DK953491
Clone id TST39A01NGRL0017_O13
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_O13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CACAACTGTTTCTCGAGTCGAAGATTGTTTTTCAACACTTTTATGGGCTTGTAGACGATG
CCCTCAATGGCTGTCGATGCTGGGTTTTCCTCTCTTCCATTTGCCCCTTTGCCTCACCTC
TCAGAAAGAATCTCCCGCGGGCGCCCATCTAAGCTCTTTCGGGCAATTGATGGCGGAATT
GCCCACGACAAGCTTTCAAAGGAGAAACTGAATTGCACAGGTGGTATTAGTGAGGAGCCG
AGAACCAGCACAATTCTGGAATGTTCTGAGCATCACCGGAAAGAGGATGGAAGTTCTCCT
TCTTGGTTCAAATTGGCTAGCCAGCTGGTGCCGGTTGCTACACAAGGCGAAGCTTCAGCT
TGCTTTGTTACAGCTTCAACTATAGATGGCACAAATGAATATCAATGGAGCCCTTTTTGT
TACATCCTCTGCTCTGATGATGCAGCCAATGAGGTGCCTCTTGGAAATGTTTGTGGGGCT
AGTGCCACTGCTGCAGTTCAATCTACTCCTCCTCCTAAGCAGAAGCAAGAGG
■■Homology search results ■■ -
sp_hit_id P32114
Definition sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus
Align length 72
Score (bit) 32.3
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953491|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_O13, 5'
(532 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus GN... 32 1.5
sp|P08637|FCG3A_HUMAN Low affinity immunoglobulin gamma Fc regio... 31 3.3
sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens GN... 31 4.3
sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus... 28 5.0
sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo s... 30 7.3
sp|Q8U8L4|GLGB_AGRT5 1,4-alpha-glucan-branching enzyme OS=Agroba... 30 9.5

>sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus
GN=Pax2 PE=1 SV=2
Length = 414

Score = 32.3 bits (72), Expect = 1.5
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +1

Query: 187 DKLSKEKLNCTGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACF 366
D ++++L + E P + + SEH + E G+ S L L V + ASA
Sbjct: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANP 312

Query: 367 VTASTIDGTNEY 402
S + GT Y
Sbjct: 313 ELGSNVSGTQTY 324


>sp|P08637|FCG3A_HUMAN Low affinity immunoglobulin gamma Fc region
receptor III-A OS=Homo sapiens GN=FCGR3A PE=2 SV=2
Length = 254

Score = 31.2 bits (69), Expect = 3.3
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +1

Query: 241 RTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTASTIDGTNEYQWSPFC 420
+ S L+C + ED S+ WF S + +AS+ F+ A+T+D + EY+
Sbjct: 40 KDSVTLKCQGAYSPEDNST-QWFHNESLI-----SSQASSYFIDAATVDDSGEYRCQTNL 93

Query: 421 YILCSDDAANEVPLG 465
L SD EV +G
Sbjct: 94 STL-SDPVQLEVHIG 107


>sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens
GN=PAX2 PE=1 SV=4
Length = 417

Score = 30.8 bits (68), Expect = 4.3
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +1

Query: 187 DKLSKEKLNCTGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACF 366
D ++++L + E P + + SEH + E G+ S L L V + AS
Sbjct: 254 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNP 313

Query: 367 VTASTIDGTNEY 402
S + GT Y
Sbjct: 314 ELGSNVSGTQTY 325


>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus
GN=Prkcsh PE=1 SV=1
Length = 521

Score = 28.1 bits (61), Expect(2) = 5.0
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Frame = +1

Query: 148 SKLFRAIDGG--IAHDKLSKEKLNCTGGISEEPRTSTILECSEHHRKEDGSSPSWFKLAS 321
SK F +DG I D+++ + +C G S+EP T+ S H G P + L+S
Sbjct: 34 SKPFTCLDGTATIPFDQVNDDYCDCKDG-SDEPGTAACPNGS-FHCTNTGYKPLYI-LSS 90

Query: 322 QLVPVATQGEASACFVTASTIDGTNEYQWSPFCYILCSDDAANE 453
++ G C DGT+EY C C + E
Sbjct: 91 RV----NDGVCDCC-------DGTDEYNSGTVCENTCREKGRKE 123



Score = 21.2 bits (43), Expect(2) = 5.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2

Query: 77 MLGFPLFHLPLCLTSQKESPAGAHLSS 157
ML L LPLC + + P G LS+
Sbjct: 1 MLLLLLLLLPLCWAVEVKRPRGVSLSN 27


>sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo
sapiens GN=CD6 PE=1 SV=2
Length = 668

Score = 30.0 bits (66), Expect = 7.3
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1

Query: 328 VPVATQGEASACFVTASTIDGTNEYQWSPFCYILCSDDAANEVPLGNVCGASATAAVQST 507
+PV +S+C + T++ E W P C L AA V CG + A+ +
Sbjct: 43 LPVRLTNGSSSC---SGTVEVRLEASWEPACGALWDSRAAEAVCRALGCGGAEAASQLAP 99

Query: 508 PPPK 519
P P+
Sbjct: 100 PTPE 103


>sp|Q8U8L4|GLGB_AGRT5 1,4-alpha-glucan-branching enzyme
OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=glgB PE=3 SV=1
Length = 735

Score = 29.6 bits (65), Expect = 9.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1

Query: 277 RKEDGSSPSWFKLASQLVPVAT 342
R+EDG+ SW +LA+QL+P T
Sbjct: 269 RREDGTFLSWDELAAQLIPYCT 290


tr_hit_id Q0R4P2
Definition tr|Q0R4P2|Q0R4P2_STRAT ChlB6 OS=Streptomyces antibioticus
Align length 62
Score (bit) 35.0
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953491|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_O13, 5'
(532 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0R4P2|Q0R4P2_STRAT ChlB6 OS=Streptomyces antibioticus PE=4 SV=1 35 2.4
tr|A4HWN3|A4HWN3_LEIIN Phosphomevalonate kinase-like protein OS=... 35 2.4
tr|Q5BFX3|Q5BFX3_EMENI Putative uncharacterized protein OS=Emeri... 35 2.4
tr|Q4QF34|Q4QF34_LEIMA Phosphomevalonate kinase-like protein OS=... 34 4.1
tr|B6QCP8|B6QCP8_PENMA Avl9 protein, putative OS=Penicillium mar... 34 4.1
tr|Q1AXR6|Q1AXR6_RUBXD Amine oxidase OS=Rubrobacter xylanophilus... 34 5.4
tr|Q2G2Z5|Q2G2Z5_NOVAD Secretion protein HlyD OS=Novosphingobium... 33 6.9

>tr|Q0R4P2|Q0R4P2_STRAT ChlB6 OS=Streptomyces antibioticus PE=4 SV=1
Length = 352

Score = 35.0 bits (79), Expect = 2.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1

Query: 346 GEASACFVTASTIDGTNEY-QWSPFCYILCSDDAANEVPLGNVCGASATAAVQSTPPPKQ 522
G+A+A TA+ +DG+ +W Y + D A + LG G + +AV ST P+
Sbjct: 132 GDATALLTTATMVDGSPTIDRWRSAGYGIAIGDGAGAIVLGRRPGLAEISAVNSTTVPEM 191

Query: 523 KQ 528
+Q
Sbjct: 192 EQ 193


>tr|A4HWN3|A4HWN3_LEIIN Phosphomevalonate kinase-like protein
OS=Leishmania infantum GN=LinJ15.1420 PE=3 SV=1
Length = 458

Score = 35.0 bits (79), Expect = 2.4
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +1

Query: 217 TGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTASTIDGTN 396
TG S T++I+ C HH DG S + +Q+ TQG+ + F + + GT
Sbjct: 159 TGLGSSAAMTTSIVACLCHHFNADGCSHEYVHRIAQIAHSVTQGKIGSGFDVYTAVYGTC 218

Query: 397 EYQWSPFCYILCSDDAA 447
Y+ P + D+A
Sbjct: 219 AYRRFPASRVSMMMDSA 235


>tr|Q5BFX3|Q5BFX3_EMENI Putative uncharacterized protein OS=Emericella
nidulans GN=AN0557.2 PE=4 SV=1
Length = 1114

Score = 35.0 bits (79), Expect = 2.4
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 17/109 (15%)
Frame = +1

Query: 67 MAVDAGFSSLPFAPLPHLSERISRGRPSKLFRAIDGGIAHDKL-----------SKEKLN 213
M+ D+G SS +PLPH+ G P + R + G A + + E +N
Sbjct: 694 MSGDSGASSAVSSPLPHMQRSSDSGIPGQRGRYMAVGTATGSVFVWDIRSPTSRNSEIIN 753

Query: 214 CTGGI----SEEPRTSTILECSEH--HRKEDGSSPSWFKLASQLVPVAT 342
I +E PR S++ S + H DG +W LAS P+ T
Sbjct: 754 SIAPIRIIFTESPRVSSVALTSLYLVHGGNDGLVQAWDPLASTTRPIRT 802


>tr|Q4QF34|Q4QF34_LEIMA Phosphomevalonate kinase-like protein
OS=Leishmania major GN=LmjF15.1460 PE=3 SV=1
Length = 459

Score = 34.3 bits (77), Expect = 4.1
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1

Query: 217 TGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTASTIDGTN 396
TG S T++I+ C HH DG S + +Q+ TQG+ + F + + GT
Sbjct: 159 TGLGSSAAMTTSIVACLCHHFNADGCSHEYVHRIAQIAHSVTQGKIGSGFDVYTAVYGTC 218

Query: 397 EYQWSP 414
Y+ P
Sbjct: 219 AYRRFP 224


>tr|B6QCP8|B6QCP8_PENMA Avl9 protein, putative OS=Penicillium
marneffei ATCC 18224 GN=PMAA_067990 PE=4 SV=1
Length = 812

Score = 34.3 bits (77), Expect = 4.1
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = +1

Query: 226 ISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTAST--IDGTNE 399
+S R S++L +HHR + S S + S +P +G AS+ VT S +DG +
Sbjct: 686 MSRRKRWSSVLRMKDHHRSDSDSESSTSRKGSLDIP--RRGSASSTSVTGSNGMVDGIPK 743

Query: 400 YQWSPFCYILCSDDAANEVPLGNVCGASATAAVQSTPPPKQKQE 531
++ DD + A A P P E
Sbjct: 744 SPLGQRQIVIGDDDTVPTTTTPEIIAAEAEGKGDILPSPASSPE 787


>tr|Q1AXR6|Q1AXR6_RUBXD Amine oxidase OS=Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129) GN=Rxyl_0845 PE=4 SV=1
Length = 492

Score = 33.9 bits (76), Expect = 5.4
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Frame = +1

Query: 55 TMPSMAVDAGFSSLPFAPLPHLSERISRGRPSKLFRAIDGGIAHDKLSKEKLNCTGGISE 234
T P MA + G S L P+PHL + GR FR G+ ++ ++ G +
Sbjct: 355 TDPGMAPEGGDSLLVLVPVPHLGGGVDWGREEAGFRERVYGLLEERCGIDR----GSVLY 410

Query: 235 EPRTSTILECSEHHRKEDGSSPSWFKLASQLV-------PVATQGEASACFVTASTIDGT 393
E + T + E + E G++ F L ++ P+A++ FV AST GT
Sbjct: 411 E-KVRTPEDWREEYNLEKGAA---FGLGHGILQVGYFRPPLASRSVKGLYFVGASTHPGT 466


>tr|Q2G2Z5|Q2G2Z5_NOVAD Secretion protein HlyD OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=Saro_0040 PE=4
SV=1
Length = 389

Score = 33.5 bits (75), Expect = 6.9
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = -3

Query: 389 PSIVEAVTKQAEASPCVATGTSWLANLNQEGELPSSFR*CSEHSRIVLVLGSSLIPPVQF 210
P+ +T+ AE V++G+ L +L ++G++ R + V ++ + PV
Sbjct: 206 PAAGLVLTRAAEPGQIVSSGSGVLFSLARDGQMEMQARLAEADLARLTVGATAEVTPVGT 265

Query: 209 SFSFESLSWAIPPSIARKSLDGRPREILS 123
+ F W + P+I ++S +G R LS
Sbjct: 266 TRVFNGQVWQLSPTIDQQSREGIARIALS 294