DK953496 |
Clone id |
TST39A01NGRL0017_O19 |
Library |
TST39 |
Length |
544 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_O19. 5' end sequence. |
Accession |
DK953496 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL127Contig1 |
Sequence |
CTTCGCGTTGTAGCGGAGAGGAAGGCCACCATTTTTGCTCGGTTTCGCAAACCCTGTTCT CTGCGGTGCCATCTCTTCTGAGGACCTTCCATTCGGCAGGCAGGACATACATAGTATCTA GTTTACGGAAAGCCTTTGCCATAAAGAACAATGGTGTCAGATGCAAGCAAGAAGAAGGCA GCTCAAAAGAAAGCAGCTGCTGCAGCAAAGCGTGGCTCCAAAGCCACTGCCACCACTGCA GCCTCATCTAAGACCAATGGGGTCTCAAATTCAACCTCAAATGAAGTTGCAGATGAGATC GCTTCCATGCAGATAACTGATAGAACATGTACAGGGATCCTTGCATCGCATCCACAATCG AGAGATATTCATATTGAAAGTTTATCAGTTACGTTCCATGGCCACGATCTAATTGTTGAC TCAAGTCTTGAACTCAATTATGGAAGGCGGTATGGGTTGCTTGGGTTGAATGGTTGTGGA AAGTCAACCCTTCTAGCTTCTATAGGTTGTAGAGAGCTGCCTATTCCAGATCATATGGAT ATCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q99LE6 |
Definition |
sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2 OS=Mus musculus |
Align length |
74 |
Score (bit) |
77.4 |
E-value |
4.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2TUH6 |
Definition |
tr|Q2TUH6|Q2TUH6_PTEVI ATP-binding cassette transporter OS=Pteris vittata |
Align length |
96 |
Score (bit) |
150.0 |
E-value |
6.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953496|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_O19, 5' (544 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q2TUH6|Q2TUH6_PTEVI ATP-binding cassette transporter OS=Pteri... 150 6e-35 tr|Q84ZB2|Q84ZB2_ORYSJ Os08g0564100 protein OS=Oryza sativa subs... 125 2e-27 tr|B8B9L7|B8B9L7_ORYSI Putative uncharacterized protein OS=Oryza... 125 2e-27 tr|A9NVC5|A9NVC5_PICSI Putative uncharacterized protein OS=Picea... 124 3e-27 tr|A9TM80|A9TM80_PHYPA ATP-binding cassette transporter, subfami... 122 2e-26 tr|Q9MAY4|Q9MAY4_POPNI ABC transporter homolog OS=Populus nigra ... 120 5e-26 tr|A9T8D4|A9T8D4_PHYPA ATP-binding cassette transporter, subfami... 120 5e-26 tr|B4FZI2|B4FZI2_MAIZE Putative uncharacterized protein OS=Zea m... 120 6e-26 tr|A9RU54|A9RU54_PHYPA ATP-binding cassette transporter, subfami... 119 8e-26 tr|A7PQT1|A7PQT1_VITVI Chromosome chr6 scaffold_25, whole genome... 113 8e-24 tr|Q5GMM7|Q5GMM7_CAPCH ABC transporter protein (Fragment) OS=Cap... 112 1e-23 tr|Q9FJH6|Q9FJH6_ARATH ABC transporter (At5g60790) (Putative ABC... 110 4e-23 tr|Q650Z9|Q650Z9_ORYSJ Os09g0572400 protein OS=Oryza sativa subs... 104 3e-21 tr|Q4RMY3|Q4RMY3_TETNG Chromosome 6 SCAF15017, whole genome shot... 89 1e-16 tr|A7SFE5|A7SFE5_NEMVE Predicted protein OS=Nematostella vectens... 86 1e-15 tr|B5X0Y6|B5X0Y6_SALSA ATP-binding cassette sub-family F member ... 83 8e-15 tr|B0W6T7|B0W6T7_CULQU ATP-binding cassette sub-family F member ... 82 1e-14 tr|Q1HQD2|Q1HQD2_BOMMO ATP-binding cassette sub-family F member ... 82 2e-14 tr|Q802V8|Q802V8_DANRE ATP-binding cassette, sub-family F (GCN20... 82 2e-14 tr|Q6NYQ1|Q6NYQ1_DANRE Abcf2 protein OS=Danio rerio GN=abcf2 PE=... 82 2e-14 tr|Q16RE9|Q16RE9_AEDAE ATP-dependent transporter OS=Aedes aegypt... 82 2e-14 tr|Q7ZWW5|Q7ZWW5_XENLA Abcf2-prov protein OS=Xenopus laevis PE=2... 80 5e-14 tr|Q5BXN0|Q5BXN0_SCHJA SJCHGC05385 protein (Fragment) OS=Schisto... 80 5e-14 tr|B6P4V1|B6P4V1_BRAFL Putative uncharacterized protein OS=Branc... 78 3e-13 tr|B4MA76|B4MA76_DROVI GJ15717 OS=Drosophila virilis GN=GJ15717 ... 78 3e-13 tr|Q7PQX1|Q7PQX1_ANOGA AGAP002693-PA (Fragment) OS=Anopheles gam... 78 3e-13 tr|Q5ZM62|Q5ZM62_CHICK Putative uncharacterized protein OS=Gallu... 77 5e-13 tr|Q5ZHK3|Q5ZHK3_CHICK Putative uncharacterized protein (Fragmen... 77 5e-13 tr|Q3UVI9|Q3UVI9_MOUSE Putative uncharacterized protein OS=Mus m... 77 5e-13 tr|Q75MJ1|Q75MJ1_HUMAN Putative uncharacterized protein ABCF2 (A... 77 5e-13
>tr|Q2TUH6|Q2TUH6_PTEVI ATP-binding cassette transporter OS=Pteris vittata GN=ABCT1 PE=2 SV=1 Length = 597
Score = 150 bits (378), Expect = 6e-35 Identities = 74/96 (77%), Positives = 80/96 (83%) Frame = +1
Query: 256 NGVSNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEX 435 NGVSNS+ NEVADE+A MQITDRTCTGILASHPQSRDIHIESL+VTFHGHDLIVDSSLE Sbjct: 36 NGVSNSSPNEVADEMAYMQITDRTCTGILASHPQSRDIHIESLTVTFHGHDLIVDSSLEL 95
Query: 436 XXXXXXXXXXXXXCGKSTLLASIGCRELPIPDHMDI 543 CGKSTLL++IGCRELPIP+HMDI Sbjct: 96 NYRRRYGLLGLNGCGKSTLLSAIGCRELPIPEHMDI 131
>tr|Q84ZB2|Q84ZB2_ORYSJ Os08g0564100 protein OS=Oryza sativa subsp. japonica GN=P0705A05.111 PE=2 SV=1 Length = 592
Score = 125 bits (313), Expect = 2e-27 Identities = 59/93 (63%), Positives = 73/93 (78%) Frame = +1
Query: 265 SNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXX 444 S+S +++ A+ IA+++++DRTCTG+LASHP SRDIHIESLS+TFHGHDLIVDS LE Sbjct: 32 SSSAADKAANGIAALKLSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYG 91
Query: 445 XXXXXXXXXXCGKSTLLASIGCRELPIPDHMDI 543 CGKSTLL +IGCRELPIP+HMDI Sbjct: 92 RRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDI 124
>tr|B8B9L7|B8B9L7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30302 PE=4 SV=1 Length = 592
Score = 125 bits (313), Expect = 2e-27 Identities = 59/93 (63%), Positives = 73/93 (78%) Frame = +1
Query: 265 SNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXX 444 S+S +++ A+ IA+++++DRTCTG+LASHP SRDIHIESLS+TFHGHDLIVDS LE Sbjct: 32 SSSAADKAANGIAALKLSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYG 91
Query: 445 XXXXXXXXXXCGKSTLLASIGCRELPIPDHMDI 543 CGKSTLL +IGCRELPIP+HMDI Sbjct: 92 RRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDI 124
>tr|A9NVC5|A9NVC5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 599
Score = 124 bits (311), Expect = 3e-27 Identities = 58/92 (63%), Positives = 68/92 (73%) Frame = +1
Query: 268 NSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXXX 447 N + VAD++A +QI+DRTCTG+L SH SRDIHIESLSVTFHGH+LIVDS LE Sbjct: 42 NGNAERVADQLADLQISDRTCTGVLTSHALSRDIHIESLSVTFHGHELIVDSELELNYGR 101
Query: 448 XXXXXXXXXCGKSTLLASIGCRELPIPDHMDI 543 CGKSTLL ++GCRE+PIPDHMDI Sbjct: 102 RYGLLGLNGCGKSTLLTALGCREIPIPDHMDI 133
>tr|A9TM80|A9TM80_PHYPA ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF2 OS=Physcomitrella patens subsp. patens GN=ppabcf2 PE=3 SV=1 Length = 597
Score = 122 bits (305), Expect = 2e-26 Identities = 57/93 (61%), Positives = 72/93 (77%) Frame = +1
Query: 265 SNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXX 444 + +T+ +A+E+A+ +ITDRTCTG+LASHPQSRDIHIESLSVTFHGH+L+ DS+LE Sbjct: 39 AGATAESLAEEMAAARITDRTCTGVLASHPQSRDIHIESLSVTFHGHELVSDSTLELNYG 98
Query: 445 XXXXXXXXXXCGKSTLLASIGCRELPIPDHMDI 543 CGKSTLL +IG RE+PIP+HMDI Sbjct: 99 RRYGLLGLNGCGKSTLLTAIGLREVPIPEHMDI 131
>tr|Q9MAY4|Q9MAY4_POPNI ABC transporter homolog OS=Populus nigra GN=PnATH PE=2 SV=1 Length = 565
Score = 120 bits (301), Expect = 5e-26 Identities = 60/97 (61%), Positives = 71/97 (73%), Gaps = 4/97 (4%) Frame = +1
Query: 265 SNSTSNEVADEIAS----MQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLE 432 ++ + NE D++++ +QI+DRTCTG+L SHP SRDI IESLSVTFHGHDLIVDS LE Sbjct: 39 ASDSQNEGVDKLSNGFGALQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELE 98
Query: 433 XXXXXXXXXXXXXXCGKSTLLASIGCRELPIPDHMDI 543 CGKSTLLA+IGCRELPIPDHMDI Sbjct: 99 LNYGRRYGLLGLNGCGKSTLLAAIGCRELPIPDHMDI 135
>tr|A9T8D4|A9T8D4_PHYPA ATP-binding cassette transporter, subfamily F, member 3 protein PpABCF3 OS=Physcomitrella patens subsp. patens GN=ppabcf3 PE=3 SV=1 Length = 597
Score = 120 bits (301), Expect = 5e-26 Identities = 60/95 (63%), Positives = 73/95 (76%), Gaps = 1/95 (1%) Frame = +1
Query: 262 VSN-STSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXX 438 VSN +T++ +A+E+A+ ITDRTCTGILASH QSRDIHIESLSVTFHGH+L+ DS+LE Sbjct: 37 VSNGTTADTLAEELAAANITDRTCTGILASHAQSRDIHIESLSVTFHGHELVADSTLELN 96
Query: 439 XXXXXXXXXXXXCGKSTLLASIGCRELPIPDHMDI 543 CGKSTLL +IG RE+PIP+HMDI Sbjct: 97 YGRRYGLLGLNGCGKSTLLTAIGLREVPIPEHMDI 131
>tr|B4FZI2|B4FZI2_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 628
Score = 120 bits (300), Expect = 6e-26 Identities = 57/93 (61%), Positives = 69/93 (74%) Frame = +1
Query: 265 SNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXX 444 S+S + +A+++++DRTCTG+LASHP SRDIHIESLS+TFHGHDLIVDS LE Sbjct: 68 SSSADAKSIGAVAALKLSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYG 127
Query: 445 XXXXXXXXXXCGKSTLLASIGCRELPIPDHMDI 543 CGKSTLL +IGCRELPIP+HMDI Sbjct: 128 RRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDI 160
>tr|A9RU54|A9RU54_PHYPA ATP-binding cassette transporter, subfamily F, member 4 protein PpABCF4 OS=Physcomitrella patens subsp. patens GN=ppabcf4 PE=3 SV=1 Length = 597
Score = 119 bits (299), Expect = 8e-26 Identities = 59/95 (62%), Positives = 72/95 (75%), Gaps = 1/95 (1%) Frame = +1
Query: 262 VSNSTSNE-VADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXX 438 V+N TS + +A+E+A+ ITDRTCTG+LASH QSRDIHIESLSVTFHGH+L+ DS+LE Sbjct: 37 VTNGTSADTLAEELAAANITDRTCTGVLASHAQSRDIHIESLSVTFHGHELVADSTLELN 96
Query: 439 XXXXXXXXXXXXCGKSTLLASIGCRELPIPDHMDI 543 CGKSTLL +IG RE+PIP+HMDI Sbjct: 97 YGRRYGLLGLNGCGKSTLLTAIGLREVPIPEHMDI 131
>tr|A7PQT1|A7PQT1_VITVI Chromosome chr6 scaffold_25, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022186001 PE=3 SV=1 Length = 547
Score = 113 bits (282), Expect = 8e-24 Identities = 54/79 (68%), Positives = 60/79 (75%) Frame = +1
Query: 307 MQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXXXXXXXXXXXXCGKS 486 M+I+DRTCTG+L SHP SRDI IESLSVTFHGHDLIVD+ LE CGKS Sbjct: 1 MKISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDTELELNYGRRYGLLGLNGCGKS 60
Query: 487 TLLASIGCRELPIPDHMDI 543 TLL +IGCRELPIP+HMDI Sbjct: 61 TLLTAIGCRELPIPEHMDI 79
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