DK953469 |
Clone id |
TST39A01NGRL0017_N15 |
Library |
TST39 |
Length |
459 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_N15. 5' end sequence. |
Accession |
DK953469 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1228Contig1 |
Sequence |
AGCCAGGGTATTCCTCTCCCTCCCTCTCACACATATCTCTCCCTCTCCCTCTCCCACCCA CTTGTCTATACCTCACGGCCGGCCGACTTCCCTCTTCGACAGACCCGCTATTGACTTCGA CAACTCTGCTGCAACAGAAAGCTCCTGCTCGCCATAGCCAAGAAGAAATAGCTTATATGA GCACTTAACTGACCACTTTTGATCAAGTTAAGAATTTGGGTCATTTAGTTAAGCATTTGG GTCCTCATGGATTCCCCCAACAATGTGACAGAGGCCGCCCCTCTCGTAAATTTTAGCGCT TCCTCTCTCATCGTCACATCCTTGGTGGCCCTCATAGGGGCCCTTCTTCTTGTGAAATTT TTGCAGAGAGCGAGGGTGAAGCTCCCCCCAGGCCCCTTTGCTTGGCCCATTGTGGGCAAT TTCCTTCAACTGAGGAGTGGGCTTACCCCTTCAAACCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q04468 |
Definition |
sp|Q04468|TCMO_HELTU Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus |
Align length |
50 |
Score (bit) |
42.7 |
E-value |
0.0007 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953469|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_N15, 5' (459 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q04468|TCMO_HELTU Trans-cinnamate 4-monooxygenase OS=Helianth... 43 7e-04 sp|Q29510|CP2CU_RABIT Cytochrome P450 2C30 OS=Oryctolagus cunicu... 43 7e-04 sp|P37124|C77A2_SOLME Cytochrome P450 77A2 OS=Solanum melongena ... 42 0.001 sp|P56593|CP2AC_MOUSE Cytochrome P450 2A12 OS=Mus musculus GN=Cy... 42 0.001 sp|P20853|CP2A7_HUMAN Cytochrome P450 2A7 OS=Homo sapiens GN=CYP... 42 0.002 sp|O24312|TCMO_POPTM Trans-cinnamate 4-monooxygenase OS=Populus ... 41 0.003 sp|P24455|CP2A9_MESAU Cytochrome P450 2A9 OS=Mesocricetus auratu... 41 0.003 sp|Q43054|TCMO_POPKI Trans-cinnamate 4-monooxygenase OS=Populus ... 40 0.004 sp|P92994|TCMO_ARATH Trans-cinnamate 4-monooxygenase OS=Arabidop... 40 0.004 sp|P05179|CP2C7_RAT Cytochrome P450 2C7 OS=Rattus norvegicus GN=... 40 0.004 sp|P15392|CP2A4_MOUSE Cytochrome P450 2A4 OS=Mus musculus GN=Cyp... 40 0.004 sp|P20812|CP2A3_RAT Cytochrome P450 2A3 OS=Rattus norvegicus GN=... 40 0.004 sp|Q42600|C84A1_ARATH Cytochrome P450 84A1 OS=Arabidopsis thalia... 40 0.004 sp|O81974|C71D8_SOYBN Cytochrome P450 71D8 OS=Glycine max GN=CYP... 40 0.004 sp|Q16696|CP2AD_HUMAN Cytochrome P450 2A13 OS=Homo sapiens GN=CY... 40 0.005 sp|P20852|CP2A5_MOUSE Cytochrome P450 2A5 OS=Mus musculus GN=Cyp... 40 0.005 sp|O64900|C80B2_ESCCA (S)-N-methylcoclaurine 3'-hydroxylase isoz... 40 0.005 sp|Q43240|TCMO_ZINEL Trans-cinnamate 4-monooxygenase OS=Zinnia e... 40 0.006 sp|Q9DBX6|CP2S1_MOUSE Cytochrome P450 2S1 OS=Mus musculus GN=Cyp... 40 0.006 sp|Q05556|CP2AB_RABIT Cytochrome P450 2A11 OS=Oryctolagus cunicu... 40 0.006 sp|Q05555|CP2AA_RABIT Cytochrome P450 2A10 OS=Oryctolagus cunicu... 40 0.006 sp|P56656|CP239_MOUSE Cytochrome P450 2C39 OS=Mus musculus GN=Cy... 40 0.006 sp|P56655|CP238_MOUSE Cytochrome P450 2C38 OS=Mus musculus GN=Cy... 40 0.006 sp|Q7Z449|CP2U1_HUMAN Cytochrome P450 2U1 OS=Homo sapiens GN=CYP... 39 0.008 sp|Q96SQ9|CP2S1_HUMAN Cytochrome P450 2S1 OS=Homo sapiens GN=CYP... 39 0.008 sp|Q9MZY0|CP2E1_CANFA Cytochrome P450 2E1 OS=Canis familiaris GN... 39 0.008 sp|P11711|CP2A1_RAT Cytochrome P450 2A1 OS=Rattus norvegicus GN=... 39 0.008 sp|O22203|C98A3_ARATH Cytochrome P450 98A3 OS=Arabidopsis thalia... 39 0.008 sp|O48922|C98A2_SOYBN Cytochrome P450 98A2 OS=Glycine max GN=CYP... 39 0.008 sp|O64899|C80B1_ESCCA (S)-N-methylcoclaurine 3'-hydroxylase isoz... 39 0.008
>sp|Q04468|TCMO_HELTU Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1 Length = 505
Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/50 (46%), Positives = 31/50 (62%) Frame = +1
Query: 310 IVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQLRSGLTPSNL 459 +V A+IGA+L+ K L+ + KLPPGP PI GN+LQ+ L NL Sbjct: 10 LVALFAAIIGAILISK-LRGKKFKLPPGPIPVPIFGNWLQVGDDLNHRNL 58
>sp|Q29510|CP2CU_RABIT Cytochrome P450 2C30 OS=Oryctolagus cuniculus GN=CYP2C30 PE=2 SV=1 Length = 489
Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 2/39 (5%) Frame = +1
Query: 322 LVALIGALLLVKFLQR--ARVKLPPGPFAWPIVGNFLQL 432 LV + LLLV L++ AR KLPPGP A+P+VGN LQL Sbjct: 7 LVICLSCLLLVSLLKQSYARRKLPPGPTAFPLVGNVLQL 45
>sp|P37124|C77A2_SOLME Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1 Length = 511
Score = 42.4 bits (98), Expect = 0.001 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 9/59 (15%) Frame = +1
Query: 292 FSASSL------IVTSLVALIGALL--LVKFLQRARVKLPPGPFAWPIVGNFLQL-RSG 441 FS SSL I T L +I +++ L K + ++KLPPGP WP+VGN LQ+ RSG Sbjct: 4 FSTSSLSSYYHLIFTILAFVISSIIYFLSKKAESKKLKLPPGPPGWPVVGNLLQVARSG 62
>sp|P56593|CP2AC_MOUSE Cytochrome P450 2A12 OS=Mus musculus GN=Cyp2a12 PE=1 SV=1 Length = 492
Score = 42.0 bits (97), Expect = 0.001 Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Frame = +1
Query: 301 SSLIVTSLVALIGALLLVK-FLQRARVKLPPGPFAWPIVGNFLQL 432 S L++ +++A + ++LV + Q+ R KLPPGP P +GN+LQL Sbjct: 4 SGLLLLAILAFLSVMVLVSVWQQKIRGKLPPGPIPLPFIGNYLQL 48
>sp|P20853|CP2A7_HUMAN Cytochrome P450 2A7 OS=Homo sapiens GN=CYP2A7 PE=2 SV=2 Length = 494
Score = 41.6 bits (96), Expect = 0.002 Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%) Frame = +1
Query: 298 ASSLIVTSLVALIGALLLVKFLQ--RARVKLPPGPFAWPIVGNFLQLRS 438 AS L++ +L+A + ++L+ Q ++R KLPPGP P +GN+LQL + Sbjct: 3 ASGLLLVALLACLTVMVLMSVWQQRKSRGKLPPGPTPLPFIGNYLQLNT 51
>sp|O24312|TCMO_POPTM Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1 Length = 505
Score = 40.8 bits (94), Expect = 0.003 Identities = 22/50 (44%), Positives = 32/50 (64%) Frame = +1
Query: 310 IVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQLRSGLTPSNL 459 ++ S VA++ A+L+ K L+ R KLPPGP P+ GN+LQ+ L NL Sbjct: 10 LLGSFVAILVAILVSK-LRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNL 58
>sp|P24455|CP2A9_MESAU Cytochrome P450 2A9 OS=Mesocricetus auratus GN=CYP2A9 PE=2 SV=2 Length = 493
Score = 40.8 bits (94), Expect = 0.003 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Frame = +1
Query: 301 SSLIVTSLVALIGALLLV-KFLQRARVKLPPGPFAWPIVGNFLQLRS 438 S LI+ +++A + ++LV + Q+ R KLPPGP P +GN+LQL + Sbjct: 4 SGLILVAILAYLSVMVLVFVWKQKFRGKLPPGPTPLPYIGNYLQLNT 50
>sp|Q43054|TCMO_POPKI Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1 Length = 505
Score = 40.4 bits (93), Expect = 0.004 Identities = 22/50 (44%), Positives = 32/50 (64%) Frame = +1
Query: 310 IVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQLRSGLTPSNL 459 ++ S VA++ A+L+ K L+ R KLPPGP P+ GN+LQ+ L NL Sbjct: 10 LLGSFVAVLVAILVSK-LRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNL 58
>sp|P92994|TCMO_ARATH Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1 Length = 505
Score = 40.4 bits (93), Expect = 0.004 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Frame = +1
Query: 307 LIVTSLVALIGALLLVKFLQRAR---VKLPPGPFAWPIVGNFLQLRSGLTPSNL 459 L+ SL+A+ A++L + + R +KLPPGP PI GN+LQ+ L NL Sbjct: 5 LLEKSLIAVFVAVILATVISKLRGKKLKLPPGPIPIPIFGNWLQVGDDLNHRNL 58
>sp|P05179|CP2C7_RAT Cytochrome P450 2C7 OS=Rattus norvegicus GN=Cyp2c7 PE=1 SV=2 Length = 490
Score = 40.4 bits (93), Expect = 0.004 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%) Frame = +1
Query: 310 IVTSLVALIGALLLVKFLQRA--RVKLPPGPFAWPIVGNFLQL 432 +VT LV + +L+L+ +++ R KLPPGP PI+GNFLQ+ Sbjct: 3 LVTFLVLTLSSLILLSLWRQSSRRRKLPPGPTPLPIIGNFLQI 45
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5IDU6 |
Definition |
tr|Q5IDU6|Q5IDU6_PINTA Coumarate 3-hydroxylase (Fragment) OS=Pinus taeda |
Align length |
42 |
Score (bit) |
47.8 |
E-value |
0.0003 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953469|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_N15, 5' (459 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q5IDU6|Q5IDU6_PINTA Coumarate 3-hydroxylase (Fragment) OS=Pin... 48 3e-04 tr|B0ZR86|B0ZR86_PINTA Coumarate-3-hydroxylase (Fragment) OS=Pin... 48 3e-04 tr|Q5IDC3|Q5IDC3_PINTA Cinnamate 4-hydroxylase (Fragment) OS=Pin... 47 4e-04 tr|Q5IDB7|Q5IDB7_PINTA Cinnamate 4-hydroxylase (Fragment) OS=Pin... 47 4e-04 tr|Q5IDB4|Q5IDB4_PINTA Cinnamate 4-hydroxylase (Fragment) OS=Pin... 47 4e-04 tr|Q5ID78|Q5ID78_PINTA Cinnamate 4-hydroxylase (Fragment) OS=Pin... 47 4e-04 tr|Q8VZH6|Q8VZH6_PINTA P-coumarate 3-hydroxylase OS=Pinus taeda ... 47 6e-04 tr|Q5IDV8|Q5IDV8_PINTA Coumarate 3-hydroxylase (Fragment) OS=Pin... 47 6e-04 tr|B0ZRB1|B0ZRB1_PINTA Coumarate-3-hydroxylase (Fragment) OS=Pin... 47 6e-04 tr|B0ZR87|B0ZR87_PINTA Coumarate-3-hydroxylase (Fragment) OS=Pin... 47 6e-04 tr|A9TRJ0|A9TRJ0_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.001 tr|B0ZR89|B0ZR89_PINTA Coumarate-3-hydroxylase (Fragment) OS=Pin... 45 0.002 tr|B8LQZ6|B8LQZ6_PICSI Putative uncharacterized protein OS=Picea... 44 0.004 tr|A7PTC8|A7PTC8_VITVI Chromosome chr8 scaffold_29, whole genome... 44 0.004 tr|Q42959|Q42959_TOBAC Cytochrome P450 OS=Nicotiana tabacum GN=h... 44 0.005 tr|A8PAL8|A8PAL8_COPC7 Putative uncharacterized protein OS=Copri... 44 0.005 tr|Q9LZ31|Q9LZ31_ARATH Cytochrom P450-like protein OS=Arabidopsi... 43 0.007 tr|Q3L2Q3|Q3L2Q3_GINBI Cinnamic acid 4-hydroxylase OS=Ginkgo bil... 43 0.007 tr|B2Z6P3|B2Z6P3_POPTR Coumaroyl 3-hydroxylase OS=Populus tricho... 43 0.007 tr|B0LXE6|B0LXE6_9ROSI p-coumaryl-CoA 3'-hydroxylase OS=Populus ... 43 0.007 tr|A9ZT63|A9ZT63_COPJA Cytochrome P450 OS=Coptis japonica var. d... 43 0.007 tr|B2RXZ2|B2RXZ2_MOUSE Cyp2a22 protein (MCG118150) OS=Mus muscul... 42 0.012 tr|Q9LF95|Q9LF95_ARATH Cytochrome P450-like protein OS=Arabidops... 42 0.012 tr|Q8L9A1|Q8L9A1_ARATH Cytochrom P450-like protein OS=Arabidopsi... 42 0.012 tr|Q8GXT5|Q8GXT5_ARATH Putative cytochrome P450 OS=Arabidopsis t... 42 0.012 tr|Q2MJ10|Q2MJ10_MEDTR Cytochrome P450 monooxygenase CYP98A37 OS... 42 0.012 tr|A9T5I0|A9T5I0_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.012 tr|Q5U396|Q5U396_DANRE Novel protein (Zgc:92205) OS=Danio rerio ... 42 0.015 tr|Q8VCW9|Q8VCW9_MOUSE Cytochrome P450, family 2, subfamily a, p... 42 0.015 tr|B6PX79|B6PX79_BRAFL Putative uncharacterized protein OS=Branc... 42 0.015
>tr|Q5IDU6|Q5IDU6_PINTA Coumarate 3-hydroxylase (Fragment) OS=Pinus taeda PE=4 SV=1 Length = 163
Score = 47.8 bits (112), Expect = 3e-04 Identities = 22/42 (52%), Positives = 30/42 (71%) Frame = +1
Query: 307 LIVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQL 432 ++VT +VA+ ++ K LQR R KLPPGP WP+VGN LQ+ Sbjct: 7 VVVTGIVAIA---IVYKLLQRWRFKLPPGPRPWPVVGNLLQI 45
>tr|B0ZR86|B0ZR86_PINTA Coumarate-3-hydroxylase (Fragment) OS=Pinus taeda GN=C3H PE=4 SV=1 Length = 167
Score = 47.8 bits (112), Expect = 3e-04 Identities = 22/42 (52%), Positives = 30/42 (71%) Frame = +1
Query: 307 LIVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQL 432 ++VT +VA+ ++ K LQR R KLPPGP WP+VGN LQ+ Sbjct: 11 VVVTGIVAIA---IVYKLLQRWRFKLPPGPRPWPVVGNLLQI 49
>tr|Q5IDC3|Q5IDC3_PINTA Cinnamate 4-hydroxylase (Fragment) OS=Pinus taeda PE=4 SV=1 Length = 144
Score = 47.4 bits (111), Expect = 4e-04 Identities = 24/50 (48%), Positives = 35/50 (70%) Frame = +1
Query: 310 IVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQLRSGLTPSNL 459 ++ LV ++GA+L+ K L+ ++KLPPGPFA PI GN+LQ+ L NL Sbjct: 17 LIALLVVVVGAVLVNK-LRGRKLKLPPGPFALPIFGNWLQVGDDLNHRNL 65
>tr|Q5IDB7|Q5IDB7_PINTA Cinnamate 4-hydroxylase (Fragment) OS=Pinus taeda PE=4 SV=1 Length = 144
Score = 47.4 bits (111), Expect = 4e-04 Identities = 24/50 (48%), Positives = 35/50 (70%) Frame = +1
Query: 310 IVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQLRSGLTPSNL 459 ++ LV ++GA+L+ K L+ ++KLPPGPFA PI GN+LQ+ L NL Sbjct: 17 LIALLVVVVGAVLVNK-LRGRKLKLPPGPFALPIFGNWLQVGDDLNHRNL 65
>tr|Q5IDB4|Q5IDB4_PINTA Cinnamate 4-hydroxylase (Fragment) OS=Pinus taeda PE=4 SV=1 Length = 144
Score = 47.4 bits (111), Expect = 4e-04 Identities = 24/50 (48%), Positives = 35/50 (70%) Frame = +1
Query: 310 IVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQLRSGLTPSNL 459 ++ LV ++GA+L+ K L+ ++KLPPGPFA PI GN+LQ+ L NL Sbjct: 17 LIALLVVVVGAVLVNK-LRGRKLKLPPGPFALPIFGNWLQVGDDLNHRNL 65
>tr|Q5ID78|Q5ID78_PINTA Cinnamate 4-hydroxylase (Fragment) OS=Pinus taeda PE=4 SV=1 Length = 144
Score = 47.4 bits (111), Expect = 4e-04 Identities = 24/50 (48%), Positives = 35/50 (70%) Frame = +1
Query: 310 IVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQLRSGLTPSNL 459 ++ LV ++GA+L+ K L+ ++KLPPGPFA PI GN+LQ+ L NL Sbjct: 17 LIALLVVVVGAVLVNK-LRGRKLKLPPGPFALPIFGNWLQVGDDLNHRNL 65
>tr|Q8VZH6|Q8VZH6_PINTA P-coumarate 3-hydroxylase OS=Pinus taeda PE=2 SV=1 Length = 512
Score = 46.6 bits (109), Expect = 6e-04 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = +1
Query: 307 LIVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQL 432 ++VT +VA+ ++ K +QR R KLPPGP WP+VGN LQ+ Sbjct: 11 VVVTGIVAIA---IVYKLVQRWRFKLPPGPRPWPVVGNLLQI 49
>tr|Q5IDV8|Q5IDV8_PINTA Coumarate 3-hydroxylase (Fragment) OS=Pinus taeda PE=4 SV=1 Length = 163
Score = 46.6 bits (109), Expect = 6e-04 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = +1
Query: 307 LIVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQL 432 ++VT +VA+ ++ K +QR R KLPPGP WP+VGN LQ+ Sbjct: 7 VVVTGIVAIA---IVYKLVQRWRFKLPPGPRPWPVVGNLLQI 45
>tr|B0ZRB1|B0ZRB1_PINTA Coumarate-3-hydroxylase (Fragment) OS=Pinus taeda GN=C3H PE=4 SV=1 Length = 165
Score = 46.6 bits (109), Expect = 6e-04 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = +1
Query: 307 LIVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQL 432 ++VT +VA+ ++ K +QR R KLPPGP WP+VGN LQ+ Sbjct: 9 VVVTGIVAIA---IVYKLVQRWRFKLPPGPRPWPVVGNLLQI 47
>tr|B0ZR87|B0ZR87_PINTA Coumarate-3-hydroxylase (Fragment) OS=Pinus taeda GN=C3H PE=4 SV=1 Length = 167
Score = 46.6 bits (109), Expect = 6e-04 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = +1
Query: 307 LIVTSLVALIGALLLVKFLQRARVKLPPGPFAWPIVGNFLQL 432 ++VT +VA+ ++ K +QR R KLPPGP WP+VGN LQ+ Sbjct: 11 VVVTGIVAIA---IVYKLVQRWRFKLPPGPRPWPVVGNLLQI 49
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