DK953499 |
Clone id |
TST39A01NGRL0017_O22 |
Library |
TST39 |
Length |
558 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_O22. 5' end sequence. |
Accession |
DK953499 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL92Contig1 |
Sequence |
GTTGCTATGGATGAGACCACAACAATTGAAGATGTAGATAAGCTTTTCCACATTTTTGCG AATGGCAAGCCTGTGAAGTTCACTGCTGAGGAGGTTGCTCCCAAGGTAGACATGGCCATT CCATTGGCACTTCAGCGTGATACTCCATACTTGACACATCCAGTGTTTAACATGTACCAT ACTGAGCATGAGATGCTGAGGTACCTACATAGAATTCAAGCAAAGGATTTGTCTTTGTGC CACAGCATGATCCCGCTAGGATCATGTACCATGAAGCTCAACTCAACTGTAGAAATGATG CCTGTCACATGGCCCGAGTTTGCTAATCTTCACCCGTTTGCACCATTAGATCAGACGGCT GGGTATCAGGAAATGTTTCAAAACCTAGGAGAACTTCTTGCAGAAATCACTGGCTTTGAT TCTGTTTCTCTGCAACCTAATGCTGGTGCTTCTGGAGAGTATGCTGGGCTTATGGTCATC CGTGCATATCATCATTCAAGGGGAGACTATCAGCGGAATGTCTGCATCATCCCTGTCTTC TGCCCATGGGACAAACCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O80988 |
Definition |
sp|O80988|GCSP_ARATH Glycine dehydrogenase [decarboxylating], mitochondrial OS=Arabidopsis thaliana |
Align length |
179 |
Score (bit) |
302.0 |
E-value |
6.0e-82 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953499|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_O22, 5' (558 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O80988|GCSP_ARATH Glycine dehydrogenase [decarboxylating], mi... 302 6e-82 sp|Q94B78|GCSP2_ARATH Putative glycine dehydrogenase [decarboxyl... 298 1e-80 sp|O49850|GCSP_FLAAN Glycine dehydrogenase [decarboxylating], mi... 294 2e-79 sp|P49362|GCSPB_FLAPR Glycine dehydrogenase [decarboxylating] B,... 294 2e-79 sp|P49361|GCSPA_FLAPR Glycine dehydrogenase [decarboxylating] A,... 294 2e-79 sp|O49852|GCSP_FLATR Glycine dehydrogenase [decarboxylating], mi... 290 3e-78 sp|P26969|GCSP_PEA Glycine dehydrogenase [decarboxylating], mito... 290 4e-78 sp|O49954|GCSP_SOLTU Glycine dehydrogenase [decarboxylating], mi... 289 6e-78 sp|Q8DII3|GCSP_THEEB Glycine dehydrogenase [decarboxylating] OS=... 228 2e-59 sp|A7N5C4|GCSP_VIBHB Glycine dehydrogenase [decarboxylating] OS=... 223 7e-58 sp|Q87I05|GCSP_VIBPA Glycine dehydrogenase [decarboxylating] OS=... 222 9e-58 sp|Q3M9G1|GCSP_ANAVT Glycine dehydrogenase [decarboxylating] OS=... 222 1e-57 sp|P74416|GCSP_SYNY3 Glycine dehydrogenase [decarboxylating] OS=... 221 2e-57 sp|Q46VZ5|GCSP_RALEJ Glycine dehydrogenase [decarboxylating] OS=... 218 2e-56 sp|Q3IFW1|GCSP_PSEHT Glycine dehydrogenase [decarboxylating] OS=... 216 8e-56 sp|Q1LHM2|GCSP_RALME Glycine dehydrogenase [decarboxylating] OS=... 215 1e-55 sp|Q8YNF9|GCSP_ANASP Glycine dehydrogenase [decarboxylating] OS=... 215 1e-55 sp|Q8D7G7|GCSP_VIBVU Glycine dehydrogenase [decarboxylating] OS=... 214 2e-55 sp|Q2SFI6|GCSP_HAHCH Glycine dehydrogenase [decarboxylating] OS=... 214 3e-55 sp|Q6MPZ6|GCSP_BDEBA Glycine dehydrogenase [decarboxylating] OS=... 213 4e-55 sp|Q7MEH9|GCSP_VIBVY Glycine dehydrogenase [decarboxylating] OS=... 213 7e-55 sp|Q2KYL7|GCSP_BORA1 Glycine dehydrogenase [decarboxylating] OS=... 213 7e-55 sp|Q8XU98|GCSP_RALSO Glycine dehydrogenase [decarboxylating] OS=... 212 9e-55 sp|Q6LHN5|GCSP_PHOPR Glycine dehydrogenase [decarboxylating] OS=... 212 9e-55 sp|A5EYY8|GCSP_VIBC3 Glycine dehydrogenase [decarboxylating] OS=... 212 1e-54 sp|Q54KM7|GCSP_DICDI Glycine dehydrogenase [decarboxylating], mi... 212 1e-54 sp|Q7NSJ5|GCSP_CHRVO Glycine dehydrogenase [decarboxylating] OS=... 211 2e-54 sp|Q486J6|GCSP1_COLP3 Glycine dehydrogenase [decarboxylating] 1 ... 211 2e-54 sp|Q5DZM3|GCSP_VIBF1 Glycine dehydrogenase [decarboxylating] OS=... 210 4e-54 sp|Q4K7Q8|GCSP1_PSEF5 Glycine dehydrogenase [decarboxylating] 1 ... 208 2e-53
>sp|O80988|GCSP_ARATH Glycine dehydrogenase [decarboxylating], mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1 Length = 1044
Score = 302 bits (774), Expect = 6e-82 Identities = 138/179 (77%), Positives = 160/179 (89%) Frame = +1
Query: 1 VAMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYH 180 VA DETTT++DVDKLF +FA+GKPV+FTAE +AP+ + AIP +L R++PYLTHP+FNMYH Sbjct: 496 VAFDETTTLDDVDKLFEVFASGKPVQFTAESLAPEFNNAIPSSLTRESPYLTHPIFNMYH 555
Query: 181 TEHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTA 360 TEHE+LRY+H++Q KDLSLCHSMIPLGSCTMKLN+T EMMPVTWP F N+HPFAP++Q Sbjct: 556 TEHELLRYIHKLQNKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTNMHPFAPVEQAQ 615
Query: 361 GYQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIPV 537 GYQEMF NLGELL ITGFDS SLQPNAGA+GEYAGLMVIRAYH SRGD+ RNVCIIPV Sbjct: 616 GYQEMFTNLGELLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPV 674
>sp|Q94B78|GCSP2_ARATH Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2 Length = 1037
Score = 298 bits (763), Expect = 1e-80 Identities = 134/178 (75%), Positives = 160/178 (89%) Frame = +1
Query: 4 AMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYHT 183 + DETTT++DVDKLF +FA+GKPV FTAE +AP+V +IP +L R++PYLTHP+FNMYHT Sbjct: 491 SFDETTTLDDVDKLFKVFASGKPVPFTAESLAPEVQNSIPSSLTRESPYLTHPIFNMYHT 550
Query: 184 EHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTAG 363 EHE+LRY+H++Q+KDLSLCHSMIPLGSCTMKLN+T EMMPVTWP F ++HPFAP++Q G Sbjct: 551 EHELLRYIHKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDIHPFAPVEQAQG 610
Query: 364 YQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIPV 537 YQEMF+NLG+LL ITGFDS SLQPNAGA+GEYAGLMVIRAYH SRGD+ RNVCIIPV Sbjct: 611 YQEMFENLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPV 668
>sp|O49850|GCSP_FLAAN Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1 Length = 1034
Score = 294 bits (753), Expect = 2e-79 Identities = 137/179 (76%), Positives = 156/179 (87%) Frame = +1
Query: 1 VAMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYH 180 VA DETTTIEDVD LF +FA GKPV FTA +AP+V AIP L R+TPYLTHP+FNMYH Sbjct: 486 VAFDETTTIEDVDTLFKVFALGKPVPFTAASIAPEVQDAIPSGLVRETPYLTHPIFNMYH 545
Query: 181 TEHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTA 360 TEHE+LRY+ ++Q+KDLSLCHSMIPLGSCTMKLN+T EMMPVTWP FA++HPFAP +Q Sbjct: 546 TEHELLRYISKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPAFADIHPFAPTEQAQ 605
Query: 361 GYQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIPV 537 GYQEMF+NLG+LL ITGFDS SLQPNAGA+GEYAGLMVIRAYH +RGD+ RNVCIIPV Sbjct: 606 GYQEMFKNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMARGDHHRNVCIIPV 664
>sp|P49362|GCSPB_FLAPR Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1 Length = 1034
Score = 294 bits (753), Expect = 2e-79 Identities = 137/179 (76%), Positives = 156/179 (87%) Frame = +1
Query: 1 VAMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYH 180 VA DETTTIEDVD LF +FA GKPV FTA +AP+V AIP L R+TPYLTHP+FNMYH Sbjct: 486 VAFDETTTIEDVDTLFKVFALGKPVTFTAASIAPEVQDAIPSGLVRETPYLTHPIFNMYH 545
Query: 181 TEHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTA 360 TEHE+LRY+ ++Q+KDLSLCHSMIPLGSCTMKLN+T EMMPVTWP FA++HPFAP +Q Sbjct: 546 TEHELLRYISKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPAFADIHPFAPTEQAQ 605
Query: 361 GYQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIPV 537 GYQEMF+NLG+LL ITGFDS SLQPNAGA+GEYAGLMVIRAYH +RGD+ RNVCIIPV Sbjct: 606 GYQEMFKNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMARGDHHRNVCIIPV 664
>sp|P49361|GCSPA_FLAPR Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1 Length = 1037
Score = 294 bits (753), Expect = 2e-79 Identities = 137/179 (76%), Positives = 156/179 (87%) Frame = +1
Query: 1 VAMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYH 180 VA DETTTIEDVD LF +FA GKPV FTA +AP+V AIP L R+TPYLTHP+FNMYH Sbjct: 489 VAFDETTTIEDVDTLFKVFALGKPVTFTAASIAPEVQDAIPSGLVRETPYLTHPIFNMYH 548
Query: 181 TEHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTA 360 TEHE+LRY+ ++Q+KDLSLCHSMIPLGSCTMKLN+T EMMPVTWP FA++HPFAP +Q Sbjct: 549 TEHELLRYISKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPAFADIHPFAPTEQAQ 608
Query: 361 GYQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIPV 537 GYQEMF+NLG+LL ITGFDS SLQPNAGA+GEYAGLMVIRAYH +RGD+ RNVCIIPV Sbjct: 609 GYQEMFKNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMARGDHHRNVCIIPV 667
>sp|O49852|GCSP_FLATR Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1 Length = 1034
Score = 290 bits (743), Expect = 3e-78 Identities = 135/179 (75%), Positives = 155/179 (86%) Frame = +1
Query: 1 VAMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYH 180 VA DETTTIEDVD LF +FA GKPV FTA +AP+V AIP L R+TPYLTHP+FNMYH Sbjct: 486 VAFDETTTIEDVDTLFKVFALGKPVTFTAASIAPEVQDAIPSGLVRETPYLTHPIFNMYH 545
Query: 181 TEHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTA 360 TEHE+LRY+ ++Q+KDLSLCHSMIPLGSCTMKLN+T EMMPVTWP FA++HPFAP +Q Sbjct: 546 TEHELLRYISKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPAFADIHPFAPTEQAQ 605
Query: 361 GYQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIPV 537 GYQEMF+NLG+LL ITGFDS SLQPNAGA+GEYAGLMVI+AYH +RGD+ R VCIIPV Sbjct: 606 GYQEMFKNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIQAYHMARGDHHRKVCIIPV 664
>sp|P26969|GCSP_PEA Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1 Length = 1057
Score = 290 bits (741), Expect = 4e-78 Identities = 134/177 (75%), Positives = 151/177 (85%) Frame = +1
Query: 4 AMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYHT 183 A DETTT+EDVDKLF +FA GKPV FTA +AP+ AIP L R++PYLTHP+FN Y T Sbjct: 509 AFDETTTLEDVDKLFKVFAGGKPVSFTAASLAPEFQNAIPSGLVRESPYLTHPIFNTYQT 568
Query: 184 EHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTAG 363 EHE+LRY+HR+Q+KDLSLCHSMIPLGSCTMKLN+T EMMPVTWP F +LHPFAP +Q G Sbjct: 569 EHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDLHPFAPTEQAQG 628
Query: 364 YQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIP 534 YQEMF NLG+LL ITGFDS SLQPNAGA+GEYAGLMVIRAYH SRGD+ RNVCIIP Sbjct: 629 YQEMFNNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIP 685
>sp|O49954|GCSP_SOLTU Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1 Length = 1035
Score = 289 bits (740), Expect = 6e-78 Identities = 134/179 (74%), Positives = 154/179 (86%) Frame = +1
Query: 1 VAMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYH 180 V+ DETTT+EDVD LF +FA GKPV FTA+ +A +V+ IP L R+TP+LTH +FN YH Sbjct: 487 VSFDETTTLEDVDDLFKVFALGKPVPFTAQSIAQEVENLIPSGLTRETPFLTHQIFNSYH 546
Query: 181 TEHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTA 360 TEHE+LRYLH++Q+KDLSLCHSMIPLGSCTMKLN+T EMMPVTWP FAN+HPFAP +Q A Sbjct: 547 TEHELLRYLHKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPTEQAA 606
Query: 361 GYQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIPV 537 GYQEMF +LG LL ITGFDS SLQPNAGA+GEYAGLMVIRAYH SRGD+ RNVCIIPV Sbjct: 607 GYQEMFDDLGALLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPV 665
>sp|Q8DII3|GCSP_THEEB Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1 Length = 954
Score = 228 bits (580), Expect = 2e-59 Identities = 107/178 (60%), Positives = 136/178 (76%) Frame = +1
Query: 1 VAMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYH 180 +++DETTT +DV L +F +P + + +P AL+R +PYL HPVF YH Sbjct: 430 ISLDETTTEKDVADLLALFG-ARPAEVEGGD-------RLPAALKRQSPYLQHPVFQDYH 481
Query: 181 TEHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTA 360 +EH +LRY+HR+QAKDLSL SMIPLGSCTMKLN+T EM+P++WPEF LHPFAP +Q Sbjct: 482 SEHALLRYIHRLQAKDLSLTTSMIPLGSCTMKLNATAEMLPISWPEFNQLHPFAPQEQAQ 541
Query: 361 GYQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIP 534 GYQ +F+ L +LAEITGFD++SLQPNAG+ GEYAGL+VIR YHHSRG+ QRNVC+IP Sbjct: 542 GYQALFRELAAMLAEITGFDAISLQPNAGSQGEYAGLLVIRQYHHSRGESQRNVCLIP 599
>sp|A7N5C4|GCSP_VIBHB Glycine dehydrogenase [decarboxylating] OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvP PE=3 SV=1 Length = 954
Score = 223 bits (567), Expect = 7e-58 Identities = 105/178 (58%), Positives = 134/178 (75%) Frame = +1
Query: 1 VAMDETTTIEDVDKLFHIFANGKPVKFTAEEVAPKVDMAIPLALQRDTPYLTHPVFNMYH 180 V+ DETTT+ DV+ LF +F + V + E+A AIP AL+R T YLTHPVFN +H Sbjct: 420 VSFDETTTVADVEALFAVFGVKEEVAALSTEIAGNEFAAIPEALRRTTEYLTHPVFNTHH 479
Query: 181 TEHEMLRYLHRIQAKDLSLCHSMIPLGSCTMKLNSTVEMMPVTWPEFANLHPFAPLDQTA 360 +E +M+RYL +++ KD SL H MIPLGSCTMKLN+ EM+PVTWPEF ++HPFAP DQ A Sbjct: 480 SETQMMRYLKQLENKDFSLTHGMIPLGSCTMKLNAAAEMIPVTWPEFGSIHPFAPADQAA 539
Query: 361 GYQEMFQNLGELLAEITGFDSVSLQPNAGASGEYAGLMVIRAYHHSRGDYQRNVCIIP 534 GY + ++L E L EITG+D+ SLQPN+GASGEYAGL+ I+ YH SRG+ RNVC+IP Sbjct: 540 GYAALAKDLKEKLCEITGYDAFSLQPNSGASGEYAGLIAIQRYHESRGEGHRNVCLIP 597
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q38766 |
Definition |
tr|Q38766|Q38766_AVESA Victorin binding protein OS=Avena sativa |
Align length |
179 |
Score (bit) |
303.0 |
E-value |
4.0e-81 |
Report |
|