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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953460
Clone id TST39A01NGRL0017_N06
Library
Length 628
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_N06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCCTTGCAAGCTCGTCGTCTTCTCAACCATTTTCCTTGCAATCCCATTCCTAGCATGCT
CATTGTATCCATTCGTGCTCTTCCATGCCCGGGCTCCTGCCGCGCTTAAACGAGCCAATT
ATGTCATGTAACCTCTCTGCCCAAGACAGCTACAACATATCTACCTGGCTTTGATTGTCT
CAAGCTGCCCGTACATGCCGCTATCGACCTCTGTTATATACCTCCTACATGCCCTCGGCT
ACTCTCAGCCTTGCCGTGCCAAACTACATATACTGTTGCCCTTTTTTTTTCCCCACCGGA
TTCATCCTCTTCGCTTTACCAAGGCACACCATATTCTCCACCTTCCCTAGTTGTATCGTC
TCATACAACCACCTGCTGCACCATTTTCTTGCAAGCGCACCCAAATCAGATCTAATTCAT
TCAGTAGCTTCTTATTGGTGAGCCCGAACACTTCGCCAGCTGTTTGTTGCTCTCCTACAA
GCACTGCTATTGTTTCAAGGGCCTTGTTCACATGCGTTCAAGCCACAACAGGCCTTGCTC
CATTCTTCACTGCTACTCGTCCAACGTTCAGCTTCACTGCACATTTACCACCTCCGAGGC
TACGTACTTGGGGAGAAGGGATTGGCAT
■■Homology search results ■■ -
sp_hit_id P04275
Definition sp|P04275|VWF_HUMAN von Willebrand factor OS=Homo sapiens
Align length 112
Score (bit) 33.9
E-value 0.71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953460|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_N06, 5'
         (628 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04275|VWF_HUMAN von Willebrand factor OS=Homo sapiens GN=VWF...    34   0.71 
sp|Q0HIF6|CHEB2_SHESM Chemotaxis response regulator protein-glut...    32   2.7  
sp|Q02265|VE4_HPV13 Probable protein E4 OS=Human papillomavirus ...    32   3.5  
sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2         31   4.5  
sp|Q0HVI0|CHEB2_SHESR Chemotaxis response regulator protein-glut...    31   4.5  
sp|Q5M7C3|SP13B_XENLA Histone deacetylase complex subunit SAP130...    31   5.9  
sp|P18538|VGLB_GAHVR Glycoprotein B OS=Gallid herpesvirus 2 (str...    30   7.7  
sp|A1L1L2|TM214_RAT Transmembrane protein 214 OS=Rattus norvegic...    30   7.7  
sp|Q8BM55|TM214_MOUSE Transmembrane protein 214 OS=Mus musculus ...    30   7.7  

>sp|P04275|VWF_HUMAN von Willebrand factor OS=Homo sapiens GN=VWF PE=1
            SV=2
          Length = 2813

 Score = 33.9 bits (76), Expect = 0.71
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
 Frame = +2

Query: 65   VSIRALPCPGSCRA*TSQLCHVTSLPKTATTYLPGFDCLKLPVHAAIDLCYIPPT--C-- 232
            V+    PCP + +A T  LC V  L + A    P ++C+  PV      C +PP   C  
Sbjct: 2289 VNCTTQPCP-TAKAPTCGLCEVARLRQNADQCCPEYECVCDPVS-----CDLPPVPHCER 2342

Query: 233  ---PRLLSALPCQTTYTVAXXXXXXXXXXXXYQGTPYSPPSLVVSSHTTTCC 379
               P L +   C+  +T A                P  PP  + +   T CC
Sbjct: 2343 GLQPTLTNPGECRPNFTCACRKEECKRV-----SPPSCPPHRLPTLRKTQCC 2389


>sp|Q0HIF6|CHEB2_SHESM Chemotaxis response regulator
           protein-glutamate methylesterase 2 OS=Shewanella sp.
           (strain MR-4) GN=cheB2 PE=3 SV=1
          Length = 351

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 387 SCKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTC-VQATTGLAPFFTATRP 563
           S    ++++   +  ++V P+  PA+     +T +V+    T   +A   L   F A  P
Sbjct: 128 SAAHAKLKTQRAAPAVVVQPSHKPALSSRVINTQLVAIGASTGGTEAILSLLQQFPAVMP 187

Query: 564 TFSFTAHLPPPRLRTWGE 617
               T H+PP   RT+ E
Sbjct: 188 PIVITQHMPPGFTRTFAE 205


>sp|Q02265|VE4_HPV13 Probable protein E4 OS=Human papillomavirus
           type 13 GN=E4 PE=3 SV=1
          Length = 118

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +3

Query: 366 QPPAAPFS--CKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLA 539
           Q PAAP    CKR  +  N      L +P T  A+C S T+T          VQ TT   
Sbjct: 48  QCPAAPRKNVCKRRLVNDNEDLHVPLETPRTHKALCVSQTTTP-------WTVQTTTSTL 100

Query: 540 PFFTATRPTFSFTAHL 587
              T T+   + T  L
Sbjct: 101 TITTITKDGTTVTVQL 116


>sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2
          Length = 5179

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +3

Query: 438  VSPNTSPAVCCSPTSTAIVSRALFTCVQATTGL---APFFTATRPTFSFTAHLPPPRLRT 608
            V+P  +P    +PT+T I +    T     TG     P  T+T P    T   PPP   T
Sbjct: 4161 VTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPESST 4220


>sp|Q0HVI0|CHEB2_SHESR Chemotaxis response regulator
           protein-glutamate methylesterase 2 OS=Shewanella sp.
           (strain MR-7) GN=cheB2 PE=3 SV=1
          Length = 351

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 387 SCKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTC-VQATTGLAPFFTATRP 563
           S    ++++   +  ++V P+  PA+     +T +V+    T   +A   L   F A  P
Sbjct: 128 SAAHAKLKTQRAAPAVVVQPSHKPALSNRVINTQLVAIGASTGGTEAILSLLQQFPAVMP 187

Query: 564 TFSFTAHLPPPRLRTWGE 617
               T H+PP   RT+ E
Sbjct: 188 PIVITQHMPPGFTRTFAE 205


>sp|Q5M7C3|SP13B_XENLA Histone deacetylase complex subunit SAP130-B
           OS=Xenopus laevis GN=sap130-B PE=2 SV=1
          Length = 1041

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
 Frame = +3

Query: 474 PTSTAIVSRALFTCVQATTGLAPFFTAT---------RPTFSFTAHLPP 593
           P +T  VS A+   V AT   +P  T T         RPT +F  H PP
Sbjct: 245 PVTTTSVSPAVVATVSATRAQSPVITTTPAHAAEPVLRPTLAFQQHPPP 293


>sp|P18538|VGLB_GAHVR Glycoprotein B OS=Gallid herpesvirus 2 (strain
           RB-1b) GN=GB PE=3 SV=1
          Length = 865

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = +3

Query: 471 SPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPR-------LRTWGEGI 623
           SP++  + SR + + VQ +   + F+    P  S    L PPR          WGEGI
Sbjct: 22  SPSTQNVTSREVVSSVQLSEEESTFYLCPPPVGSTVIRLEPPRKCPEPRKATEWGEGI 79


>sp|A1L1L2|TM214_RAT Transmembrane protein 214 OS=Rattus norvegicus
           GN=Tmem214 PE=2 SV=1
          Length = 685

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 25/82 (30%), Positives = 33/82 (40%)
 Frame = +3

Query: 30  IFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PLCPRQLQHIYLALIVSSCPYMPLST 209
           +F  +  LA    P    H   P+ L RA     P CP  ++   LA +       PLST
Sbjct: 343 LFPRLKVLAFGAKPESSLHTYFPSFLSRAT----PSCPAAMKKELLASLTQCLTVDPLST 398

Query: 210 SVIYLLHALGYSQPCRAKLHIL 275
           SV   L+    SQ      H+L
Sbjct: 399 SVWRQLYPKHLSQSSLLLEHLL 420


>sp|Q8BM55|TM214_MOUSE Transmembrane protein 214 OS=Mus musculus
           GN=Tmem214 PE=2 SV=1
          Length = 687

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 25/82 (30%), Positives = 33/82 (40%)
 Frame = +3

Query: 30  IFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PLCPRQLQHIYLALIVSSCPYMPLST 209
           +F  +  LA    P    H   P+ L RA     P CP  ++   LA +       PLST
Sbjct: 345 LFPRLKVLAFGAKPESSLHTYFPSFLSRAT----PSCPAAMKKELLASLTQCLTVDPLST 400

Query: 210 SVIYLLHALGYSQPCRAKLHIL 275
           SV   L+    SQ      H+L
Sbjct: 401 SVWRQLYPKHLSQSSLLLEHLL 422
tr_hit_id Q4T031
Definition tr|Q4T031|Q4T031_TETNG Chromosome undetermined SCAF11373, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 111
Score (bit) 37.0
E-value 0.96
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953460|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_N06, 5'
         (628 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4T031|Q4T031_TETNG Chromosome undetermined SCAF11373, whole ...    37   0.96 
tr|B4L481|B4L481_DROMO GI15699 OS=Drosophila mojavensis GN=GI156...    37   0.96 
tr|B6KYB4|B6KYB4_BRAFL Putative uncharacterized protein OS=Branc...    36   1.6  
tr|A7SZ51|A7SZ51_NEMVE Predicted protein OS=Nematostella vectens...    36   2.2  
tr|B6M8V1|B6M8V1_BRAFL Putative uncharacterized protein OS=Branc...    35   2.8  
tr|A4I578|A4I578_LEIIN Putative uncharacterized protein OS=Leish...    34   6.2  
tr|B0E3T8|B0E3T8_LACBS Predicted protein OS=Laccaria bicolor (st...    34   6.2  
tr|B0D716|B0D716_LACBS Predicted protein OS=Laccaria bicolor (st...    34   6.2  
tr|B7GD26|B7GD26_PHATR Predicted protein OS=Phaeodactylum tricor...    34   8.1  
tr|B4JNT3|B4JNT3_DROGR GH24882 (Fragment) OS=Drosophila grimshaw...    34   8.1  
tr|A7SAA0|A7SAA0_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   8.1  
tr|B4DMS3|B4DMS3_HUMAN cDNA FLJ59036, highly similar to von Will...    34   8.2  

>tr|Q4T031|Q4T031_TETNG Chromosome undetermined SCAF11373, whole
            genome shotgun sequence. (Fragment) OS=Tetraodon
            nigroviridis GN=GSTENG00009544001 PE=4 SV=1
          Length = 2172

 Score = 37.0 bits (84), Expect = 0.96
 Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
 Frame = +3

Query: 63   LYPFVLFHARAPAALKRANYVM*PLCPRQLQHIYLAL--IVSSCPYMPLSTSVIYLLHAL 236
            L+P  L H   P  L    + +  L P  L H++  L  +    P  PL     +LLH L
Sbjct: 1660 LHPLHLHHLLHPLHLHHLLHPLHLLHPLHLHHLHHLLHPLHLLHPLHPL-----HLLHPL 1714

Query: 237  GYSQPCRAKLHILLPFFFPHRIHPLRF------TKAHHILHLP*LYRLIQP 371
             Y       LH+L P    H +HPL           HH+LH   L+ L+ P
Sbjct: 1715 -YLHHLLHPLHLLHPLHLHHLLHPLHLLHPLHLHHLHHLLHPLHLHHLLHP 1764



 Score = 35.0 bits (79), Expect = 3.7
 Identities = 27/93 (29%), Positives = 40/93 (43%)
 Frame = +3

Query: 63   LYPFVLFHARAPAALKRANYVM*PLCPRQLQHIYLALIVSSCPYMPLSTSVIYLLHALGY 242
            L+P  L H      L    +++ PL    L H+   L      ++      ++LLH L Y
Sbjct: 1720 LHPLHLLHPLHLHHLLHPLHLLHPLHLHHLHHLLHPL------HLHHLLHPLHLLHPL-Y 1772

Query: 243  SQPCRAKLHILLPFFFPHRIHPLRFTKAHHILH 341
                   LH+L P +  H +HPL     HH+LH
Sbjct: 1773 LHHLHHPLHLLHPLYLHHLLHPLHL---HHLLH 1802


>tr|B4L481|B4L481_DROMO GI15699 OS=Drosophila mojavensis GN=GI15699
            PE=4 SV=1
          Length = 2164

 Score = 37.0 bits (84), Expect = 0.96
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 471  SPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPRLRTWGEGIG 626
            SP +T+  + A+     ATT      T T  T S T  LP  RL  WG+ +G
Sbjct: 1948 SPAATSATTAAITATAAATTAATTTATTTASTSSTTGTLPKDRLEEWGKPLG 1999


>tr|B6KYB4|B6KYB4_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_117208 PE=4 SV=1
          Length = 2419

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 387  SCKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTAT-RP 563
            S   T + S++ SS +    +TS A   S T+T   +    T  +ATT   P   AT RP
Sbjct: 1191 SSSTTPLSSSASSSTM----STSSASSSSSTTTTKATTTTSTKAEATTSTQPLVLATSRP 1246

Query: 564  TFSFTAHLPPPRLRT 608
            T   + HLPP R  T
Sbjct: 1247 TTVTSTHLPPTRSPT 1261


>tr|A7SZ51|A7SZ51_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g219815 PE=4 SV=1
          Length = 323

 Score = 35.8 bits (81), Expect = 2.2
 Identities = 46/183 (25%), Positives = 60/183 (32%), Gaps = 10/183 (5%)
 Frame = +2

Query: 38  CNPIPSMLIVSIRALPC------PGSCRA*TSQLCHVTS---LPKTATTYLPGFDCLKLP 190
           C P+PS  I    A+PC      P  C A     C+      +P  AT   P   C  +P
Sbjct: 173 CQPMPSHAI-PWHAMPCHPIPCYPMPCHACHPMPCNAIPCHPMPSHATPCHP-MPCHLMP 230

Query: 191 VHAAIDLCYIPPTCPRLLSALPCQTTYTVAXXXXXXXXXXXXYQGTPYSP-PSLVVSSHT 367
            HA    C+  P  P    A+PC      A               TP  P P  ++ SH 
Sbjct: 231 SHAIS--CHPMPCHPMPPHAIPCH-----AISCHPMPSHAMPSHATPCHPMPCHLMPSHA 283

Query: 368 TTCCTIFLQAHPNQI*FIQ*LLIGEPEHFASCLLLSYKHCYCFKGLVHMRSSHNRPCSIL 547
             C  I  Q  P+          G P + + C               H   SH  PC  +
Sbjct: 284 IPCHAIPCQPMPSH---------GMPSYASQC---------------HPMPSHGMPCHAI 319

Query: 548 HCY 556
            C+
Sbjct: 320 PCH 322


>tr|B6M8V1|B6M8V1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_79554 PE=4 SV=1
          Length = 960

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 563 WTSSSEEWSKACCGLNACEQGP*NNSSACRRATNSWR 453
           W       SK+C  +N C   P  N  ACR  TNS+R
Sbjct: 562 WNGYRLSGSKSCVEINECASNPCRNGGACRDLTNSYR 598


>tr|A4I578|A4I578_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ30.0830 PE=4 SV=1
          Length = 487

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 435 LVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPP 596
           L SP++SPA   +P +T ++     + +  T+   P   A  PT +   H PPP
Sbjct: 152 LASPSSSPATLNAPYTTPVIPPRASSTLTTTSPSLPLLPAPPPTPAGLPHSPPP 205


>tr|B0E3T8|B0E3T8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_335915 PE=4 SV=1
          Length = 1129

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +3

Query: 135 LCPRQLQHIYLALIVSSCPYMPLSTSVIYLL-------HALGYSQPCRAKLHILLPFFFP 293
           L P  ++     L+  + PY PLSTSV+ +L       H   Y Q     ++I +     
Sbjct: 296 LKPATVEEFQEGLLTFTWPYFPLSTSVLSMLSLNDPATHVQLYCQALGTWVNINVGHVIE 355

Query: 294 HRIHPLRFTKAHHILHLP*LYRLIQPPAAP 383
            +     F K  H+++ P   RL++P + P
Sbjct: 356 LKEGARVFLKPSHVVNYPDFDRLLKPESTP 385


>tr|B0D716|B0D716_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_326019 PE=4 SV=1
          Length = 1141

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +3

Query: 135 LCPRQLQHIYLALIVSSCPYMPLSTSVIYLL-------HALGYSQPCRAKLHILLPFFFP 293
           L P  ++     L+  + PY PLSTSV+ +L       H   Y Q     ++I +     
Sbjct: 308 LKPATVEEFQEGLLTFTWPYFPLSTSVLSMLSLNDPATHVQLYCQALGTWVNINVGHVIE 367

Query: 294 HRIHPLRFTKAHHILHLP*LYRLIQPPAAP 383
            +     F K  H+++ P   RL++P + P
Sbjct: 368 LKEGARVFLKPSHVVNYPDFDRLLKPESTP 397


>tr|B7GD26|B7GD26_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_50133 PE=4 SV=1
          Length = 629

 Score = 33.9 bits (76), Expect = 8.1
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = +3

Query: 354 YRLIQPPAAPFSCKRTQIR----SNSFSSFLLVSPNTSPAVCCSPTST--AIVSRALFTC 515
           Y+L  PP  P++C+R   R        ++   V P  SP+   S  S+  ++VS     C
Sbjct: 121 YKLHLPPPLPWTCRRRANRLRQEQEQQAAIAKVLPEPSPSDQDSSVSSRESLVSHTSVEC 180

Query: 516 VQATTGLAPFFTATR--PTFSFTAHLPP 593
            QA T      T T    T S T+H  P
Sbjct: 181 AQAETSTTTLTTTTSTITTSSSTSHTTP 208


>tr|B4JNT3|B4JNT3_DROGR GH24882 (Fragment) OS=Drosophila grimshawi
            GN=GH24882 PE=4 SV=1
          Length = 6469

 Score = 33.9 bits (76), Expect = 8.1
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
 Frame = +3

Query: 414  NSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQ------ATTGLAPFFTATRPTFSF 575
            N  +SF+  SP +S  V  + T+T I S A  T         ATT      T +  T S 
Sbjct: 6229 NLLASFISSSPASS-TVPTTLTATTIASAATVTATATATDATATTATTATTTTSGSTSST 6287

Query: 576  TAHLPPPRLRTWGEGIG 626
            +  LP  RL  WG+ +G
Sbjct: 6288 SGTLPKDRLEEWGKPLG 6304