DK953386 |
Clone id |
TST39A01NGRL0017_K04 |
Library |
TST39 |
Length |
557 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_K04. 5' end sequence. |
Accession |
DK953386 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL167Contig1 |
Sequence |
AGCACAGTCGCGGGAGGGAGCGGAAGGAGCAAAGCAATCATGAGCAAGCTTCAGAGCGAT GTGCTGAGAGAAGCCATCACGCAGCTCGTGTCGGAATCGAAGGAGAAGAAGAGAAAGTTT GTGGAGACGGTTGAGCTTCAGATTGGGTTGAAGAACTATGACCCTCAAAAGGACAAGCGT TTCAGCGGGTCAGTTAAGCTCGCACACATCCCGCGACCCAAGATGAAAGTGTGCATGCTA GGAGATGCCCAGCATGTGGAAGAGGCGGAGAAGATTGGCCTGGATTGTATGGATGTCGAT GCGCTGAAGAAAATGAATAAGAATAAGAAGCTTGTGAAGAAGCTGGCAAAGAAGTATCAT GCCTTTTTGGCCTCTGAAGCTGTCATTAAGCAGATTCCTCGTCTCCTGGGTCCTGGTTTG AACAAGGCGGGGAAATTCCCTACTCTCGTCTCTCACCAAGAGTCATTGGAGGGGAAATTA AATGAGACGAAGGCCACTGTTAAATTTCAGCTGAAGAAGGTGCTGTGCATGGGTGTTGCT GTGGGAAACCTTGAAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P59230 |
Definition |
sp|P59230|R10A2_ARATH 60S ribosomal protein L10a-2 OS=Arabidopsis thaliana |
Align length |
171 |
Score (bit) |
263.0 |
E-value |
6.0e-70 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NNS9 |
Definition |
tr|A9NNS9|A9NNS9_PICSI Ribosomal protein L1 OS=Picea sitchensis |
Align length |
170 |
Score (bit) |
274.0 |
E-value |
2.0e-72 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953386|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_K04, 5' (557 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NNS9|A9NNS9_PICSI Ribosomal protein L1 OS=Picea sitchensis ... 274 2e-72 tr|B8B9K6|B8B9K6_ORYSI Putative uncharacterized protein OS=Oryza... 271 1e-71 tr|B7F9R7|B7F9R7_ORYSJ cDNA, clone: J090077G21, full insert sequ... 271 1e-71 tr|B7F845|B7F845_ORYSJ cDNA clone:J033125C22, full insert sequen... 271 1e-71 tr|A9NNV9|A9NNV9_PICSI Ribosomal protein L1 OS=Picea sitchensis ... 271 2e-71 tr|Q6ER67|Q6ER67_ORYSJ Ribosomal protein L1 OS=Oryza sativa subs... 268 1e-70 tr|Q5I7L3|Q5I7L3_WHEAT Ribosomal protein L1 OS=Triticum aestivum... 268 1e-70 tr|B3TLQ8|B3TLQ8_ELAGV Ribosomal protein L10a OS=Elaeis guineens... 268 2e-70 tr|B4FN28|B4FN28_MAIZE Putative uncharacterized protein OS=Zea m... 267 2e-70 tr|Q6ZJ04|Q6ZJ04_ORYSJ Ribosomal protein L1 OS=Oryza sativa subs... 267 3e-70 tr|B7FGL9|B7FGL9_MEDTR Putative uncharacterized protein OS=Medic... 266 7e-70 tr|B6UGK6|B6UGK6_MAIZE 60S ribosomal protein L10a-1 OS=Zea mays ... 265 2e-69 tr|B6SIS5|B6SIS5_MAIZE 60S ribosomal protein L10a-1 OS=Zea mays ... 265 2e-69 tr|B6T8K3|B6T8K3_MAIZE 60S ribosomal protein L10a-1 OS=Zea mays ... 264 3e-69 tr|B6T533|B6T533_MAIZE 60S ribosomal protein L10a-1 OS=Zea mays ... 259 5e-68 tr|Q8LR24|Q8LR24_ORYSJ Putative 60S ribosomal protein L10A (Puta... 259 9e-68 tr|A2WX71|A2WX71_ORYSI Putative uncharacterized protein OS=Oryza... 259 9e-68 tr|A9U1W9|A9U1W9_PHYPA Ribosomal protein L1 OS=Physcomitrella pa... 258 2e-67 tr|A9RN42|A9RN42_PHYPA Ribosomal protein L1 OS=Physcomitrella pa... 258 2e-67 tr|A9S177|A9S177_PHYPA Ribosomal protein L1 OS=Physcomitrella pa... 257 3e-67 tr|B8B9N6|B8B9N6_ORYSI Putative uncharacterized protein OS=Oryza... 253 4e-66 tr|B6T8C6|B6T8C6_MAIZE 60S ribosomal protein L10a-1 OS=Zea mays ... 253 5e-66 tr|B4FDA7|B4FDA7_MAIZE 60S ribosomal protein L10a-1 OS=Zea mays ... 253 5e-66 tr|A3A666|A3A666_ORYSJ Putative uncharacterized protein OS=Oryza... 252 8e-66 tr|A3BVQ2|A3BVQ2_ORYSJ Putative uncharacterized protein OS=Oryza... 251 2e-65 tr|B8AGN8|B8AGN8_ORYSI Putative uncharacterized protein OS=Oryza... 250 4e-65 tr|A9PDC6|A9PDC6_POPTR Ribosomal protein L1 OS=Populus trichocar... 249 9e-65 tr|A9PI77|A9PI77_POPTR Ribosomal protein L1 OS=Populus trichocar... 248 1e-64 tr|A9P8Q3|A9P8Q3_POPTR Ribosomal protein L1 OS=Populus trichocar... 248 2e-64 tr|A3BVQ8|A3BVQ8_ORYSJ Putative uncharacterized protein OS=Oryza... 247 3e-64
>tr|A9NNS9|A9NNS9_PICSI Ribosomal protein L1 OS=Picea sitchensis PE=2 SV=1 Length = 216
Score = 274 bits (701), Expect = 2e-72 Identities = 138/170 (81%), Positives = 149/170 (87%) Frame = +1
Query: 40 MSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSVKLAHIPRP 219 MSKLQSDVLREAI+Q++++SKEK+RKF ET+ELQIGLKNYDPQKDKRFSGSVKL HIPRP Sbjct: 1 MSKLQSDVLREAISQVMADSKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 220 KMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 399 KMKVCMLGDAQHVEEAEK+GLD MDV+ YHAFLASEA+IKQIP Sbjct: 61 KMKVCMLGDAQHVEEAEKLGLDYMDVEGLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 400 RLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGN 549 RLLGPGLNKAGKFPTLVSHQESLEGK+NETKATVKFQLKKVLCMGVAVGN Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEGKVNETKATVKFQLKKVLCMGVAVGN 170
>tr|B8B9K6|B8B9K6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30261 PE=4 SV=1 Length = 216
Score = 271 bits (694), Expect = 1e-71 Identities = 139/171 (81%), Positives = 147/171 (85%) Frame = +1
Query: 40 MSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSVKLAHIPRP 219 MSKLQS+VL+EAI+Q+V ESKEK RKF ETVELQIGLKNYDPQKDKRFSGSVKL HIPRP Sbjct: 1 MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 220 KMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 399 KMKVCMLGDAQHVEEAEKIGLD MDV+ YHAFLASEA+IKQIP Sbjct: 61 KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 400 RLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGNL 552 RLLGPGLNKAGKFPTLV+HQESLE K+NETKATVKFQLKKVLCMGVAVGNL Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 171
>tr|B7F9R7|B7F9R7_ORYSJ cDNA, clone: J090077G21, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 216
Score = 271 bits (694), Expect = 1e-71 Identities = 137/170 (80%), Positives = 147/170 (86%) Frame = +1
Query: 40 MSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSVKLAHIPRP 219 MSKLQSD LREAI+Q+ SES+EK+RKFVET+ELQIGLKNYDPQKDKRFSGSVKL HIPRP Sbjct: 1 MSKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 220 KMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 399 KMKVCMLGDAQHVEEAEK+GLD MDV+ YHAFLASEA+IKQIP Sbjct: 61 KMKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 400 RLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGN 549 RLLGPGLNKAGKFPTLV+HQESLE K+NETKATVKFQLKKVLCMGVAVGN Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGN 170
>tr|B7F845|B7F845_ORYSJ cDNA clone:J033125C22, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 216
Score = 271 bits (694), Expect = 1e-71 Identities = 139/171 (81%), Positives = 147/171 (85%) Frame = +1
Query: 40 MSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSVKLAHIPRP 219 MSKLQS+VL+EAI+Q+V ESKEK RKF ETVELQIGLKNYDPQKDKRFSGSVKL HIPRP Sbjct: 1 MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 220 KMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 399 KMKVCMLGDAQHVEEAEKIGLD MDV+ YHAFLASEA+IKQIP Sbjct: 61 KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 400 RLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGNL 552 RLLGPGLNKAGKFPTLV+HQESLE K+NETKATVKFQLKKVLCMGVAVGNL Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 171
>tr|A9NNV9|A9NNV9_PICSI Ribosomal protein L1 OS=Picea sitchensis PE=2 SV=1 Length = 216
Score = 271 bits (693), Expect = 2e-71 Identities = 137/170 (80%), Positives = 145/170 (85%) Frame = +1
Query: 40 MSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSVKLAHIPRP 219 MSKLQSDVLRE ITQ++ ESK+KKRKF ET+ELQIGLKNYDPQKDKRFSGSVKL HIPRP Sbjct: 1 MSKLQSDVLREGITQVMGESKDKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 220 KMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 399 KMKVCMLGDAQH+EEAEKI LD MDV+ YHAFLASEA+IKQIP Sbjct: 61 KMKVCMLGDAQHIEEAEKISLDYMDVEGLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 400 RLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGN 549 RLLGPGLNKAGKFPTLVSHQESLE K+NETKATVKFQLKKVLCMGVAVGN Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGN 170
>tr|Q6ER67|Q6ER67_ORYSJ Ribosomal protein L1 OS=Oryza sativa subsp. japonica GN=OSJNBa0073A18.28 PE=2 SV=1 Length = 216
Score = 268 bits (685), Expect = 1e-70 Identities = 134/170 (78%), Positives = 147/170 (86%) Frame = +1
Query: 40 MSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSVKLAHIPRP 219 MSKLQSD LREAI+Q+ ++S+EK+RKFVET+ELQIGLKNYDPQKDKRFSGSVKL HIPRP Sbjct: 1 MSKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 220 KMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 399 K+KVCMLGDAQHVEEAEK+GLD MDV+ YHAFLASEA+IKQIP Sbjct: 61 KLKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 400 RLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGN 549 RLLGPGLNKAGKFPTLV+HQESLE K+NETKATVKFQLKKVLCMGVAVGN Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGN 170
>tr|Q5I7L3|Q5I7L3_WHEAT Ribosomal protein L1 OS=Triticum aestivum PE=2 SV=1 Length = 216
Score = 268 bits (685), Expect = 1e-70 Identities = 134/171 (78%), Positives = 147/171 (85%) Frame = +1
Query: 40 MSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSVKLAHIPRP 219 MSKLQSD +++AITQ+V E++EKKRKF ETVELQIGLKNYDPQKDKRFSGSVKL HIPRP Sbjct: 1 MSKLQSDAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 220 KMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 399 KM+VCMLGDAQHV++AEK+GLD MDV+ YHAFLASEA+IKQIP Sbjct: 61 KMRVCMLGDAQHVDQAEKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 400 RLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGNL 552 RLLGPGLNKAGKFPTLVSHQESLE K+NETKATVKFQLKKVLCMGVAVGNL Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNL 171
>tr|B3TLQ8|B3TLQ8_ELAGV Ribosomal protein L10a OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 216
Score = 268 bits (684), Expect = 2e-70 Identities = 135/170 (79%), Positives = 145/170 (85%) Frame = +1
Query: 40 MSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSVKLAHIPRP 219 MSKLQSDVLREAI+Q+ ++S+EKKR F ET+ELQIGLKNYDPQKDKRFSGSVKL HIPRP Sbjct: 1 MSKLQSDVLREAISQITNDSREKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 220 KMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 399 KMKVCMLGDAQHVEEAEKIGLD MDV+ YHAFLASEA+IKQIP Sbjct: 61 KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 400 RLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGN 549 RLLGPGLNKAGKFPTLV+HQESLE K+NETKA VKFQLKKVLCMGVAVGN Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGN 170
>tr|B4FN28|B4FN28_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 382
Score = 267 bits (683), Expect = 2e-70 Identities = 136/179 (75%), Positives = 149/179 (83%) Frame = +1
Query: 16 GSGRSKAIMSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSV 195 G S A MSKLQS+ +++AI+Q+V ++KEK RKF ETVELQIGLKNYDPQKDKRFSGSV Sbjct: 160 GVDLSAAAMSKLQSESVKDAISQIVGDAKEKNRKFTETVELQIGLKNYDPQKDKRFSGSV 219
Query: 196 KLAHIPRPKMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLAS 375 KL HIPRPKMKVCMLGDAQHVEEAEK+GLD MDV+ YHAFLAS Sbjct: 220 KLPHIPRPKMKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKRLAKKYHAFLAS 279
Query: 376 EAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGNL 552 EA+IKQIPRLLGPGLNKAGKFPTLV+HQESLE K+NETKATVKFQLKKVLCMGVAVGNL Sbjct: 280 EAIIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 338
>tr|Q6ZJ04|Q6ZJ04_ORYSJ Ribosomal protein L1 OS=Oryza sativa subsp. japonica GN=OJ1150_A11.31 PE=2 SV=1 Length = 216
Score = 267 bits (682), Expect = 3e-70 Identities = 135/171 (78%), Positives = 146/171 (85%) Frame = +1
Query: 40 MSKLQSDVLREAITQLVSESKEKKRKFVETVELQIGLKNYDPQKDKRFSGSVKLAHIPRP 219 MSKLQ++ L+EAI+Q+V++ KEK RKF ETVELQIGLKNYDPQKDKRFSGSVKL HIPRP Sbjct: 1 MSKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 220 KMKVCMLGDAQHVEEAEKIGLDCMDVDXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIP 399 KMKVCMLGDAQHVEEAEKIGLD MDV+ YHAFLASEA+IKQIP Sbjct: 61 KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 400 RLLGPGLNKAGKFPTLVSHQESLEGKLNETKATVKFQLKKVLCMGVAVGNL 552 RLLGPGLNKAGKFPTLV+HQESLE K+NETKATVKFQLKKVLCMGVAVGNL Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 171
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