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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953391
Clone id TST39A01NGRL0017_K09
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_K09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTGTTTTGTAAGCGGCTATGGCGTCCTCCCTCGTCGCCCGCTTGCCATCCTCGCCCTCGC
CTGCCTCTACATCCTCCGCATTTTTCCCCTTCCAACCCATTCCGCAAAGCTTACCTCTGC
ATAGCCATGTCCGCCATCTCAGATTCTCCTGGTCTGTGAATGCATCTTTAGGGGATGACA
CCTCCACTCAAATTGATGGCCCTGAGGCACCCTCTTCGTCATCATCTCCCGCCGACGCAC
CCTCTCCATCCACATCTACCGTAGTCACATCCAGTAAGCAGCCTCAAACGGTCTCTCTGA
GTCTTGAGGATGTCAACCCTGTTGGTCTTGGTAGACGATCTCGACAGCTCTTTGATGAGG
TGTGGCGTCGCTTTACGGAGCTCGGACAGCTTACACGATCTCCTCGGGACAGTGAGGAGT
ACGAAAGTGTGTTGATAGGAGGCCCAATGTGTGAGTTTACAATCCCTGGGGCAGAGTCCA
CAACTGTCCTTGTTGCAGGTGCCACCAGTCGCGTGGGTCGGATTGTCATTCGAAAAGTTG
GCAGCTCAAAGGCTATAAAGTGAAGGCCTTGGTGCGGGAAAGCAGATCCTGAAACATTGG
AAGGCAC
■■Homology search results ■■ -
sp_hit_id P36785
Definition sp|P36785|VE2_HPV17 Regulatory protein E2 OS=Human papillomavirus type 17
Align length 101
Score (bit) 30.8
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953391|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_K09, 5'
         (607 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36785|VE2_HPV17 Regulatory protein E2 OS=Human papillomaviru...    31   5.6  
sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonic...    30   9.6  

>sp|P36785|VE2_HPV17 Regulatory protein E2 OS=Human papillomavirus
           type 17 GN=E2 PE=3 SV=1
          Length = 452

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
 Frame = -1

Query: 565 LHFIAFELPTFR--------MTIRPTRLVAPATRTVVDSAPGIVNSHIGPPINTLSYSSL 410
           +++I FE+   R        + +    + AP T     S+P         PIN  S SS 
Sbjct: 167 VYYIQFEVDAARFGKTGRWEVHVNEDTIFAPVT----SSSPAAGEGTDASPINAASRSSP 222

Query: 409 SRGDRVSCPSSVKRRHTSSKSCRDRLPRPTGLTSSRLRETV 287
           +RG   +  S+   + TS +  R +   PT  T+   R+ +
Sbjct: 223 ARGLSATSVSTRTTQRTSPRRYRRKASSPTATTTRHKRQDI 263


>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica
           GN=CYCD4-2 PE=2 SV=2
          Length = 383

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = -1

Query: 529 MTIRPTRLVAPATRTVVDSAPGIVNSHIGPPINTLSYSSLSRGDRVSCPSSVKRRHTSSK 350
           +  RP+ + A    TV   A G+V   I       +++ + +G  + C  +++  H S  
Sbjct: 253 LEFRPSEIAAAVAATVAGEATGVVEEDIAE-----AFTHVDKGRVLQCQEAIQDHHYSMA 307

Query: 349 SCRDRLPRP 323
           +     P+P
Sbjct: 308 TINTVQPKP 316
tr_hit_id B8LQR3
Definition tr|B8LQR3|B8LQR3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 102
Score (bit) 143.0
E-value 7.0e-33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953391|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_K09, 5'
         (607 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQR3|B8LQR3_PICSI Putative uncharacterized protein OS=Picea...   143   7e-33
tr|A7Q4K0|A7Q4K0_VITVI Chromosome chr9 scaffold_49, whole genome...   120   2e-26
tr|A9TUM7|A9TUM7_PHYPA Predicted protein OS=Physcomitrella paten...   119   2e-25
tr|A9PHQ9|A9PHQ9_POPTR Putative uncharacterized protein OS=Popul...   116   3e-25
tr|Q8W4D6|Q8W4D6_ARATH Putative uncharacterized protein At1g1672...   113   3e-24
tr|Q9FWQ6|Q9FWQ6_ARATH F17F16.7 protein OS=Arabidopsis thaliana ...   113   3e-24
tr|A9SR28|A9SR28_PHYPA Predicted protein OS=Physcomitrella paten...   113   8e-24
tr|Q5Z8V8|Q5Z8V8_ORYSJ Os06g0704700 protein OS=Oryza sativa subs...   108   5e-23
tr|A2YGS4|A2YGS4_ORYSI Putative uncharacterized protein OS=Oryza...   108   5e-23
tr|Q6YXY0|Q6YXY0_ORYSJ Os02g0137700 protein OS=Oryza sativa subs...   108   5e-23
tr|A2X0N8|A2X0N8_ORYSI Putative uncharacterized protein OS=Oryza...   108   5e-23
tr|A3A2Y6|A3A2Y6_ORYSJ Putative uncharacterized protein OS=Oryza...   108   5e-23
tr|Q84P75|Q84P75_ORYSJ Putative uncharacterized protein OS=Oryza...   108   5e-23
tr|Q00TV5|Q00TV5_OSTTA Putative UOS1 (ISS) OS=Ostreococcus tauri...    76   4e-13
tr|A4S8P7|A4S8P7_OSTLU Predicted protein (Fragment) OS=Ostreococ...    68   1e-10
tr|A8HTK2|A8HTK2_CHLRE Predicted protein OS=Chlamydomonas reinha...    62   4e-09
tr|A1L2N9|A1L2N9_XENLA LOC100036905 protein OS=Xenopus laevis GN...    37   0.89 
tr|B7G0A6|B7G0A6_PHATR Predicted protein OS=Phaeodactylum tricor...    37   1.2  
tr|A8LJY8|A8LJY8_DINSH Putative uncharacterized protein OS=Dinor...    36   1.5  
tr|Q5C0S3|Q5C0S3_SCHJA SJCHGC02679 protein (Fragment) OS=Schisto...    35   2.6  
tr|B4PFD4|B4PFD4_DROYA GE22425 OS=Drosophila yakuba GN=GE22425 P...    34   7.5  
tr|B4IVY9|B4IVY9_DROYA GE14716 OS=Drosophila yakuba GN=GE14716 P...    34   7.5  
tr|A6WA23|A6WA23_KINRD Putative uncharacterized protein OS=Kineo...    33   9.8  

>tr|B8LQR3|B8LQR3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 516

 Score =  143 bits (361), Expect = 7e-33
 Identities = 69/102 (67%), Positives = 86/102 (84%)
 Frame = +3

Query: 297 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEYESVLIGGPMCEFTIPGAE 476
           LSL+DVNPVGLGR+SRQ+FDEVWR+F+ELGQL+R+PR+ EEY+SVL+GGPMCEFTIP A 
Sbjct: 79  LSLDDVNPVGLGRKSRQIFDEVWRKFSELGQLSRTPRNDEEYDSVLVGGPMCEFTIPAAA 138

Query: 477 STTVLVAGATSRVGRIVIRKVGSSKAIK*RPWCGKADPETLE 602
            TTVLV GATSR+GRI++RK+   +  K +    + DPETLE
Sbjct: 139 DTTVLVVGATSRIGRILVRKL-MLRGYKVKALVRRDDPETLE 179


>tr|A7Q4K0|A7Q4K0_VITVI Chromosome chr9 scaffold_49, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029723001
           PE=4 SV=1
          Length = 498

 Score =  120 bits (300), Expect(2) = 2e-26
 Identities = 55/81 (67%), Positives = 70/81 (86%)
 Frame = +3

Query: 297 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEYESVLIGGPMCEFTIPGAE 476
           +SL+DVNPVGLGR+SRQ+FDEVWR+F+ LGQ++R+ R  EE   +  GGPMCEF IPGA+
Sbjct: 2   ISLDDVNPVGLGRKSRQIFDEVWRKFSGLGQISRTTRTDEETLLIREGGPMCEFAIPGAQ 61

Query: 477 STTVLVAGATSRVGRIVIRKV 539
           +TTVLV GATSR+GRIV+RK+
Sbjct: 62  NTTVLVVGATSRIGRIVVRKL 82



 Score = 22.3 bits (46), Expect(2) = 2e-26
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 545 LKGYKVKALVRES 583
           L+GY VKALVR++
Sbjct: 84  LRGYTVKALVRKA 96


>tr|A9TUM7|A9TUM7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_151003 PE=4 SV=1
          Length = 509

 Score =  119 bits (297), Expect = 2e-25
 Identities = 62/104 (59%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
 Frame = +3

Query: 297 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEY--ESVLIGGPMCEFTIPG 470
           LSL+DVNPVGLGRR+RQ+FD  WRR T LGQLT + R S+EY  E V++GGPMC+F  P 
Sbjct: 5   LSLDDVNPVGLGRRTRQVFDAAWRRLTNLGQLTSASRPSDEYDFEKVVVGGPMCDFQTPN 64

Query: 471 AESTTVLVAGATSRVGRIVIRKVGSSKAIK*RPWCGKADPETLE 602
           AE TTVLVAGAT RVGRI++RK+   +  K +    + D ETL+
Sbjct: 65  AELTTVLVAGATGRVGRILVRKL-QLRGYKVKAVVRQNDEETLD 107


>tr|A9PHQ9|A9PHQ9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 584

 Score =  116 bits (290), Expect(2) = 3e-25
 Identities = 57/84 (67%), Positives = 73/84 (86%), Gaps = 3/84 (3%)
 Frame = +3

Query: 297 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPR--DSEEYESVLI-GGPMCEFTIP 467
           L+LEDVNPVGLGR+SRQ+FDEVWR+F+ LGQ++R+ R  D E  +++LI  GPMCEF IP
Sbjct: 85  LNLEDVNPVGLGRKSRQIFDEVWRKFSGLGQISRTTRADDKEALDALLIREGPMCEFAIP 144

Query: 468 GAESTTVLVAGATSRVGRIVIRKV 539
           GA++TTVLV GATSR+GRIV+RK+
Sbjct: 145 GAQNTTVLVVGATSRIGRIVVRKL 168



 Score = 22.3 bits (46), Expect(2) = 3e-25
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 545 LKGYKVKALVRES 583
           L+GY VKALVR++
Sbjct: 170 LRGYTVKALVRKA 182


>tr|Q8W4D6|Q8W4D6_ARATH Putative uncharacterized protein At1g16720;
           F17F16.7 (Putative uncharacterized protein At1g16720)
           OS=Arabidopsis thaliana GN=At1g16720/F17F16.7 PE=2 SV=1
          Length = 598

 Score =  113 bits (283), Expect(2) = 3e-24
 Identities = 55/84 (65%), Positives = 71/84 (84%), Gaps = 3/84 (3%)
 Frame = +3

Query: 297 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRS--PRDSEEYESVLI-GGPMCEFTIP 467
           L L+DVNPVGLGRRSRQ+FDEVWR+F+ LGQ++R+  P + E  +S+LI  GPMCEF +P
Sbjct: 99  LKLDDVNPVGLGRRSRQIFDEVWRKFSGLGQMSRTTRPDEQETLDSLLIREGPMCEFAVP 158

Query: 468 GAESTTVLVAGATSRVGRIVIRKV 539
           GA++ TVLV GATSR+GRIV+RK+
Sbjct: 159 GAQNVTVLVVGATSRIGRIVVRKL 182



 Score = 21.9 bits (45), Expect(2) = 3e-24
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 545 LKGYKVKALVRE 580
           L+GY VKALVR+
Sbjct: 184 LRGYTVKALVRK 195


>tr|Q9FWQ6|Q9FWQ6_ARATH F17F16.7 protein OS=Arabidopsis thaliana
           GN=F17F16.7 PE=4 SV=1
          Length = 583

 Score =  113 bits (283), Expect(2) = 3e-24
 Identities = 55/84 (65%), Positives = 71/84 (84%), Gaps = 3/84 (3%)
 Frame = +3

Query: 297 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRS--PRDSEEYESVLI-GGPMCEFTIP 467
           L L+DVNPVGLGRRSRQ+FDEVWR+F+ LGQ++R+  P + E  +S+LI  GPMCEF +P
Sbjct: 90  LKLDDVNPVGLGRRSRQIFDEVWRKFSGLGQMSRTTRPDEQETLDSLLIREGPMCEFAVP 149

Query: 468 GAESTTVLVAGATSRVGRIVIRKV 539
           GA++ TVLV GATSR+GRIV+RK+
Sbjct: 150 GAQNVTVLVVGATSRIGRIVVRKL 173



 Score = 21.9 bits (45), Expect(2) = 3e-24
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 545 LKGYKVKALVRE 580
           L+GY VKALVR+
Sbjct: 175 LRGYTVKALVRK 186


>tr|A9SR28|A9SR28_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_187481 PE=4 SV=1
          Length = 509

 Score =  113 bits (283), Expect = 8e-24
 Identities = 58/104 (55%), Positives = 78/104 (75%), Gaps = 2/104 (1%)
 Frame = +3

Query: 297 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEY--ESVLIGGPMCEFTIPG 470
           ++L+DVNPV LGRR+RQ+FD+ WRR T+LG LT + R S+EY  E+V++GGPMC+F  P 
Sbjct: 5   ITLDDVNPVRLGRRTRQVFDDAWRRLTKLGLLTSASRPSDEYDFETVVVGGPMCDFQTPN 64

Query: 471 AESTTVLVAGATSRVGRIVIRKVGSSKAIK*RPWCGKADPETLE 602
           AE TTVL+AGAT RVGRI+IRK+   +  K +    + D +TLE
Sbjct: 65  AELTTVLIAGATGRVGRILIRKL-QLRGYKVKALVRQNDEQTLE 107


>tr|Q5Z8V8|Q5Z8V8_ORYSJ Os06g0704700 protein OS=Oryza sativa subsp.
           japonica GN=P0018H04.3 PE=2 SV=1
          Length = 648

 Score =  108 bits (271), Expect(2) = 5e-23
 Identities = 53/79 (67%), Positives = 68/79 (86%), Gaps = 3/79 (3%)
 Frame = +3

Query: 312 VNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDS--EEYESVLI-GGPMCEFTIPGAEST 482
           V+PVGLGRRSRQ+FDEVWR+F+ LGQ++ +   +  EE ++VLI GGPMCEFT+PGA+ T
Sbjct: 155 VSPVGLGRRSRQIFDEVWRKFSRLGQMSSASSTALAEEEQAVLIRGGPMCEFTVPGAQDT 214

Query: 483 TVLVAGATSRVGRIVIRKV 539
           TVLV GATSR+GRIV+RK+
Sbjct: 215 TVLVVGATSRIGRIVVRKL 233



 Score = 22.3 bits (46), Expect(2) = 5e-23
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 545 LKGYKVKALVRES 583
           L+GY VKALVR +
Sbjct: 235 LRGYNVKALVRRN 247


>tr|A2YGS4|A2YGS4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24385 PE=4 SV=1
          Length = 648

 Score =  108 bits (271), Expect(2) = 5e-23
 Identities = 53/79 (67%), Positives = 68/79 (86%), Gaps = 3/79 (3%)
 Frame = +3

Query: 312 VNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDS--EEYESVLI-GGPMCEFTIPGAEST 482
           V+PVGLGRRSRQ+FDEVWR+F+ LGQ++ +   +  EE ++VLI GGPMCEFT+PGA+ T
Sbjct: 155 VSPVGLGRRSRQIFDEVWRKFSRLGQMSSASSTALAEEEQAVLIRGGPMCEFTVPGAQDT 214

Query: 483 TVLVAGATSRVGRIVIRKV 539
           TVLV GATSR+GRIV+RK+
Sbjct: 215 TVLVVGATSRIGRIVVRKL 233



 Score = 22.3 bits (46), Expect(2) = 5e-23
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 545 LKGYKVKALVRES 583
           L+GY VKALVR +
Sbjct: 235 LRGYNVKALVRRN 247


>tr|Q6YXY0|Q6YXY0_ORYSJ Os02g0137700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0026E05.10 PE=4 SV=1
          Length = 598

 Score =  108 bits (271), Expect(2) = 5e-23
 Identities = 55/86 (63%), Positives = 70/86 (81%), Gaps = 5/86 (5%)
 Frame = +3

Query: 297 LSLEDV--NPVGLGRRSRQLFDEVWRRFTELGQL-TRSPRDSEEYESVLI--GGPMCEFT 461
           ++L+DV  NPVGLGRRSRQ+FDEVWR+F+ LGQ+ T +  + EE E VL   GGPMC+F 
Sbjct: 98  VALDDVIVNPVGLGRRSRQIFDEVWRKFSRLGQMSTVASPEQEEQEGVLFRGGGPMCDFA 157

Query: 462 IPGAESTTVLVAGATSRVGRIVIRKV 539
           +PGA+ TTVLV GATSR+GRIV+RK+
Sbjct: 158 VPGAQDTTVLVVGATSRIGRIVVRKL 183



 Score = 22.3 bits (46), Expect(2) = 5e-23
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 545 LKGYKVKALVRES 583
           L+GY VKALVR +
Sbjct: 185 LRGYNVKALVRRN 197