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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953476
Clone id TST39A01NGRL0017_N22
Library
Length 591
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_N22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGTTGTTGCCAGGCTGCCCTCTTTGCATCCCCCGCACCACACCCTGCCTACCCCTCCACA
CACACAGGCAAAGCGCATACACATACAGGACATACAGGCAACGTCACTCACAAACCAACC
CTTTGCCTCTACCAAGCTTTCGCAGGCCTGCCTTTGTTTGCTTCGTCTGCACAAAACGCC
CTCATAGATCGTGTGCCCATTTCCCTTCTTTGGTCCTTTTTCTCGCTTCTCTAATGTTGC
CTCCGGACCAGCACCCTCCCATGCGTCTCCGATCTGCAATGCTCTGCACCAAGTGCTGCC
GTCTTTCCTCCTCTCTCGTCCCCTCTGCCACCTTCTCCGCCCCCCTCAGAAGGCTCAATG
CCTTCTTCAAGATGAAGGGAGCCCGGAAGTGAAGGAGCTCCCCTCCTTCCCAAGCGGTTC
CCTTCCCCTCTGTGCGCAGCTCGACAAGGGTTTTCTGTCAGTGGCGTCACAGTTATCTTC
AACAACAGGGTTCTACAGGTATTTTGTTCACAAATCCGCCCATCAGGACTCCTTGTTATC
TCCACCATGAATGGAAAGATGCTGTTCACAATGGCGAGATCTGCATCAATT
■■Homology search results ■■ -
sp_hit_id A8AFL6
Definition sp|A8AFL6|RSMF_CITK8 Ribosomal RNA small subunit methyltransferase F OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Align length 95
Score (bit) 33.5
E-value 0.81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953476|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_N22, 5'
         (591 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8AFL6|RSMF_CITK8 Ribosomal RNA small subunit methyltransfera...    33   0.81 
sp|A4WBJ4|RSMF_ENT38 Ribosomal RNA small subunit methyltransfera...    33   1.1  
sp|Q9CUB6|OTUD1_MOUSE OTU domain-containing protein 1 OS=Mus mus...    32   2.4  
sp|Q5KSL6|DGKK_HUMAN Diacylglycerol kinase kappa OS=Homo sapiens...    32   2.4  
sp|Q9UIH9|KLF15_HUMAN Krueppel-like factor 15 OS=Homo sapiens GN...    32   3.1  
sp|Q70E73|RAPH1_HUMAN Ras-associated and pleckstrin homology dom...    30   9.0  

>sp|A8AFL6|RSMF_CITK8 Ribosomal RNA small subunit methyltransferase
           F OS=Citrobacter koseri (strain ATCC BAA-895 / CDC
           4225-83 / SGSC4696) GN=rsmF PE=3 SV=1
          Length = 479

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = +2

Query: 272 ICNALHQVLPSFLLSRPLCHLLRPPQKAQCLLQDEGSPEVKE-LP---SFPSGSLPLCAQ 439
           I +A H + P   L    C L R   ++ CL   E  PE  E LP    FP     L A+
Sbjct: 229 IDSAFHALRPGGTLVYSTCTLNREENESVCLWLKETYPEAVEFLPLGDLFPGAERALTAE 288

Query: 440 LDKGFLSVASQLSSTTGFYRYFVHKSAHQDSLLSP 544
              GFL V  Q+    GF+   + K+A    L +P
Sbjct: 289 ---GFLHVFPQIYDCEGFFVARLRKTAAIPPLPAP 320


>sp|A4WBJ4|RSMF_ENT38 Ribosomal RNA small subunit methyltransferase
           F OS=Enterobacter sp. (strain 638) GN=rsmF PE=3 SV=1
          Length = 480

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
 Frame = +2

Query: 272 ICNALHQVLPSFLLSRPLCHLLRPPQKAQCLLQDEGSPEVKE-LPS---FPSGSLPLCAQ 439
           I +A H + P  +L    C L R   ++ CL   E  P+  E LP    FPS +    A 
Sbjct: 229 IDSAFHALRPGGMLVYSTCTLNRDENESVCLWLKEQYPQAVEFLPLDSLFPSATE---AV 285

Query: 440 LDKGFLSVASQLSSTTGFYRYFVHKSAHQDSLLSP 544
             +GFL V  Q+    GF+   + K+A  + L +P
Sbjct: 286 TPEGFLHVFPQIFDCEGFFVARMRKTAVIEPLPAP 320


>sp|Q9CUB6|OTUD1_MOUSE OTU domain-containing protein 1 OS=Mus
           musculus GN=Otud1 PE=2 SV=2
          Length = 454

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
 Frame = +3

Query: 168 CTKRP----HRSCAHFPSLVLFLASLMLPPDQ--HPPMRLRSAMLCTKCCRLSSSLVPSA 329
           C+K P      S AH     L    L+LPP     PP R  SA L  +  R      P+A
Sbjct: 89  CSKPPLPPHFTSTAHIAVRALGAERLLLPPPSAPSPPRRGSSAWLLEELLRPDEPAAPNA 148

Query: 330 TFSAPLR--RLNAFFKMKGARK*RSSPPSQAVPFP 428
              AP R  RL+   +   A + R+  P+   P P
Sbjct: 149 VRDAPDRNFRLSEHRQALAASQHRAPAPAPVGPEP 183


>sp|Q5KSL6|DGKK_HUMAN Diacylglycerol kinase kappa OS=Homo sapiens
           GN=DGKK PE=1 SV=1
          Length = 1271

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 78  YTYRTYRQRHSQTNPLPLPSFRRPAFVCFVCTKRPHRSCA 197
           Y+  ++R +H       +P+  R A +C VC  + HR CA
Sbjct: 331 YSSYSHRTQHCNVCRESIPALSRDAIICEVCKVKSHRLCA 370


>sp|Q9UIH9|KLF15_HUMAN Krueppel-like factor 15 OS=Homo sapiens
           GN=KLF15 PE=1 SV=1
          Length = 416

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +2

Query: 236 VASGPAPSHASPICNALHQVLPSFLLSRPLCHLLRPPQ----KAQCLLQDEGSPEVKELP 403
           VA GP    A+P+    H  LP F L  P   + RP Q    + +  L++   P VKE+P
Sbjct: 103 VAWGPWRRAAAPV-KGEHFCLPEFPLGDP-DDVPRPFQPTLEEIEEFLEENMEPGVKEVP 160

Query: 404 SFPSGSLPLCAQLDKG 451
              S  L  C+QL  G
Sbjct: 161 EGNSKDLDACSQLSAG 176


>sp|Q70E73|RAPH1_HUMAN Ras-associated and pleckstrin homology
            domains-containing protein 1 OS=Homo sapiens GN=RAPH1
            PE=1 SV=3
          Length = 1250

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 25/78 (32%), Positives = 34/78 (43%)
 Frame = +3

Query: 30   PRTTPCLPLHTHRQSAYTYRTYRQRHSQTNPLPLPSFRRPAFVCFVCTKRPHRSCAHFPS 209
            P  TP +P    +Q A+   +Y      T P+P+P    P    F C K P    +  PS
Sbjct: 804  PTPTPPVP-PAKKQPAFP-ASYIPPSPPTPPVPVPPPTLPKQQSF-CAKPPPSPLSPVPS 860

Query: 210  LVLFLASLMLPPDQHPPM 263
            +V  +AS   PP   P M
Sbjct: 861  VVKQIASQFPPPPTPPAM 878
tr_hit_id B2B5U6
Definition tr|B2B5U6|B2B5U6_PODAN Predicted CDS Pa_2_5800 OS=Podospora anserina
Align length 94
Score (bit) 36.2
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953476|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_N22, 5'
         (591 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2B5U6|B2B5U6_PODAN Predicted CDS Pa_2_5800 OS=Podospora anse...    36   1.4  
tr|A0JT75|A0JT75_ARTS2 Transcriptional regulator, XRE family wit...    36   1.9  
tr|A9YPK7|A9YPK7_9TELE NMDA receptor NR2C subunit OS=Apteronotus...    35   3.2  
tr|A9D3C0|A9D3C0_9GAMM Putative uncharacterized protein OS=Shewa...    35   4.1  
tr|B6KE75|B6KE75_TOXGO Putative uncharacterized protein OS=Toxop...    34   5.4  
tr|Q8TET9|Q8TET9_HUMAN FLJ00072 protein (Fragment) OS=Homo sapie...    34   5.4  
tr|A4I227|A4I227_LEIIN Protein kinase, putative OS=Leishmania in...    34   7.1  
tr|A1R3N1|A1R3N1_ARTAT Putative Helix-turn-helix domain protein ...    34   7.2  
tr|Q7ZRI0|Q7ZRI0_SIVCZ Envelope glycoprotein (Fragment) OS=Simia...    33   9.2  
tr|A4AN40|A4AN40_9FLAO Arylsulfatase A (Precursor) OS=Flavobacte...    33   9.2  
tr|B8HDF5|B8HDF5_9MICC Transcriptional regulator, XRE family OS=...    33   9.4  
tr|A4QUL4|A4QUL4_MAGGR Putative uncharacterized protein OS=Magna...    33   9.4  

>tr|B2B5U6|B2B5U6_PODAN Predicted CDS Pa_2_5800 OS=Podospora
           anserina PE=4 SV=1
          Length = 706

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 31/94 (32%), Positives = 43/94 (45%)
 Frame = +3

Query: 204 PSLVLFLASLMLPPDQHPPMRLRSAMLCTKCCRLSSSLVPSATFSAPLRRLNAFFKMKGA 383
           PSLV   ++   PP Q+PP  + SA+  +    L  S  PS  +  P  R + F+     
Sbjct: 469 PSLVSKFSTAHQPPQQYPPSHIASALSSS----LPQSTAPSLDWIPPSER-SLFYPYS-- 521

Query: 384 RK*RSSPPSQAVPFPSVRSSTRVFCQWRHSYLQQ 485
               S PPS     P  +SS+R   Q +HSY  Q
Sbjct: 522 ---YSKPPS-----PPKKSSSRRRSQSQHSYPSQ 547


>tr|A0JT75|A0JT75_ARTS2 Transcriptional regulator, XRE family with
           cupin sensor OS=Arthrobacter sp. (strain FB24)
           GN=Arth_0847 PE=4 SV=1
          Length = 191

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = -1

Query: 294 TWCRALQIGDAWEGAGPEATLEKREKGPKKG-NGHTIYEGVLCRRSKQR-QACESLVEAK 121
           T C+ L I      A PE  L K+++GP+    G  I E +L  RS++R Q  ++++E +
Sbjct: 61  TLCQVLSISIGDLFAAPETHLTKKDEGPRISLGGEGIIERLLTARSERRVQIIQAVIEPR 120

Query: 120 GWFVSDVACMSC 85
           G   S++  + C
Sbjct: 121 GRGESELYAVDC 132


>tr|A9YPK7|A9YPK7_9TELE NMDA receptor NR2C subunit OS=Apteronotus
            leptorhynchus GN=GRIN2C PE=2 SV=1
          Length = 1420

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 38/154 (24%), Positives = 56/154 (36%), Gaps = 14/154 (9%)
 Frame = +3

Query: 12   GCPLCIPRTTPCLPLHTHRQSAYTYRTYRQRHSQTNPLPLPSFRRPAFVCFVCTKRPHRS 191
            G  LC         L     S+Y YR  + ++SQ+  LP  S+R          +R   +
Sbjct: 1236 GNNLCYNMAVEPAYLDPAHMSSYPYRPQKLKYSQSTRLP--SYREAILQNAAALRRSSST 1293

Query: 192  CAH---------FPSLVLFLASLMLPPDQH--PPMRLRSAMLCTKCCRLSSSLVPSATFS 338
              H         +  L +++  L   P      P  +   + C   C     LVP     
Sbjct: 1294 VVHRHYSTYLNSYTDLPVYVGPLTQGPAHFYDHPKDICHLLPCVSHCPADVPLVPRLPSR 1353

Query: 339  APLRRLNAFFKMKGARK*RSSPPSQA---VPFPS 431
                + NAF   +GA + R  PP QA   +P PS
Sbjct: 1354 PVTYQNNAFEGYEGAGRSREEPPLQALHTLPAPS 1387


>tr|A9D3C0|A9D3C0_9GAMM Putative uncharacterized protein
           OS=Shewanella benthica KT99 GN=KT99_16354 PE=4 SV=1
          Length = 291

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 4/125 (3%)
 Frame = +3

Query: 144 RPAFVCFVCTKRPHRSCAHFPSLVLFLASLMLPPDQHPPMRLRSAM-LCTKCCRLSSSLV 320
           RP   C +C    H   +  P+L+  L   ML P  HP + LR  +  C   C     LV
Sbjct: 91  RPTNACMLC----HSDVSDKPALMTHLDDKMLVPKTHPRISLRGKLDACISYC----VLV 142

Query: 321 PSATFSAP--LRRLNAFFKMKGARK*RSSPPSQAVPFPSV-RSSTRVFCQWRHSYLQQQG 491
                  P  L+   A  +    +  +S    Q +P PS+   S  V  QW H  L+  G
Sbjct: 143 QCEMVQQPDLLKNFMADIRSYLGQILQSEVTGQPLPEPSLGEFSAAVIHQWSHHPLKYLG 202

Query: 492 STGIL 506
              +L
Sbjct: 203 HDHML 207


>tr|B6KE75|B6KE75_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_024740 PE=4 SV=1
          Length = 406

 Score = 34.3 bits (77), Expect = 5.4
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
 Frame = -3

Query: 430 EGKGTAWEGGELLHFRAPFILKKALSLLRGAEKVAEGTR-------------EEERRQHL 290
           E +G A    E     AP  LKK  +     EK+ E  R             EE  R+H 
Sbjct: 267 EAEGAAKRAREEWMLEAPAYLKKTFATNSKMEKIMEQKRREDAEAEQMRAAMEEWNRKHR 326

Query: 289 VQSIADRRRMGGCWSGGNIREARKRTKEGKWAHDL*GR 176
            +S+ +    G    G   RE  K+ K+  WA +L G+
Sbjct: 327 AKSLREMAETGEVEDG---REMYKKWKQAMWAQNLWGK 361


>tr|Q8TET9|Q8TET9_HUMAN FLJ00072 protein (Fragment) OS=Homo sapiens
           GN=PDLIM2 PE=2 SV=1
          Length = 204

 Score = 34.3 bits (77), Expect = 5.4
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 204 PSLVLFLASLML-PPDQHPPMRLRSAMLCTK---CCRLSSSLVPSATFSAPLRRLN-AFF 368
           PS V +  +L L PP   PP R  SA L T+   CCRL  +LVP    ++  RR+    +
Sbjct: 100 PSWVCWPKALALTPPRLPPPNRPASAALATRRCWCCRLPRALVPPGPGTSRPRRVGLGSW 159

Query: 369 KMKGARK*RSSPPSQAVP 422
           K    R+    P    VP
Sbjct: 160 KAGRGRRETGFPERDGVP 177


>tr|A4I227|A4I227_LEIIN Protein kinase, putative OS=Leishmania
           infantum GN=LinJ26.0940 PE=4 SV=1
          Length = 1395

 Score = 33.9 bits (76), Expect = 7.1
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
 Frame = +3

Query: 9   PGCPLC--IPRTTPCLPLHTHRQSAYTYRTYRQRHSQTNPLPLPS--------FRRPAFV 158
           PG PL   +   TP   ++ + +++  YR++   HS+      PS        +   + +
Sbjct: 67  PGSPLMYTVCPATPDRSMNPYDRASPLYRSHASPHSRLGDSASPSSAMTEAGMYESNSDL 126

Query: 159 CFVCTKRPHRSCAHFPSLVLFLASLMLPPDQHPPMRLRSAMLCTKCCRLSSSLVPSATFS 338
             VC    +R  A  PSL   +AS  L     PP++  S    ++C +  +S+  + ++S
Sbjct: 127 SAVCPTWFNRCAASSPSLSSVMASRHL-----PPLQAHSPDPQSRCPQPFNSIAAAVSYS 181

Query: 339 APL 347
           +PL
Sbjct: 182 SPL 184


>tr|A1R3N1|A1R3N1_ARTAT Putative Helix-turn-helix domain protein
           OS=Arthrobacter aurescens (strain TC1) GN=AAur_1055 PE=4
           SV=1
          Length = 191

 Score = 33.9 bits (76), Expect = 7.2
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -1

Query: 294 TWCRALQIGDAWEGAGPEATLEKREKGPKKG-NGHTIYEGVLCRRSKQR-QACESLVEAK 121
           T C+ L +      A PE  L KR+ GP+    G  I E +L  RS++R Q  ++ +E +
Sbjct: 61  TLCQVLSVSVGDLFAAPETHLTKRDDGPRISLGGQGIVERLLTARSERRLQILQATIEPR 120

Query: 120 GWFVSDVACMSC 85
           G   +++  + C
Sbjct: 121 GRGENELYAVDC 132


>tr|Q7ZRI0|Q7ZRI0_SIVCZ Envelope glycoprotein (Fragment) OS=Simian
           immunodeficiency virus (isolate CPZ GAB1) GN=env PE=4
           SV=1
          Length = 373

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -3

Query: 286 QSIADRRRMGGCWSGGNIREARKRTKE 206
           QSI DR R   CW GGN +EA K  K+
Sbjct: 219 QSINDRPRQAWCWFGGNWKEAIKEMKQ 245


>tr|A4AN40|A4AN40_9FLAO Arylsulfatase A (Precursor)
           OS=Flavobacteriales bacterium HTCC2170 GN=FB2170_03975
           PE=4 SV=1
          Length = 489

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 17/30 (56%), Positives = 19/30 (63%)
 Frame = -3

Query: 430 EGKGTAWEGGELLHFRAPFILKKALSLLRG 341
           EGKGTAWEGG+    R PFI+K    L  G
Sbjct: 307 EGKGTAWEGGQ----REPFIMKYPNKLKAG 332