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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953491
Clone id TST39A01NGRL0017_O13
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_O13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACAACTGTTTCTCGAGTCGAAGATTGTTTTTCAACACTTTTATGGGCTTGTAGACGATG
CCCTCAATGGCTGTCGATGCTGGGTTTTCCTCTCTTCCATTTGCCCCTTTGCCTCACCTC
TCAGAAAGAATCTCCCGCGGGCGCCCATCTAAGCTCTTTCGGGCAATTGATGGCGGAATT
GCCCACGACAAGCTTTCAAAGGAGAAACTGAATTGCACAGGTGGTATTAGTGAGGAGCCG
AGAACCAGCACAATTCTGGAATGTTCTGAGCATCACCGGAAAGAGGATGGAAGTTCTCCT
TCTTGGTTCAAATTGGCTAGCCAGCTGGTGCCGGTTGCTACACAAGGCGAAGCTTCAGCT
TGCTTTGTTACAGCTTCAACTATAGATGGCACAAATGAATATCAATGGAGCCCTTTTTGT
TACATCCTCTGCTCTGATGATGCAGCCAATGAGGTGCCTCTTGGAAATGTTTGTGGGGCT
AGTGCCACTGCTGCAGTTCAATCTACTCCTCCTCCTAAGCAGAAGCAAGAGG
■■Homology search results ■■ -
sp_hit_id P32114
Definition sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus
Align length 72
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953491|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_O13, 5'
         (532 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus GN...    32   1.5  
sp|P08637|FCG3A_HUMAN Low affinity immunoglobulin gamma Fc regio...    31   3.3  
sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens GN...    31   4.3  
sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus...    28   5.0  
sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo s...    30   7.3  
sp|Q8U8L4|GLGB_AGRT5 1,4-alpha-glucan-branching enzyme OS=Agroba...    30   9.5  

>sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus
           GN=Pax2 PE=1 SV=2
          Length = 414

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +1

Query: 187 DKLSKEKLNCTGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACF 366
           D  ++++L     + E P    + + SEH + E G+  S   L   L  V +   ASA  
Sbjct: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANP 312

Query: 367 VTASTIDGTNEY 402
              S + GT  Y
Sbjct: 313 ELGSNVSGTQTY 324


>sp|P08637|FCG3A_HUMAN Low affinity immunoglobulin gamma Fc region
           receptor III-A OS=Homo sapiens GN=FCGR3A PE=2 SV=2
          Length = 254

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = +1

Query: 241 RTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTASTIDGTNEYQWSPFC 420
           + S  L+C   +  ED S+  WF   S +       +AS+ F+ A+T+D + EY+     
Sbjct: 40  KDSVTLKCQGAYSPEDNST-QWFHNESLI-----SSQASSYFIDAATVDDSGEYRCQTNL 93

Query: 421 YILCSDDAANEVPLG 465
             L SD    EV +G
Sbjct: 94  STL-SDPVQLEVHIG 107


>sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens
           GN=PAX2 PE=1 SV=4
          Length = 417

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +1

Query: 187 DKLSKEKLNCTGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACF 366
           D  ++++L     + E P    + + SEH + E G+  S   L   L  V +   AS   
Sbjct: 254 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNP 313

Query: 367 VTASTIDGTNEY 402
              S + GT  Y
Sbjct: 314 ELGSNVSGTQTY 325


>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus
           GN=Prkcsh PE=1 SV=1
          Length = 521

 Score = 28.1 bits (61), Expect(2) = 5.0
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = +1

Query: 148 SKLFRAIDGG--IAHDKLSKEKLNCTGGISEEPRTSTILECSEHHRKEDGSSPSWFKLAS 321
           SK F  +DG   I  D+++ +  +C  G S+EP T+     S  H    G  P +  L+S
Sbjct: 34  SKPFTCLDGTATIPFDQVNDDYCDCKDG-SDEPGTAACPNGS-FHCTNTGYKPLYI-LSS 90

Query: 322 QLVPVATQGEASACFVTASTIDGTNEYQWSPFCYILCSDDAANE 453
           ++      G    C       DGT+EY     C   C +    E
Sbjct: 91  RV----NDGVCDCC-------DGTDEYNSGTVCENTCREKGRKE 123



 Score = 21.2 bits (43), Expect(2) = 5.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 77  MLGFPLFHLPLCLTSQKESPAGAHLSS 157
           ML   L  LPLC   + + P G  LS+
Sbjct: 1   MLLLLLLLLPLCWAVEVKRPRGVSLSN 27


>sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo
           sapiens GN=CD6 PE=1 SV=2
          Length = 668

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 328 VPVATQGEASACFVTASTIDGTNEYQWSPFCYILCSDDAANEVPLGNVCGASATAAVQST 507
           +PV     +S+C   + T++   E  W P C  L    AA  V     CG +  A+  + 
Sbjct: 43  LPVRLTNGSSSC---SGTVEVRLEASWEPACGALWDSRAAEAVCRALGCGGAEAASQLAP 99

Query: 508 PPPK 519
           P P+
Sbjct: 100 PTPE 103


>sp|Q8U8L4|GLGB_AGRT5 1,4-alpha-glucan-branching enzyme
           OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=glgB PE=3 SV=1
          Length = 735

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 277 RKEDGSSPSWFKLASQLVPVAT 342
           R+EDG+  SW +LA+QL+P  T
Sbjct: 269 RREDGTFLSWDELAAQLIPYCT 290
tr_hit_id Q0R4P2
Definition tr|Q0R4P2|Q0R4P2_STRAT ChlB6 OS=Streptomyces antibioticus
Align length 62
Score (bit) 35.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953491|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_O13, 5'
         (532 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0R4P2|Q0R4P2_STRAT ChlB6 OS=Streptomyces antibioticus PE=4 SV=1    35   2.4  
tr|A4HWN3|A4HWN3_LEIIN Phosphomevalonate kinase-like protein OS=...    35   2.4  
tr|Q5BFX3|Q5BFX3_EMENI Putative uncharacterized protein OS=Emeri...    35   2.4  
tr|Q4QF34|Q4QF34_LEIMA Phosphomevalonate kinase-like protein OS=...    34   4.1  
tr|B6QCP8|B6QCP8_PENMA Avl9 protein, putative OS=Penicillium mar...    34   4.1  
tr|Q1AXR6|Q1AXR6_RUBXD Amine oxidase OS=Rubrobacter xylanophilus...    34   5.4  
tr|Q2G2Z5|Q2G2Z5_NOVAD Secretion protein HlyD OS=Novosphingobium...    33   6.9  

>tr|Q0R4P2|Q0R4P2_STRAT ChlB6 OS=Streptomyces antibioticus PE=4 SV=1
          Length = 352

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 346 GEASACFVTASTIDGTNEY-QWSPFCYILCSDDAANEVPLGNVCGASATAAVQSTPPPKQ 522
           G+A+A   TA+ +DG+    +W    Y +   D A  + LG   G +  +AV ST  P+ 
Sbjct: 132 GDATALLTTATMVDGSPTIDRWRSAGYGIAIGDGAGAIVLGRRPGLAEISAVNSTTVPEM 191

Query: 523 KQ 528
           +Q
Sbjct: 192 EQ 193


>tr|A4HWN3|A4HWN3_LEIIN Phosphomevalonate kinase-like protein
           OS=Leishmania infantum GN=LinJ15.1420 PE=3 SV=1
          Length = 458

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = +1

Query: 217 TGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTASTIDGTN 396
           TG  S    T++I+ C  HH   DG S  +    +Q+    TQG+  + F   + + GT 
Sbjct: 159 TGLGSSAAMTTSIVACLCHHFNADGCSHEYVHRIAQIAHSVTQGKIGSGFDVYTAVYGTC 218

Query: 397 EYQWSPFCYILCSDDAA 447
            Y+  P   +    D+A
Sbjct: 219 AYRRFPASRVSMMMDSA 235


>tr|Q5BFX3|Q5BFX3_EMENI Putative uncharacterized protein OS=Emericella
            nidulans GN=AN0557.2 PE=4 SV=1
          Length = 1114

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 17/109 (15%)
 Frame = +1

Query: 67   MAVDAGFSSLPFAPLPHLSERISRGRPSKLFRAIDGGIAHDKL-----------SKEKLN 213
            M+ D+G SS   +PLPH+      G P +  R +  G A   +           + E +N
Sbjct: 694  MSGDSGASSAVSSPLPHMQRSSDSGIPGQRGRYMAVGTATGSVFVWDIRSPTSRNSEIIN 753

Query: 214  CTGGI----SEEPRTSTILECSEH--HRKEDGSSPSWFKLASQLVPVAT 342
                I    +E PR S++   S +  H   DG   +W  LAS   P+ T
Sbjct: 754  SIAPIRIIFTESPRVSSVALTSLYLVHGGNDGLVQAWDPLASTTRPIRT 802


>tr|Q4QF34|Q4QF34_LEIMA Phosphomevalonate kinase-like protein
           OS=Leishmania major GN=LmjF15.1460 PE=3 SV=1
          Length = 459

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 217 TGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTASTIDGTN 396
           TG  S    T++I+ C  HH   DG S  +    +Q+    TQG+  + F   + + GT 
Sbjct: 159 TGLGSSAAMTTSIVACLCHHFNADGCSHEYVHRIAQIAHSVTQGKIGSGFDVYTAVYGTC 218

Query: 397 EYQWSP 414
            Y+  P
Sbjct: 219 AYRRFP 224


>tr|B6QCP8|B6QCP8_PENMA Avl9 protein, putative OS=Penicillium
           marneffei ATCC 18224 GN=PMAA_067990 PE=4 SV=1
          Length = 812

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
 Frame = +1

Query: 226 ISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTAST--IDGTNE 399
           +S   R S++L   +HHR +  S  S  +  S  +P   +G AS+  VT S   +DG  +
Sbjct: 686 MSRRKRWSSVLRMKDHHRSDSDSESSTSRKGSLDIP--RRGSASSTSVTGSNGMVDGIPK 743

Query: 400 YQWSPFCYILCSDDAANEVPLGNVCGASATAAVQSTPPPKQKQE 531
                   ++  DD         +  A A       P P    E
Sbjct: 744 SPLGQRQIVIGDDDTVPTTTTPEIIAAEAEGKGDILPSPASSPE 787


>tr|Q1AXR6|Q1AXR6_RUBXD Amine oxidase OS=Rubrobacter xylanophilus
           (strain DSM 9941 / NBRC 16129) GN=Rxyl_0845 PE=4 SV=1
          Length = 492

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
 Frame = +1

Query: 55  TMPSMAVDAGFSSLPFAPLPHLSERISRGRPSKLFRAIDGGIAHDKLSKEKLNCTGGISE 234
           T P MA + G S L   P+PHL   +  GR    FR    G+  ++   ++    G +  
Sbjct: 355 TDPGMAPEGGDSLLVLVPVPHLGGGVDWGREEAGFRERVYGLLEERCGIDR----GSVLY 410

Query: 235 EPRTSTILECSEHHRKEDGSSPSWFKLASQLV-------PVATQGEASACFVTASTIDGT 393
           E +  T  +  E +  E G++   F L   ++       P+A++      FV AST  GT
Sbjct: 411 E-KVRTPEDWREEYNLEKGAA---FGLGHGILQVGYFRPPLASRSVKGLYFVGASTHPGT 466


>tr|Q2G2Z5|Q2G2Z5_NOVAD Secretion protein HlyD OS=Novosphingobium
           aromaticivorans (strain DSM 12444) GN=Saro_0040 PE=4
           SV=1
          Length = 389

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 22/89 (24%), Positives = 43/89 (48%)
 Frame = -3

Query: 389 PSIVEAVTKQAEASPCVATGTSWLANLNQEGELPSSFR*CSEHSRIVLVLGSSLIPPVQF 210
           P+    +T+ AE    V++G+  L +L ++G++    R        + V  ++ + PV  
Sbjct: 206 PAAGLVLTRAAEPGQIVSSGSGVLFSLARDGQMEMQARLAEADLARLTVGATAEVTPVGT 265

Query: 209 SFSFESLSWAIPPSIARKSLDGRPREILS 123
           +  F    W + P+I ++S +G  R  LS
Sbjct: 266 TRVFNGQVWQLSPTIDQQSREGIARIALS 294