DK953404
Clone id TST39A01NGRL0017_K22
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_K22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CAATACGACGCACACTCTGCATGGGGATTCAAGGAGAGCTTTACTTTGCAGAGTGCAGGG
AGAAGAGTCTCTTCACCTACGGTTCTGCAGGAGAACGTACCTGATAAGGGCATCTCTTTC
AAGAACTGAAGATGGATGGAGTAGCAAAGATGTGGGACGGCAACACAATGTCCCAAGCTT
CCAAGACAAGACAGTCGATGCAGTGAAGAGTTACCCATGGGATAAGTTATGTTGGCGATT
TTCTCAGCGGTTACTGGATCTTATGTGGATACCCATGAAGTGGCTGGCGATTCCAGTCTT
TGCATTGTCAGCATTAAGTGAATTCCTCTACACCTTGTCAGCAGGAAAAGATATCCTCAT
ACTAGTTGGGATACTTTCTGGGGTTCTCGTTGCAACAGTTATAGGAAATGCTTTCCTTGA
TGTGATGAAGGAGCTTCAGCAGGATGGGAAGGCCTCATGGCCTTTGATAATGTTGGGGCT
TTTCTTTCTACTTCTGAAGCTTCCTGGCCCTTACTACCCAAGCTGGGCGGCAGCATTCGT
TCCACATATGGGAAAT
■■Homology search results ■■ -
sp_hit_id P09745
Definition sp|P09745|SHU1_ECOLX Shufflon protein A OS=Escherichia coli
Align length 40
Score (bit) 30.8
E-value 4.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953404|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_K22, 5'
(556 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P09745|SHU1_ECOLX Shufflon protein A OS=Escherichia coli PE=4... 31 4.7

>sp|P09745|SHU1_ECOLX Shufflon protein A OS=Escherichia coli PE=4
SV=1
Length = 474

Score = 30.8 bits (68), Expect = 4.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1

Query: 430 GASAGWEGLMAFDNVGAFLSTSEASWPLLPKLGGSIRSTY 549
GAS GL+ DN GA LS +W K GS+ +Y
Sbjct: 338 GASCSPNGLVGRDNTGAILSCQSGTW----KTSGSLNGSY 373


tr_hit_id A7P9D7
Definition tr|A7P9D7|A7P9D7_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera
Align length 124
Score (bit) 51.6
E-value 3.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953404|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_K22, 5'
(556 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7P9D7|A7P9D7_VITVI Chromosome chr3 scaffold_8, whole genome ... 52 3e-05
tr|A9RHV1|A9RHV1_PHYPA Predicted protein OS=Physcomitrella paten... 50 8e-05
tr|Q9XIB8|Q9XIB8_ARATH F13F21.5 protein (Putative uncharacterize... 49 1e-04
tr|B8LMR1|B8LMR1_PICSI Putative uncharacterized protein OS=Picea... 49 1e-04
tr|B5DQT4|B5DQT4_DROPS GA23663 OS=Drosophila pseudoobscura pseud... 37 0.55
tr|B4GUL3|B4GUL3_DROPE GL26193 OS=Drosophila persimilis GN=GL261... 37 0.55
tr|A7NUE0|A7NUE0_VITVI Chromosome chr18 scaffold_1, whole genome... 37 0.72
tr|Q10LM4|Q10LM4_ORYSJ Retrotransposon protein, putative, unclas... 35 2.0
tr|A9NNS5|A9NNS5_PICSI Putative uncharacterized protein OS=Picea... 35 2.7
tr|Q84MV5|Q84MV5_ORYSJ Transposon protein, putative, CACTA, En/S... 33 7.8
tr|Q7XLJ5|Q7XLJ5_ORYSA OSJNBa0009K15.15 protein OS=Oryza sativa ... 33 7.8

>tr|A7P9D7|A7P9D7_VITVI Chromosome chr3 scaffold_8, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00036527001
PE=4 SV=1
Length = 253

Score = 51.6 bits (122), Expect = 3e-05
Identities = 32/124 (25%), Positives = 52/124 (41%)
Frame = +2

Query: 185 DKTVDAVKSYPWDKLCWRFSQRLLDLMWIPMKWLAIPVFALSALSEFLYTLSAGKDXXXX 364
D + VKS+PW++ F Q +LDL +K+L P+ A+S+LSE Y + K
Sbjct: 94 DSSPQPVKSFPWNRTLENFIQLILDLTLAVIKYLCAPLLAVSSLSEMSYCANEKKLFLVP 153

Query: 365 XXXXXXXXXATVIGNAFLDVMKELQQDGKASWXXXXXXXXXXXXXXXXXXXXSWAAAFVP 544
A ++ +A L++ L +D + +W W F+P
Sbjct: 154 IPLLIGIVVAGLLKDAALELSPVL-KDAEVAWHLIAIAIFFTLLKLPGPYYPYWGRIFIP 212

Query: 545 HMGN 556
H N
Sbjct: 213 HFAN 216


>tr|A9RHV1|A9RHV1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_66428 PE=4 SV=1
Length = 244

Score = 50.1 bits (118), Expect = 8e-05
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Frame = +2

Query: 188 KTVDAVKSYPWDKLCWRFSQRLLDLMWIPMKWLAIPVFALSALSEFLYTLSAGKDXXXXX 367
K + ++ +PW K F QRLL W K+LAIPV A S LSE YTL K
Sbjct: 94 KAPEPIRVFPWGKAGNLFVQRLLHQFWTVGKYLAIPVLAASMLSELSYTLLQEK------ 147

Query: 368 XXXXXXXXATVIGNAFLDVMKELQQD-------GKASWXXXXXXXXXXXXXXXXXXXXSW 526
+ G AF +MKE + G+ W +W
Sbjct: 148 --VLIIPAGMIGGFAFAGMMKETAVELAADIEVGQFPWHLVALGFMFGALKFIGPYLPAW 205

Query: 527 AAAFVPHMGN 556
VPH N
Sbjct: 206 GRVSVPHFAN 215


>tr|Q9XIB8|Q9XIB8_ARATH F13F21.5 protein (Putative uncharacterized
protein At1g49510) (At1g49510) OS=Arabidopsis thaliana
GN=At1g49510 PE=2 SV=1
Length = 240

Score = 49.3 bits (116), Expect = 1e-04
Identities = 42/176 (23%), Positives = 63/176 (35%)
Frame = +2

Query: 29 SRRALLCRVQGEESLHLRFCRRTYLIRASLSRTEDGWSSKDVGRQHNVPSFQDKTVDAVK 208
S+R+LLCR ES H + L RT+ W D + VK
Sbjct: 48 SKRSLLCRAIHMESGHSGEQPKKLNFDNLLRRTKHVW---------------DNSPQPVK 92

Query: 209 SYPWDKLCWRFSQRLLDLMWIPMKWLAIPVFALSALSEFLYTLSAGKDXXXXXXXXXXXX 388
+PW++ F Q +LDL +K+L +P+ A+S++SE Y K
Sbjct: 93 EFPWNRAFGNFIQLVLDLAISVVKFLFVPILAVSSISEMSYCAHERKLALVPFPLVIGMV 152

Query: 389 XATVIGNAFLDVMKELQQDGKASWXXXXXXXXXXXXXXXXXXXXSWAAAFVPHMGN 556
A V+ L + L ++ + W W VPH N
Sbjct: 153 VAGVLQETALKISPRL-KEAEVPWHLIAMMMFFTLIKLPGPYYPYWGRLLVPHFAN 207


>tr|B8LMR1|B8LMR1_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 247

Score = 49.3 bits (116), Expect = 1e-04
Identities = 30/129 (23%), Positives = 52/129 (40%)
Frame = +2

Query: 170 VPSFQDKTVDAVKSYPWDKLCWRFSQRLLDLMWIPMKWLAIPVFALSALSEFLYTLSAGK 349
V + ++ + +K +PWD++ +F L L + KWL IPV +S+LSE +Y K
Sbjct: 88 VRNLWERCPEPIKVFPWDRVYNKFFHHLFRLAFEVAKWLFIPVLFVSSLSEMVYCGWQNK 147

Query: 350 DXXXXXXXXXXXXXATVIGNAFLDVMKELQQDGKASWXXXXXXXXXXXXXXXXXXXXSWA 529
+ A ++ +++ + LQ+ G W W
Sbjct: 148 ELLIPIGMLAGIYLAGILKETAVELSENLQEGG-FPWHLAIIGAFFALIKFPGPYYPYWG 206

Query: 530 AAFVPHMGN 556
F+PH N
Sbjct: 207 RIFLPHFAN 215


>tr|B5DQT4|B5DQT4_DROPS GA23663 OS=Drosophila pseudoobscura
pseudoobscura GN=GA23663 PE=4 SV=1
Length = 724

Score = 37.4 bits (85), Expect = 0.55
Identities = 27/86 (31%), Positives = 41/86 (47%)
Frame = +2

Query: 53 VQGEESLHLRFCRRTYLIRASLSRTEDGWSSKDVGRQHNVPSFQDKTVDAVKSYPWDKLC 232
V E+ + L R L R+S + GWS+ + +P +Q K P++ L
Sbjct: 207 VHAEQWVMLGVIRVRQLRRSS---RKIGWSAPEYTDSSYLPGWQKP----YKVVPYEDLH 259

Query: 233 WRFSQRLLDLMWIPMKWLAIPVFALS 310
WR ++ W+PMKWLAI F L+
Sbjct: 260 WRVTRP-----WVPMKWLAIDSFLLN 280


>tr|B4GUL3|B4GUL3_DROPE GL26193 OS=Drosophila persimilis GN=GL26193
PE=4 SV=1
Length = 637

Score = 37.4 bits (85), Expect = 0.55
Identities = 27/86 (31%), Positives = 41/86 (47%)
Frame = +2

Query: 53 VQGEESLHLRFCRRTYLIRASLSRTEDGWSSKDVGRQHNVPSFQDKTVDAVKSYPWDKLC 232
V E+ + L R L R+S + GWS+ + +P +Q K P++ L
Sbjct: 207 VHAEQWVMLGVIRVRQLRRSS---RKIGWSAPEYTDSSYLPGWQKP----YKVVPYEDLH 259

Query: 233 WRFSQRLLDLMWIPMKWLAIPVFALS 310
WR ++ W+PMKWLAI F L+
Sbjct: 260 WRVTRP-----WVPMKWLAIDSFLLN 280


>tr|A7NUE0|A7NUE0_VITVI Chromosome chr18 scaffold_1, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00015009001
PE=4 SV=1
Length = 168

Score = 37.0 bits (84), Expect = 0.72
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2

Query: 197 DAVKSYPWDKLCWRFSQRLLDLMWIPMKWLAIPVFALSALSEFLYTLSAGKD 352
D++K +PW K Q+LL L +KW I +F LS++S+ ++ +S K+
Sbjct: 75 DSLKDFPWKKAEDTVLQQLLLLGQKALKWSFITLFILSSVSDVIFCISRNKE 126


>tr|Q10LM4|Q10LM4_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os03g22300 PE=4 SV=1
Length = 1349

Score = 35.4 bits (80), Expect = 2.0
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3

Query: 551 PYVERMLPPSLGSKGQEASEVERKAPTLSKAMRPSHPAEAPSSHQG 414
PYV R++ LG+ GQ ++++ P L P P APSSH G
Sbjct: 1273 PYVMRLIQDKLGAAGQNLKKLKQYKPRLQLGA-PRAPRAAPSSHPG 1317


>tr|A9NNS5|A9NNS5_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 259

Score = 35.0 bits (79), Expect = 2.7
Identities = 24/120 (20%), Positives = 42/120 (35%)
Frame = +2

Query: 197 DAVKSYPWDKLCWRFSQRLLDLMWIPMKWLAIPVFALSALSEFLYTLSAGKDXXXXXXXX 376
+ V+ +PW K R L + K L IP+ A++ L E Y ++ K+
Sbjct: 100 EPVRKFPWQKAGERVIHHLFQPILGVAKRLLIPILAVTFLMEASYCIAQNKELFIPIGLL 159

Query: 377 XXXXXATVIGNAFLDVMKELQQDGKASWXXXXXXXXXXXXXXXXXXXXSWAAAFVPHMGN 556
A ++ L++ + L++ G W W +PH N
Sbjct: 160 AGSVFAEILKETALELSQNLKEGG-FPWHLLAMALIFSLIKFLGPFYPYWGGILLPHFAN 218


>tr|Q84MV5|Q84MV5_ORYSJ Transposon protein, putative, CACTA, En/Spm
sub-class OS=Oryza sativa subsp. japonica
GN=LOC_Os03g28020 PE=4 SV=1
Length = 542

Score = 33.5 bits (75), Expect = 7.8
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3

Query: 551 PYVERMLPPSLGSKGQEASEVERKAPTLSKAMRPSHPAEAPSSHQG 414
PY+ R++ LG+ GQ + ++ P L P P APSSH G
Sbjct: 285 PYIMRLIQDKLGAAGQNLKKHKQYKPRLQLGA-PCAPRTAPSSHPG 329