DK953532
Clone id TST39A01NGRL0018_A09
Library
Length 636
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_A09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTCGGCTCTCCCCGAGCCTGCGCCCTGTCTGAGGTATGTTTCCAGCTCTTGGGTTAGCTC
TGTTTCGTAGCTTCTCTTGAAAAAAGCAAGCCATACGAGGAGCTGCTCTTGTGGAATGGG
GCCTGCCATTCTTCTCTGCCCTTCTTCCTCTGCAGCTCATCTATGGCGACAGGCGCTCCC
CTCCTTGAAACCCAAACAGAAAGAGGGCAGCTTGTCCATGTCCCCAAGATGCTTTGCAGT
TGCTGGGGATCTGGCAGGCAGGCCGCCATTCTTCCTTTACTCTGCATCTCCAGTTGAGAA
ATGCAGAAAGTTTTTCACATGGAGAAGGGTTTCTGCTGCTGCTGCTGCTGCCGCGAGCGA
GATATCCGTTGAAGAGGCTTCCGTAGAAGAGGCGGTTGCTGTGGTGGATGCCGAGCCAAG
TGTGGCGGATGTGGAGCAGAGTGTGGCTGCTGATGCGGAGGAGAGCGTGGCAGAGGAACC
CGCTACTAGCAGTGATGTCTCTGCCTCTACCAGCAATGAGGACACCGCTCTTGATTCTAG
TAGCAGCGACGTCTCTTCCATCCCGGCAGAGAAGACGCAAGCAAGGCGATCATCTAGTAG
GAGTAGCAGTAAGAAGAACATTACCATAAGCCCCGC
■■Homology search results ■■ -
sp_hit_id Q2N8I5
Definition sp|Q2N8I5|HIS7_ERYLH Imidazoleglycerol-phosphate dehydratase OS=Erythrobacter litoralis (strain HTCC2594)
Align length 44
Score (bit) 32.0
E-value 2.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953532|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_A09, 5'
(636 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2N8I5|HIS7_ERYLH Imidazoleglycerol-phosphate dehydratase OS=... 32 2.7
sp|Q5R5F8|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=P... 31 6.1
sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=P... 31 6.1
sp|P41682|ADH7_RAT Alcohol dehydrogenase class 4 mu/sigma chain ... 30 8.0

>sp|Q2N8I5|HIS7_ERYLH Imidazoleglycerol-phosphate dehydratase
OS=Erythrobacter litoralis (strain HTCC2594) GN=hisB
PE=3 SV=1
Length = 197

Score = 32.0 bits (71), Expect = 2.7
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3

Query: 556 RDVAATRIKSGVLIAGRGR-DITASSGFLCHALLRISSHTLLHI 428
R+ A TRI V + GRG D++ GFL H + + S H+L+ +
Sbjct: 8 RNTAETRILIEVNLDGRGNYDVSTGIGFLDHMVEQFSKHSLIDV 51


>sp|Q5R5F8|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii
GN=PANK4 PE=2 SV=1
Length = 773

Score = 30.8 bits (68), Expect = 6.1
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -3

Query: 589 SPCLRLLCRDGRDVAATRIKSG--VLIAGRGRDITASSGFLCHALLRISSHTLLHIRHTW 416
SPCL L D A R + V+I G GR + + HA LR S L I++ W
Sbjct: 697 SPCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNY----HAALRCESLKLAVIKNAW 752

Query: 415 LGIHHSNRLF 386
L RLF
Sbjct: 753 LAERLGGRLF 762


>sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens
GN=PANK4 PE=1 SV=1
Length = 773

Score = 30.8 bits (68), Expect = 6.1
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -3

Query: 589 SPCLRLLCRDGRDVAATRIKSG--VLIAGRGRDITASSGFLCHALLRISSHTLLHIRHTW 416
SPCL L D A R + V+I G GR + + HA LR S L I++ W
Sbjct: 697 SPCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNY----HAALRCESLKLAVIKNAW 752

Query: 415 LGIHHSNRLF 386
L RLF
Sbjct: 753 LAERLGGRLF 762


>sp|P41682|ADH7_RAT Alcohol dehydrogenase class 4 mu/sigma chain
OS=Rattus norvegicus GN=Adh7 PE=1 SV=2
Length = 374

Score = 30.4 bits (67), Expect = 8.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Frame = -2

Query: 221 TWTSCPLSVWVSRRGAPVAIDELQRKK----GREEWQAPFHKSSSSYGLLFSREATK 63
TW C W SR P + E KK PFH S + LL+S ++ +
Sbjct: 313 TWKGCVFGGWKSRDDVPKLVTEFLEKKFDLGQLITHTLPFHNISEGFELLYSGQSIR 369


tr_hit_id A8P9D5
Definition tr|A8P9D5|A8P9D5_COPC7 Predicted protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 89
Score (bit) 35.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953532|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_A09, 5'
(636 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8P9D5|A8P9D5_COPC7 Predicted protein OS=Coprinopsis cinerea ... 36 2.2
tr|Q7NQT9|Q7NQT9_CHRVO Probable 2-nitropropane dioxygenase OS=Ch... 35 2.9
tr|Q4F9K3|Q4F9K3_9MAGN 3-hydroxy-methylglutaryl coenzyme A reduc... 35 2.9

>tr|A8P9D5|A8P9D5_COPC7 Predicted protein OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_09650 PE=4
SV=1
Length = 324

Score = 35.8 bits (81), Expect = 2.2
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = -3

Query: 274 EEWRPACQIPSNCKAS-WGHGQA------ALFLFGFQGGERLSP*MSCRGRRAEKNGRPH 116
+E RP +PS+ S GH QA AL F+ + L M RGRR +++ P
Sbjct: 8 KESRPPNSVPSSVTGSPLGHAQADSGNKDALPPTFFRLADHLKAQMDSRGRRTQRSSSPE 67

Query: 115 STRAAPRMACFFQEKLRNRANPRAGNIPQ 29
++ R +C + +R R +PQ
Sbjct: 68 HPSSSLRSSCTSLDSIRATVGTRGDIVPQ 96


>tr|Q7NQT9|Q7NQT9_CHRVO Probable 2-nitropropane dioxygenase
OS=Chromobacterium violaceum GN=CV_4048 PE=4 SV=1
Length = 351

Score = 35.4 bits (80), Expect = 2.9
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2

Query: 107 SCGMGPAILLCPSSSAAHLWRQALPSLKP 193
+C +G A L CP S + LW+QAL + KP
Sbjct: 233 ACQLGTAFLRCPESGISPLWKQALAAAKP 261


>tr|Q4F9K3|Q4F9K3_9MAGN 3-hydroxy-methylglutaryl coenzyme A
reductase OS=Michelia chapensis GN=HMGr PE=2 SV=1
Length = 556

Score = 35.4 bits (80), Expect = 2.9
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3

Query: 474 RNPLLAVMSLPLPAMRTPLLILVAATSLPSRQRRRKQGDHLVGVAVRRT 620
+NP+ AV S P+PA L+ V + S+PS K GD A+RRT
Sbjct: 127 QNPIPAVHSPPIPADDADLVSAVVSGSMPSYSLESKLGDCKRAAAIRRT 175