DK953514 |
Clone id |
TST39A01NGRL0017_P13 |
Library |
TST39 |
Length |
578 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_P13. 5' end sequence. |
Accession |
DK953514 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL4263Contig1 |
Sequence |
GGACTTATAAGTTGCAAATGGTTTTGTCTCTCTGCCATGGTGGAAAAGGTGGCGCCCATT TATGAATCCGCCCTGTGTGAGATCTATTCGTCTCCTGCGCGAAGTGAAGGCTGATCTCTG CAGTGAACGCACATGTATACAACTTAGCGAGCCTCTATTTTATACAAAACGCCTAATGGC TGCAGAACGGGAGCCAGTAGAAGTTGCATTACTGTAGGAGATCCCGCGTGCCCGAGGACC TGGTCTTGCTGCGGAGCGACGGCAGTGTCCTGATAATCGATCTGTCCAAGATTGAACCAC ACCCATACTCTTACAGAAAATTGTGGTAGCCTACATCTTACACCAAGCAGCCATGAGTGG ACACGATTCAAAATACTTTTCTACCACAAAGAAGGGAGAAATCCCCGAGCTTAAGGAAGA GCTCAATTCACAGTACAAGGACAAAAAGAAAGATGCTGTGAAGAAGGTGATAGCAGCAAT GACAGTGGGGAAGGATGTTTCCATGCTTTTCACAGATGTGGTGAATTGCATGCAAACTGA GAATCTCGAATTGAAGAAACTTGTGTATCTGTACCTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q54X82 |
Definition |
sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum |
Align length |
71 |
Score (bit) |
92.4 |
E-value |
1.0e-18 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9SUS3 |
Definition |
tr|Q9SUS3|Q9SUS3_ARATH Beta-adaptin-like protein (At4g11380) OS=Arabidopsis thaliana |
Align length |
75 |
Score (bit) |
117.0 |
E-value |
4.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953514|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_P13, 5' (578 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9SUS3|Q9SUS3_ARATH Beta-adaptin-like protein (At4g11380) OS=... 117 4e-25 tr|Q9M650|Q9M650_ARATH Beta-adaptin-like protein B OS=Arabidopsi... 117 4e-25 tr|Q8VZF2|Q8VZF2_ARATH AT4g23460/F16G20_160 OS=Arabidopsis thali... 117 4e-25 tr|Q10LA0|Q10LA0_ORYSJ Adapter-related protein complex 1 beta 1 ... 117 4e-25 tr|O81742|O81742_ARATH Beta adaptin-like protein OS=Arabidopsis ... 117 4e-25 tr|B8APS8|B8APS8_ORYSI Putative uncharacterized protein OS=Oryza... 117 4e-25 tr|B2WSA1|B2WSA1_9BRAS Putative beta-adaptin OS=Capsella rubella... 117 4e-25 tr|A7QNL1|A7QNL1_VITVI Chromosome chr2 scaffold_132, whole genom... 117 4e-25 tr|B8LNI5|B8LNI5_PICSI Putative uncharacterized protein OS=Picea... 115 2e-24 tr|A9TVR6|A9TVR6_PHYPA Predicted protein OS=Physcomitrella paten... 114 4e-24 tr|A9TPL0|A9TPL0_PHYPA Predicted protein OS=Physcomitrella paten... 114 4e-24 tr|A9S2H0|A9S2H0_PHYPA Predicted protein OS=Physcomitrella paten... 114 4e-24 tr|Q9M649|Q9M649_ARATH Beta-adaptin-like protein C (Fragment) OS... 112 2e-23 tr|Q0DRT9|Q0DRT9_ORYSJ Os03g0355600 protein (Fragment) OS=Oryza ... 112 2e-23 tr|Q4RT04|Q4RT04_TETNG Chromosome 12 SCAF14999, whole genome sho... 92 2e-17 tr|B2GUA2|B2GUA2_XENTR LOC100158536 protein OS=Xenopus tropicali... 92 2e-17 tr|A5PMT0|A5PMT0_DANRE Novel protein similar to vertebrate adapt... 92 2e-17 tr|A5PMS9|A5PMS9_DANRE Novel protein similar to vertebrate adapt... 92 2e-17 tr|A1L2H5|A1L2H5_XENLA LOC100036849 protein OS=Xenopus laevis GN... 92 2e-17 tr|Q8CC13|Q8CC13_MOUSE Putative uncharacterized protein OS=Mus m... 92 2e-17 tr|Q5SVG5|Q5SVG5_MOUSE Adaptor protein complex AP-1, beta 1 subu... 92 2e-17 tr|Q5SVG4|Q5SVG4_MOUSE Adaptor protein complex AP-1, beta 1 subu... 92 2e-17 tr|Q3U1K9|Q3U1K9_MOUSE Putative uncharacterized protein OS=Mus m... 92 2e-17 tr|Q3TXG4|Q3TXG4_MOUSE Putative uncharacterized protein OS=Mus m... 92 2e-17 tr|Q3TVN4|Q3TVN4_MOUSE Putative uncharacterized protein OS=Mus m... 92 2e-17 tr|Q2KJB2|Q2KJB2_BOVIN Adaptor-related protein complex 1, beta 1... 92 2e-17 tr|A7SJK8|A7SJK8_NEMVE Predicted protein OS=Nematostella vectens... 92 2e-17 tr|Q86X54|Q86X54_HUMAN AP1B1 protein OS=Homo sapiens PE=1 SV=1 92 2e-17 tr|Q20WL3|Q20WL3_HUMAN AP1B1 protein OS=Homo sapiens GN=AP1B1 PE... 92 2e-17 tr|B6PVQ6|B6PVQ6_BRAFL Putative uncharacterized protein OS=Branc... 92 2e-17
>tr|Q9SUS3|Q9SUS3_ARATH Beta-adaptin-like protein (At4g11380) OS=Arabidopsis thaliana GN=AT4g11380 PE=2 SV=1 Length = 894
Score = 117 bits (294), Expect = 4e-25 Identities = 60/75 (80%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QTENLELKKLVYLYL Sbjct: 61 QTENLELKKLVYLYL 75
>tr|Q9M650|Q9M650_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana PE=2 SV=1 Length = 894
Score = 117 bits (294), Expect = 4e-25 Identities = 60/75 (80%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QTENLELKKLVYLYL Sbjct: 61 QTENLELKKLVYLYL 75
>tr|Q8VZF2|Q8VZF2_ARATH AT4g23460/F16G20_160 OS=Arabidopsis thaliana PE=2 SV=1 Length = 893
Score = 117 bits (294), Expect = 4e-25 Identities = 60/75 (80%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QTENLELKKLVYLYL Sbjct: 61 QTENLELKKLVYLYL 75
>tr|Q10LA0|Q10LA0_ORYSJ Adapter-related protein complex 1 beta 1 subunit, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g23950 PE=4 SV=1 Length = 896
Score = 117 bits (294), Expect = 4e-25 Identities = 60/75 (80%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QTENLELKKLVYLYL Sbjct: 61 QTENLELKKLVYLYL 75
>tr|O81742|O81742_ARATH Beta adaptin-like protein OS=Arabidopsis thaliana GN=F16G20.160 PE=2 SV=1 Length = 719
Score = 117 bits (294), Expect = 4e-25 Identities = 60/75 (80%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QTENLELKKLVYLYL Sbjct: 61 QTENLELKKLVYLYL 75
>tr|B8APS8|B8APS8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11602 PE=4 SV=1 Length = 896
Score = 117 bits (294), Expect = 4e-25 Identities = 60/75 (80%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QTENLELKKLVYLYL Sbjct: 61 QTENLELKKLVYLYL 75
>tr|B2WSA1|B2WSA1_9BRAS Putative beta-adaptin OS=Capsella rubella GN=6J23.22 PE=4 SV=1 Length = 893
Score = 117 bits (294), Expect = 4e-25 Identities = 60/75 (80%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QTENLELKKLVYLYL Sbjct: 61 QTENLELKKLVYLYL 75
>tr|A7QNL1|A7QNL1_VITVI Chromosome chr2 scaffold_132, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002570001 PE=4 SV=1 Length = 903
Score = 117 bits (294), Expect = 4e-25 Identities = 60/75 (80%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QTENLELKKLVYLYL Sbjct: 61 QTENLELKKLVYLYL 75
>tr|B8LNI5|B8LNI5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 903
Score = 115 bits (288), Expect = 2e-24 Identities = 58/75 (77%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHDSKYFSTTKKGEIPELK+ELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKDELNSQYKDKKKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QT+NLELKKLVYLYL Sbjct: 61 QTDNLELKKLVYLYL 75
>tr|A9TVR6|A9TVR6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_225918 PE=4 SV=1 Length = 899
Score = 114 bits (285), Expect = 4e-24 Identities = 58/75 (77%), Positives = 60/75 (80%) Frame = +2
Query: 353 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 532 MSGHD+KYF+TTKKGEI ELKEELNSQY MTVGKDVSMLFTDVVNCM Sbjct: 1 MSGHDAKYFTTTKKGEIHELKEELNSQYKDKKKDAVKKVIAAMTVGKDVSMLFTDVVNCM 60
Query: 533 QTENLELKKLVYLYL 577 QTENLELKKLVYLYL Sbjct: 61 QTENLELKKLVYLYL 75
|