141/177 (79%), Gaps = 1/177 (0%) Frame = +3
Query: 105 MSGPDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINE 284 M+ PD LF +RN FYLGAYQA+IN S V L ERD +V+RSYIALGSYQLVI+E Sbjct: 1 MASPDLLFNLRNLFYLGAYQAAINNS-DVPGLDADAAAERDAIVFRSYIALGSYQLVISE 59
Query: 285 INDSAPTSLQAVKLLAKYL-GEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQ 461 I+ SA TSLQAVKLLA YL G+KE +S LKEWL+D A+ SNP+L+L+ G V++HEQ Sbjct: 60 IDSSAATSLQAVKLLALYLTGDKEG---AISSLKEWLSDSAIGSNPVLRLIAGIVFMHEQ 116
Query: 462 DYNEALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 DYNEALK+TH G TL+L ALNVQI++KM R+D+AEKQLK MQ IDEDHTLTQLANAW Sbjct: 117 DYNEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAW 173
>tr|B6SZK9|B6SZK9_MAIZE Coatomer subunit epsilon OS=Zea mays PE=2 SV=1 Length = 287
Score = 227 bits (578), Expect = 5e-58 Identities = 118/177 (66%), Positives = 141/177 (79%), Gaps = 1/177 (0%) Frame = +3
Query: 105 MSGPDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINE 284 M+ PD LF +RN FYLGAYQA+IN S V L ERD +V+RSYIALGSYQLVI+E Sbjct: 1 MASPDLLFNLRNLFYLGAYQAAINNS-DVPGLDADAAAERDAIVFRSYIALGSYQLVISE 59
Query: 285 INDSAPTSLQAVKLLAKYL-GEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQ 461 I+ SA TSLQAVKLLA YL G+KE +S LKEWL+D A+ SNP+L+L+ G +++HEQ Sbjct: 60 IDSSAATSLQAVKLLALYLTGDKEG---AISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQ 116
Query: 462 DYNEALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 DYNEALK+TH G TL+L ALNVQI++KM R+D+AEKQLK MQ IDEDHTLTQLANAW Sbjct: 117 DYNEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAW 173
>tr|A9PF16|A9PF16_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 191
Score = 225 bits (573), Expect = 2e-57 Identities = 114/173 (65%), Positives = 140/173 (80%) Frame = +3
Query: 114 PDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINEIND 293 PD LF +RN FYLGAYQA+IN S + LS + +ERD +VYRSYIAL SYQLVI+EI+D Sbjct: 5 PDHLFNLRNNFYLGAYQAAINTS-DLPNLSPDDAVERDSLVYRSYIALASYQLVIHEIDD 63
Query: 294 SAPTSLQAVKLLAKYLGEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQDYNE 473 +A T LQAVKLLA YL E +E T+S LKEWLAD A+A+N IL+L+ G +++HE+DYNE Sbjct: 64 AAATPLQAVKLLALYLSSPENKESTISSLKEWLADSAIANNAILRLIAGIIFMHEEDYNE 123
Query: 474 ALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 ALK+T+ G T+EL ALNVQI+LKM R+D+AEKQL+ MQ IDEDHTLTQLA AW Sbjct: 124 ALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLATAW 176
>tr|Q5QQ34|Q5QQ34_MEDTR Coatomer epsilon subunit OS=Medicago truncatula GN=cope1 PE=2 SV=1 Length = 289
Score = 224 bits (570), Expect = 4e-57 Identities = 109/176 (61%), Positives = 140/176 (79%) Frame = +3
Query: 105 MSGPDALFPIRNAFYLGAYQASINESASVDALSEAEVLERDCVVYRSYIALGSYQLVINE 284 M+ PD LF +RN FYLGAYQA+IN S+ V LS +++ERD +V+R YI+LG Q VI+E Sbjct: 1 MATPDHLFNLRNNFYLGAYQAAIN-SSEVSNLSPDDIIERDTLVFRCYISLGQLQFVISE 59
Query: 285 INDSAPTSLQAVKLLAKYLGEKERREETLSHLKEWLADPALASNPILQLVGGTVYVHEQD 464 INDSAPT LQAVKLLA Y + +E ++ +KEWLADPA+ +N L+LV G +++HEQD Sbjct: 60 INDSAPTPLQAVKLLALYFSSPDSKESAIASIKEWLADPAIGNNATLRLVAGIIFLHEQD 119
Query: 465 YNEALKYTHGGQTLELCALNVQIYLKMFRNDHAEKQLKSMQHIDEDHTLTQLANAW 632 +NEALKYT+ G T+EL ALNVQI++KM R+D+AE+QL+ MQ IDEDHTLTQLANAW Sbjct: 120 FNEALKYTNAGGTMELTALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAW 175
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