DK953375 |
Clone id |
TST39A01NGRL0017_J17 |
Library |
TST39 |
Length |
571 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_J17. 5' end sequence. |
Accession |
DK953375 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1668Contig1 |
Sequence |
AATTTCTGCTCCAGCGTGCGGATCCAGCAAGAAGAGCCTCCTCTTAAGCGTCTAATTGTA ACCGGAACAGCTTCGATCCCTCTCTTTCTCTGCAGATCATGACCATCATGCACGTACTTT CCCCTCAGGGCGCAAAAGCTTCTTAAACAGTGCTTCCCACCCTTCAGCACAGCGTGCCTC CATCGACTACCGCTCCAGAATGGTTGTCTTAGCTGCCTCCATCATTACCAAAACGGGCAA AGCCCTGGTATCACGTCAATTCGTGGAAATGACAAGGATAAGGATCGAGGGTCTCTTAGC TGCTTTCCCAAAGCTTGTGGGGACTGGCAAACAGCATACTTATGTTGAAACAGAGAATGT TCGATATGTTTATCAACCTATTGAGCTGCTATACCTTCTGTTGGTCACAAACAGGCAAAG CAACATTTTAGAAGATTTGGAAATGTTGAGACTTTTATCAAAAATTGTTCCTGAATACTG CCCTAGTCTAGACGAAGATGGCATTTGCAAGGTGGCATTTGAACTGATATTTGCTTTCGA TGAAGCCATTTCACTTGGCCACAAGGAGAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0DJA0 |
Definition |
sp|Q0DJA0|COPD1_ORYSJ Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica |
Align length |
124 |
Score (bit) |
218.0 |
E-value |
2.0e-56 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9M640 |
Definition |
tr|Q9M640|Q9M640_MAIZE Delta-COP OS=Zea mays |
Align length |
124 |
Score (bit) |
218.0 |
E-value |
1.0e-55 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953375|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_J17, 5' (571 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9M640|Q9M640_MAIZE Delta-COP OS=Zea mays PE=2 SV=1 218 1e-55 tr|A3B2G5|A3B2G5_ORYSJ Putative uncharacterized protein OS=Oryza... 218 1e-55 tr|B6TDR8|B6TDR8_MAIZE Coatomer subunit delta OS=Zea mays PE=2 SV=1 217 4e-55 tr|B4G0V4|B4G0V4_MAIZE Putative uncharacterized protein OS=Zea m... 217 4e-55 tr|A5B542|A5B542_VITVI Putative uncharacterized protein OS=Vitis... 215 1e-54 tr|B8AWD9|B8AWD9_ORYSI Putative uncharacterized protein OS=Oryza... 215 2e-54 tr|B8LLU4|B8LLU4_PICSI Putative uncharacterized protein OS=Picea... 213 5e-54 tr|A7P2Q5|A7P2Q5_VITVI Chromosome chr1 scaffold_5, whole genome ... 213 5e-54 tr|B7EGT8|B7EGT8_ORYSJ cDNA clone:J023027K10, full insert sequen... 212 1e-53 tr|A9RMY5|A9RMY5_PHYPA Predicted protein OS=Physcomitrella paten... 209 1e-52 tr|A9RGU9|A9RGU9_PHYPA Predicted protein OS=Physcomitrella paten... 207 3e-52 tr|A8I901|A8I901_CHLRE Delta-cop OS=Chlamydomonas reinhardtii GN... 201 2e-50 tr|Q94IK3|Q94IK3_SCHDU Coatomer delta subunit OS=Scherffelia dub... 187 3e-46 tr|Q91W48|Q91W48_MOUSE Archain 1 OS=Mus musculus GN=Arcn1 PE=2 SV=1 180 4e-44 tr|Q8C0G7|Q8C0G7_MOUSE Putative uncharacterized protein OS=Mus m... 180 4e-44 tr|Q6P1Q5|Q6P1Q5_HUMAN ARCN1 protein OS=Homo sapiens GN=ARCN1 PE... 180 4e-44 tr|B0YIW5|B0YIW5_HUMAN Coatomer subunit delta variant 1 (Archain... 180 4e-44 tr|Q7ZW27|Q7ZW27_DANRE Archain 1 OS=Danio rerio GN=arcn1 PE=2 SV=1 180 6e-44 tr|Q7T0U9|Q7T0U9_XENLA Arcn1 protein OS=Xenopus laevis GN=arcn1 ... 179 1e-43 tr|Q28E96|Q28E96_XENTR Archain 1 (Archain) OS=Xenopus tropicalis... 179 1e-43 tr|B6L4A9|B6L4A9_BRAFL Putative uncharacterized protein OS=Branc... 178 2e-43 tr|B0YIW6|B0YIW6_HUMAN Coatomer subunit delta variant 2 (Archain... 178 2e-43 tr|Q7ZU89|Q7ZU89_DANRE Archain 1 like OS=Danio rerio GN=arcn1l P... 177 3e-43 tr|B5X2H8|B5X2H8_SALSA Coatomer subunit delta OS=Salmo salar GN=... 177 3e-43 tr|Q3U4S9|Q3U4S9_MOUSE Putative uncharacterized protein OS=Mus m... 177 3e-43 tr|Q6MZV5|Q6MZV5_HUMAN Putative uncharacterized protein DKFZp686... 177 5e-43 tr|Q4RYQ9|Q4RYQ9_TETNG Chromosome 16 SCAF14974, whole genome sho... 176 8e-43 tr|Q16JS6|Q16JS6_AEDAE Coatomer delta subunit OS=Aedes aegypti G... 175 1e-42 tr|B0XDC3|B0XDC3_CULQU Coatomer subunit delta OS=Culex quinquefa... 174 2e-42 tr|B4JWZ1|B4JWZ1_DROGR GH17851 (Fragment) OS=Drosophila grimshaw... 174 3e-42
>tr|Q9M640|Q9M640_MAIZE Delta-COP OS=Zea mays PE=2 SV=1 Length = 523
Score = 218 bits (556), Expect = 1e-55 Identities = 109/124 (87%), Positives = 120/124 (96%) Frame = +2
Query: 200 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 379 MVVLAASI++K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIVSKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 380 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 559 IE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDEDGICK AFE+IFAFDEAISLG Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEDGICKTAFEIIFAFDEAISLG 120
Query: 560 HKEN 571 +KEN Sbjct: 121 NKEN 124
>tr|A3B2G5|A3B2G5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017237 PE=4 SV=1 Length = 1330
Score = 218 bits (556), Expect = 1e-55 Identities = 109/125 (87%), Positives = 121/125 (96%) Frame = +2
Query: 197 RMVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ 376 +MVVLAASII+K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ Sbjct: 285 KMVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ 344
Query: 377 PIELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISL 556 PIE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+G+CK AFELIFAFDEAISL Sbjct: 345 PIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISL 404
Query: 557 GHKEN 571 G+KEN Sbjct: 405 GNKEN 409
Score = 217 bits (553), Expect = 3e-55 Identities = 110/135 (81%), Positives = 124/135 (91%) Frame = +2
Query: 167 AQRASIDYRSRMVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYV 346 +QRA + + VVLAASII+K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYV Sbjct: 796 SQRARLVAANYQVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYV 855
Query: 347 ETENVRYVYQPIELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFEL 526 ETENVRYVYQPIE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+G+CK AFEL Sbjct: 856 ETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFEL 915
Query: 527 IFAFDEAISLGHKEN 571 IFAFDEAI LG+KEN Sbjct: 916 IFAFDEAICLGNKEN 930
>tr|B6TDR8|B6TDR8_MAIZE Coatomer subunit delta OS=Zea mays PE=2 SV=1 Length = 517
Score = 217 bits (552), Expect = 4e-55 Identities = 108/124 (87%), Positives = 120/124 (96%) Frame = +2
Query: 200 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 379 MVVLAASI++K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIVSKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 380 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 559 IE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+GICK AFE+IFAFDEAISLG Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGICKTAFEIIFAFDEAISLG 120
Query: 560 HKEN 571 +KEN Sbjct: 121 NKEN 124
>tr|B4G0V4|B4G0V4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 516
Score = 217 bits (552), Expect = 4e-55 Identities = 108/124 (87%), Positives = 120/124 (96%) Frame = +2
Query: 200 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 379 MVVLAASI++K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIVSKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 380 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 559 IE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+GICK AFE+IFAFDEAISLG Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGICKTAFEIIFAFDEAISLG 120
Query: 560 HKEN 571 +KEN Sbjct: 121 NKEN 124
>tr|A5B542|A5B542_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008875 PE=4 SV=1 Length = 531
Score = 215 bits (548), Expect = 1e-54 Identities = 108/124 (87%), Positives = 116/124 (93%) Frame = +2
Query: 200 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 379 MVVLAASI++K+GK LVSRQFV+MTRIRIE LLAAFPKLVGTGKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIVSKSGKVLVSRQFVDMTRIRIEALLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 380 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 559 IE LYLLLVTN+QSNILEDLE LRLLSK+VPEY SLDE+G+CK AFELIFAFDE ISLG Sbjct: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSVSLDEEGVCKTAFELIFAFDEVISLG 120
Query: 560 HKEN 571 HKEN Sbjct: 121 HKEN 124
>tr|B8AWD9|B8AWD9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19411 PE=4 SV=1 Length = 607
Score = 215 bits (547), Expect = 2e-54 Identities = 108/134 (80%), Positives = 123/134 (91%) Frame = +2
Query: 170 QRASIDYRSRMVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVE 349 +R + + +VVLAASII+K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVE Sbjct: 75 RRDILTFALLLVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVE 134
Query: 350 TENVRYVYQPIELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELI 529 TENVRYVYQPIE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+G+CK AFELI Sbjct: 135 TENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELI 194
Query: 530 FAFDEAISLGHKEN 571 FAFDEAI LG+KEN Sbjct: 195 FAFDEAICLGNKEN 208
>tr|B8LLU4|B8LLU4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 529
Score = 213 bits (543), Expect = 5e-54 Identities = 103/124 (83%), Positives = 118/124 (95%) Frame = +2
Query: 200 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 379 MVVLAAS+ TKTGKALVSRQFV+MTRIRIEGLLAAFPKLVG+GKQHTY+ETENVRYVYQP Sbjct: 1 MVVLAASVTTKTGKALVSRQFVDMTRIRIEGLLAAFPKLVGSGKQHTYIETENVRYVYQP 60
Query: 380 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 559 +E LYLLL+TN+QSNIL+DL+ LRLLSK+VPEY P LDE+GIC++AFE+IFAFDEAI+LG Sbjct: 61 MESLYLLLITNKQSNILQDLDTLRLLSKLVPEYSPELDEEGICRMAFEIIFAFDEAIALG 120
Query: 560 HKEN 571 H EN Sbjct: 121 HNEN 124
>tr|A7P2Q5|A7P2Q5_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030145001 PE=4 SV=1 Length = 568
Score = 213 bits (543), Expect = 5e-54 Identities = 107/123 (86%), Positives = 115/123 (93%) Frame = +2
Query: 203 VVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPI 382 VVLAASI++K+GK LVSRQFV+MTRIRIE LLAAFPKLVGTGKQHTYVETENVRYVYQPI Sbjct: 39 VVLAASIVSKSGKVLVSRQFVDMTRIRIEALLAAFPKLVGTGKQHTYVETENVRYVYQPI 98
Query: 383 ELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLGH 562 E LYLLLVTN+QSNILEDLE LRLLSK+VPEY SLDE+G+CK AFELIFAFDE ISLGH Sbjct: 99 EALYLLLVTNKQSNILEDLETLRLLSKLVPEYSVSLDEEGVCKTAFELIFAFDEVISLGH 158
Query: 563 KEN 571 KEN Sbjct: 159 KEN 161
>tr|B7EGT8|B7EGT8_ORYSJ cDNA clone:J023027K10, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 518
Score = 212 bits (539), Expect = 1e-53 Identities = 104/124 (83%), Positives = 119/124 (95%) Frame = +2
Query: 200 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 379 MVVLAASII+K+GKALVSRQFV+M+RIRI+GLLAAFPKLVG+GKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60
Query: 380 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 559 IE LYLLL+TN+QSNILEDL+ LRLLSK++PEY PSLDE+G+CK AFEL+FAF EAISLG Sbjct: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLG 120
Query: 560 HKEN 571 +KEN Sbjct: 121 NKEN 124
>tr|A9RMY5|A9RMY5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_204046 PE=4 SV=1 Length = 521
Score = 209 bits (531), Expect = 1e-52 Identities = 103/124 (83%), Positives = 117/124 (94%) Frame = +2
Query: 200 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 379 MVVLAASII+K+GKALVSRQ+V+M+RIRIEGLLA FPKLVG GKQHTYVET+NVRYVYQP Sbjct: 1 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLATFPKLVGIGKQHTYVETDNVRYVYQP 60
Query: 380 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 559 +E LYLLLVTN+QSNILED + L+LLSK+VPEY PSLDE+GICK+AFE+IFAFDE ISLG Sbjct: 61 MESLYLLLVTNKQSNILEDRDTLQLLSKLVPEYVPSLDEEGICKMAFEIIFAFDEVISLG 120
Query: 560 HKEN 571 HKEN Sbjct: 121 HKEN 124
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