DK953366 |
Clone id |
TST39A01NGRL0017_J08 |
Library |
TST39 |
Length |
537 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_J08. 5' end sequence. |
Accession |
DK953366 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL305Contig1 |
Sequence |
GGGGAATTAGGGAAGGTACACAGGGCTACAATCACATTTCTGCAAGCAGCGAAAGCAGAG CGAAGCGAAGAATCAAAACATTGCAGAGCAACCTTGGGTGCTGTCGCCATGGCCTCCTCA TCTGCGCGCAACGGCGTTTCTCGCCTTTCGCACCTTCTCAGTAAGGCCGCACCTGTCGCC GCCCCCTCCCTGCAGTCCCCGTCCTGGCAATGCCCCGGCCTCGCTCCCGGTGAATTGGCA CCCTTTGGAACCAGAATGGCATCTTCTCAAATTGTAAGAAACAGAATGAAGAGTGTAAAA AGTATTCAGAAGATTACCAAGGCCATGAAGATGGTTGCAGCATCTAAGCTTAGAGGAGTC CAAACCAAGACAGAAAATTCCAGAGGGTTTTGGCAGCCTTTTGTAGCTTTAATGGGTGAT CATCCTGACATAGATACCAAAAAGAACATAGTGCTTACCATTTCAAGCGACAGGGGGCTT TGTGGTGGCATCAACTCAACGGTCGTGAAACTAAGCAAAGGAATATTCAAACTGCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26360 |
Definition |
sp|P26360|ATPG3_IPOBA ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas |
Align length |
150 |
Score (bit) |
150.0 |
E-value |
4.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953366|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_J08, 5' (537 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26360|ATPG3_IPOBA ATP synthase subunit gamma, mitochondrial ... 150 4e-36 sp|Q96250|ATPG3_ARATH ATP synthase subunit gamma, mitochondrial ... 149 8e-36 sp|Q2YCA4|ATPG_NITMU ATP synthase gamma chain OS=Nitrosospira mu... 70 5e-12 sp|Q91VR2|ATPG_MOUSE ATP synthase subunit gamma, mitochondrial O... 70 7e-12 sp|P05631|ATPG_BOVIN ATP synthase subunit gamma, mitochondrial O... 70 9e-12 sp|Q162S8|ATPG_ROSDO ATP synthase gamma chain OS=Roseobacter den... 69 1e-11 sp|Q0AJB1|ATPG_NITEC ATP synthase gamma chain OS=Nitrosomonas eu... 69 1e-11 sp|Q5FH34|ATPG_EHRRG ATP synthase gamma chain OS=Ehrlichia rumin... 69 2e-11 sp|Q6LLG7|ATPG1_PHOPR ATP synthase gamma chain 1 OS=Photobacteri... 69 2e-11 sp|Q5E1N6|ATPG_VIBF1 ATP synthase gamma chain OS=Vibrio fischeri... 68 2e-11 sp|Q0SGP8|ATPG_RHOSR ATP synthase gamma chain OS=Rhodococcus sp.... 68 2e-11 sp|Q5RBS9|ATPG_PONAB ATP synthase subunit gamma, mitochondrial O... 68 2e-11 sp|Q82XP9|ATPG_NITEU ATP synthase gamma chain OS=Nitrosomonas eu... 68 2e-11 sp|Q4R5B0|ATPG_MACFA ATP synthase subunit gamma, mitochondrial O... 68 2e-11 sp|P36542|ATPG_HUMAN ATP synthase subunit gamma, mitochondrial O... 68 2e-11 sp|Q0A4M7|ATPG_ALHEH ATP synthase gamma chain OS=Alkalilimnicola... 68 2e-11 sp|Q7MGH9|ATPG_VIBVY ATP synthase gamma chain OS=Vibrio vulnific... 68 3e-11 sp|Q8DDG9|ATPG_VIBVU ATP synthase gamma chain OS=Vibrio vulnific... 68 3e-11 sp|Q87KA7|ATPG_VIBPA ATP synthase gamma chain OS=Vibrio parahaem... 68 3e-11 sp|P12990|ATPG_VIBAL ATP synthase gamma chain OS=Vibrio alginoly... 68 3e-11 sp|Q0AKV9|ATPG_MARMM ATP synthase gamma chain OS=Maricaulis mari... 68 3e-11 sp|A5FZ53|ATPG_ACICJ ATP synthase gamma chain OS=Acidiphilium cr... 68 3e-11 sp|A7HT51|ATPG_PARL1 ATP synthase gamma chain OS=Parvibaculum la... 67 4e-11 sp|Q2VZN1|ATPG_MAGMM ATP synthase gamma chain OS=Magnetospirillu... 67 4e-11 sp|A1BJF4|ATPG_CHLPD ATP synthase gamma chain OS=Chlorobium phae... 67 4e-11 sp|Q9KNH4|ATPG_VIBCH ATP synthase gamma chain OS=Vibrio cholerae... 67 6e-11 sp|A5F458|ATPG_VIBC3 ATP synthase gamma chain OS=Vibrio cholerae... 67 6e-11 sp|Q9L6B6|ATPG_PASMU ATP synthase gamma chain OS=Pasteurella mul... 67 6e-11 sp|Q2N8Z4|ATPG_ERYLH ATP synthase gamma chain OS=Erythrobacter l... 67 6e-11 sp|P35435|ATPG_RAT ATP synthase subunit gamma, mitochondrial OS=... 67 7e-11
>sp|P26360|ATPG3_IPOBA ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2 Length = 326
Score = 150 bits (379), Expect = 4e-36 Identities = 85/150 (56%), Positives = 102/150 (68%), Gaps = 8/150 (5%) Frame = +1
Query: 109 MASSSARNGVSRLSHLLSKAAPVAAP--------SLQSPSWQCPGLAPGELAPFGTRMAS 264 MA ++ R RL+ AAP +P SL SPS E+ G R S Sbjct: 1 MAMAALRREGRRLA-----AAPFTSPTPLNALRSSLVSPS--------EEIGLSGVRSIS 47
Query: 265 SQIVRNRMKSVKSIQKITKAMKMVAASKLRGVQTKTENSRGFWQPFVALMGDHPDIDTKK 444 +Q+VRNRMKSVK+IQKITKAMKMVAASKLR +QT+ ENSRG WQPF AL+GD P +D KK Sbjct: 48 TQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKK 107
Query: 445 NIVLTISSDRGLCGGINSTVVKLSKGIFKL 534 N+++TISSD+GLCGGINST VK S+ I KL Sbjct: 108 NVIITISSDKGLCGGINSTSVKTSRNIHKL 137
>sp|Q96250|ATPG3_ARATH ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1 Length = 325
Score = 149 bits (376), Expect = 8e-36 Identities = 78/123 (63%), Positives = 94/123 (76%) Frame = +1
Query: 166 AAPVAAPSLQSPSWQCPGLAPGELAPFGTRMASSQIVRNRMKSVKSIQKITKAMKMVAAS 345 A P+AA S Q GL G R S+Q+VRNRMKSVK+IQKITKAMKMVAAS Sbjct: 19 ARPIAAIRSPLSSDQEEGL-------LGVRSISTQVVRNRMKSVKNIQKITKAMKMVAAS 71
Query: 346 KLRGVQTKTENSRGFWQPFVALMGDHPDIDTKKNIVLTISSDRGLCGGINSTVVKLSKGI 525 KLR VQ + ENSRG WQPF AL+GD+P ID KK++V+T+SSD+GLCGGINSTVVK+S+ + Sbjct: 72 KLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRAL 131
Query: 526 FKL 534 +KL Sbjct: 132 YKL 134
>sp|Q2YCA4|ATPG_NITMU ATP synthase gamma chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=atpG PE=3 SV=1 Length = 293
Score = 70.5 bits (171), Expect = 5e-12 Identities = 39/100 (39%), Positives = 65/100 (65%), Gaps = 13/100 (13%) Frame = +1
Query: 256 MASSQIVRNRMKSVKSIQKITKAMKMVAASKLRGVQTKTENSRGFWQPFVALMGD----- 420 MA S+ +RN++KSVK+ QKIT+AM+MVAASK+R Q + + +R + + + Sbjct: 1 MAGSREIRNKIKSVKNTQKITRAMEMVAASKMRRAQERMKKARPYGEKIRNVAAHMSRAY 60
Query: 421 ----HP---DIDTKKNI-VLTISSDRGLCGGINSTVVKLS 516 HP + DT K I ++ ++SD+GLCGG+N+ V++++ Sbjct: 61 TEYRHPFLIERDTVKRIGIIVVTSDKGLCGGLNTNVLRMA 100
>sp|Q91VR2|ATPG_MOUSE ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1 PE=1 SV=1 Length = 298
Score = 70.1 bits (170), Expect = 7e-12 Identities = 40/92 (43%), Positives = 62/92 (67%), Gaps = 4/92 (4%) Frame = +1
Query: 256 MASSQIVRNRMKSVKSIQKITKAMKMVAASKLRGVQTKTENSRGFWQPFVALMGDHPDI- 432 MA+ + + R+KS+K+IQKITK+MKMVAA+K + + + +R + +AL + DI Sbjct: 25 MATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALY-EKADIK 83
Query: 433 ---DTKKNIVLTISSDRGLCGGINSTVVKLSK 519 D KK++++ +SSDRGLCG I+S+V K K Sbjct: 84 APEDKKKHLIIGVSSDRGLCGAIHSSVAKQMK 115
>sp|P05631|ATPG_BOVIN ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3 Length = 298
Score = 69.7 bits (169), Expect = 9e-12 Identities = 40/92 (43%), Positives = 62/92 (67%), Gaps = 4/92 (4%) Frame = +1
Query: 256 MASSQIVRNRMKSVKSIQKITKAMKMVAASKLRGVQTKTENSRGFWQPFVALMGDHPDI- 432 MA+ + + R+KS+K+IQKITK+MKMVAA+K + + + +R + +AL + DI Sbjct: 25 MATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALY-EKADIK 83
Query: 433 ---DTKKNIVLTISSDRGLCGGINSTVVKLSK 519 D KK++++ +SSDRGLCG I+S+V K K Sbjct: 84 TPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMK 115
>sp|Q162S8|ATPG_ROSDO ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1 Length = 291
Score = 68.9 bits (167), Expect = 1e-11 Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 15/103 (14%) Frame = +1
Query: 256 MASSQIVRNRMKSVKSIQKITKAMKMVAASKLRGVQTKTENSRGFWQPFVALMG------ 417 M S + ++NR++SVKS +KITKAM+MVAA+KLR Q E SR + + F A+M Sbjct: 1 MPSLKDLKNRIESVKSTRKITKAMQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASV 60
Query: 418 ----DHPDI-----DTKKNIVLTISSDRGLCGGINSTVVKLSK 519 P + K +++ ++S+RGLCGG N+ + KL++ Sbjct: 61 GGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLAR 103
>sp|Q0AJB1|ATPG_NITEC ATP synthase gamma chain OS=Nitrosomonas eutropha (strain C91) GN=atpG PE=3 SV=1 Length = 294
Score = 68.9 bits (167), Expect = 1e-11 Identities = 35/98 (35%), Positives = 64/98 (65%), Gaps = 13/98 (13%) Frame = +1
Query: 256 MASSQIVRNRMKSVKSIQKITKAMKMVAASKLRGVQTKTENSRGFWQPF---------VA 408 MASS+ +RN++KS+K+ QKIT+AM+MVAASK+R Q + + +R + + + Sbjct: 1 MASSREIRNKIKSIKNTQKITRAMEMVAASKMRKAQDRMKKARPYGEKIRNVAAHMSKAS 60
Query: 409 LMGDHPDIDTKKNI----VLTISSDRGLCGGINSTVVK 510 + HP + + ++ ++ ++SD+GLCGG+N+ V++ Sbjct: 61 VEYRHPFLIDRNSVKRVGIIVVTSDKGLCGGLNTNVLR 98
>sp|Q5FH34|ATPG_EHRRG ATP synthase gamma chain OS=Ehrlichia ruminantium (strain Gardel) GN=atpG PE=3 SV=1 Length = 283
Score = 68.6 bits (166), Expect = 2e-11 Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 9/103 (8%) Frame = +1
Query: 256 MASSQIVRNRMKSVKSIQKITKAMKMVAASKLRGVQTKTENSRGFWQPF--------VAL 411 MA+ + + RMKSVKSIQK TK M+M++A+KLR VQ + N+R V+ Sbjct: 1 MANLKALFLRMKSVKSIQKTTKVMQMISAAKLRQVQQRLNNARMHMLELSKIIDTNVVSK 60
Query: 412 MGDHPDIDTKKNIVLTI-SSDRGLCGGINSTVVKLSKGIFKLL 537 + D KK+I+L I SSDRGLCG N+ +VK +K + L Sbjct: 61 NNECTDRHNKKDILLVIMSSDRGLCGNFNNMIVKFAKSYIEEL 103
>sp|Q6LLG7|ATPG1_PHOPR ATP synthase gamma chain 1 OS=Photobacterium profundum GN=atpG1 PE=3 SV=1 Length = 288
Score = 68.6 bits (166), Expect = 2e-11 Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 12/97 (12%) Frame = +1
Query: 256 MASSQIVRNRMKSVKSIQKITKAMKMVAASKLRGVQTKTENSRGFWQPFVALMG------ 417 MAS++ +RN++ SV++ QKITKAM+MVAASK+R Q E+SR + + ++G Sbjct: 1 MASAKEIRNKIGSVQNTQKITKAMEMVAASKMRKTQDAMESSRPYAETMRKVIGHIALGN 60
Query: 418 ---DHPDI---DTKKNIVLTISSDRGLCGGINSTVVK 510 HP + + K+ + +SSDRGLCGG+N + K Sbjct: 61 LEYKHPYLEVREAKRVGYIIVSSDRGLCGGLNINLFK 97
>sp|Q5E1N6|ATPG_VIBF1 ATP synthase gamma chain OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=atpG PE=3 SV=1 Length = 288
Score = 68.2 bits (165), Expect = 2e-11 Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 12/97 (12%) Frame = +1
Query: 256 MASSQIVRNRMKSVKSIQKITKAMKMVAASKLRGVQTKTENSRGFWQPFVALMGD----- 420 MA ++ +RN++ SVKS QKITKAM+MVAASK+R Q E SR + ++G Sbjct: 1 MAGAKEIRNKIGSVKSTQKITKAMEMVAASKMRRSQESMEASRPYADTMRKVIGHLALGN 60
Query: 421 ----HP---DIDTKKNIVLTISSDRGLCGGINSTVVK 510 HP + + K+ + ISSDRGLCGG+N + K Sbjct: 61 LEYRHPYLEEREAKRVGYIVISSDRGLCGGLNINLFK 97
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q7G3Y4 |
Definition |
tr|Q7G3Y4|Q7G3Y4_ORYSJ ATP synthase gamma chain OS=Oryza sativa subsp. japonica |
Align length |
142 |
Score (bit) |
154.0 |
E-value |
2.0e-36 |
Report |
|