DK953550 |
Clone id |
TST39A01NGRL0018_B03 |
Library |
TST39 |
Length |
709 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_B03. 5' end sequence. |
Accession |
DK953550 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1460Contig1 |
Sequence |
AAACGAAGAGACTGCGATGATGAGAATTTCTGCTTCAATATGTCTGGACTTCTGATGAGG ATCTCACCCGACATCCTCTTGAAGAGCACAAGTTCCTGAGCGGTCCTCCTCTTCATTAGC TGCTACGGTGCCTTTTCTTTATTAGCAGCTCTTCCACGCATCTGAAAACCAGCTTCTCGA GGTATTCTTCTTCTCTGCTCTTGAAGTTAAATGCGATGCGAAAGTGACGCCGCTGATGGA ACTTACCAGGCCTCGGGCGCTCTCCCAAGTGTCTGTGTAGGCCCAAATGACCCATCCCAC AGATGCAGCAACTCTGATATCTCAAGAATGGTCTGTAGATTCACCAACTCGTTTCTGTTA TCATCCTTTGCTTTGATTTCGGCAAAACTATGGCCATGCACATAAATGTAACTATGGCCT CTTGAAATCGGTATAAGGGGATTTGGCCTAACGGTAAAGCAACCGCCTCCGCCTTTCAGC ATGCCTGCTATGGCCTAACCCCTGCAATCTGCACCCATTGAACTAGCTGAATTTTGCTTG GGAAAAAAGGAGTCTCTTATCTTAAGAAAATTGCACATCCCACAGATGTCCCAACTCTGT CATCTTAAAAATGTCCTGTAGATGCACCAATACTTTTCTGTCATCATCCTTTTCTTTGAT TTTTATTCAACGGCGGTGAACTTTTTTTTTTAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P35400 |
Definition |
sp|P35400|GRM7_RAT Metabotropic glutamate receptor 7 OS=Rattus norvegicus |
Align length |
100 |
Score (bit) |
40.0 |
E-value |
0.012 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953550|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0018_B03, 5' (691 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P35400|GRM7_RAT Metabotropic glutamate receptor 7 OS=Rattus n... 40 0.012 sp|Q68ED2|GRM7_MOUSE Metabotropic glutamate receptor 7 OS=Mus mu... 40 0.012 sp|Q14831|GRM7_HUMAN Metabotropic glutamate receptor 7 OS=Homo s... 40 0.012 sp|Q5RDQ8|GRM7_PONAB Metabotropic glutamate receptor 7 OS=Pongo ... 40 0.015 sp|Q863I4|GRM6_RABIT Metabotropic glutamate receptor 6 OS=Orycto... 33 1.1 sp|P35349|GRM6_RAT Metabotropic glutamate receptor 6 OS=Rattus n... 33 1.4 sp|Q5NCH9|GRM6_MOUSE Metabotropic glutamate receptor 6 OS=Mus mu... 33 1.4 sp|O15303|GRM6_HUMAN Metabotropic glutamate receptor 6 OS=Homo s... 33 1.4 sp|P20471|NDVB_RHIME Protein ndvB OS=Rhizobium meliloti GN=ndvB ... 31 5.5 sp|Q87DJ2|CSD_XYLFT Probable cysteine desulfurase OS=Xylella fas... 31 7.2 sp|Q9PDA6|CSD_XYLFA Probable cysteine desulfurase OS=Xylella fas... 31 7.2
>sp|P35400|GRM7_RAT Metabotropic glutamate receptor 7 OS=Rattus norvegicus GN=Grm7 PE=1 SV=1 Length = 915
Score = 40.0 bits (92), Expect = 0.012 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 17/100 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWES-----------ARGLVS------SISGVTFASHLTSRAEKKNT 181 A VG +W +D+W S A G ++ ++ G F ++ TSR + N Sbjct: 302 ADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEG--FDAYFTSRTLENNR 359
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T++ +++ED C QE +G D Sbjct: 360 RNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD 399
>sp|Q68ED2|GRM7_MOUSE Metabotropic glutamate receptor 7 OS=Mus musculus GN=Grm7 PE=1 SV=1 Length = 915
Score = 40.0 bits (92), Expect = 0.012 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 17/100 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWES-----------ARGLVS------SISGVTFASHLTSRAEKKNT 181 A VG +W +D+W S A G ++ ++ G F ++ TSR + N Sbjct: 302 ADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEG--FDAYFTSRTLENNR 359
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T++ +++ED C QE +G D Sbjct: 360 RNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD 399
>sp|Q14831|GRM7_HUMAN Metabotropic glutamate receptor 7 OS=Homo sapiens GN=GRM7 PE=2 SV=1 Length = 915
Score = 40.0 bits (92), Expect = 0.012 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 17/100 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWES-----------ARGLVS------SISGVTFASHLTSRAEKKNT 181 A VG +W +D+W S A G ++ ++ G F ++ TSR + N Sbjct: 302 ADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEG--FDAYFTSRTLENNR 359
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T++ +++ED C QE +G D Sbjct: 360 RNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD 399
>sp|Q5RDQ8|GRM7_PONAB Metabotropic glutamate receptor 7 OS=Pongo abelii GN=GRM7 PE=2 SV=1 Length = 922
Score = 39.7 bits (91), Expect = 0.015 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 17/100 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWES-----------ARGLVS------SISGVTFASHLTSRAEKKNT 181 A VG +W +D+W S A G ++ ++ G F ++ TSR + N Sbjct: 302 ADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEG--FDAYFTSRTLENNR 359
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T+ +++ED C QE +G D Sbjct: 360 RNVWFAEYWEENFNCKLTIGGSKKEDTDRKCTGQERIGKD 399
>sp|Q863I4|GRM6_RABIT Metabotropic glutamate receptor 6 OS=Oryctolagus cuniculus GN=GRM6 PE=2 SV=1 Length = 868
Score = 33.5 bits (75), Expect = 1.1 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 15/113 (13%) Frame = -2
Query: 354 KRVGESTDHS*DIRVAASVGWVIWAYTDTWESARGLVSSISGVT---------------F 220 +RV E+T R A G +W +D+W S V S+ V F Sbjct: 277 RRVLEAT------RQANLTGHFLWVGSDSWGSKTSPVLSLEDVAVGAITILPKRASIDGF 330
Query: 219 ASHLTSRAEKKNTSRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 + +R+ + N WF++ W+ K T + + ++ + C +E +G D Sbjct: 331 DQYFMTRSLENNRRNIWFAEFWEENFNCKLTSSGGQSDEATRKCTGEERIGQD 383
>sp|P35349|GRM6_RAT Metabotropic glutamate receptor 6 OS=Rattus norvegicus GN=Grm6 PE=2 SV=1 Length = 871
Score = 33.1 bits (74), Expect = 1.4 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 17/115 (14%) Frame = -2
Query: 354 KRVGESTDHS*DIRVAASVGWVIWAYTDTW-----------ESARGLVS------SISGV 226 +RV E+T R A G +W +D+W E A G ++ SI G Sbjct: 280 RRVLEAT------RQANLTGHFLWVGSDSWGSKISPILNLEEEAVGAITILPKRASIDG- 332
Query: 225 TFASHLTSRAEKKNTSRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 F + +R+ + N WF++ W+ K T + + +D + C +E +G D Sbjct: 333 -FDQYFMTRSLENNRRNIWFAEFWEENFNCKLTSSGGQSDDSTRKCTGEERIGQD 386
>sp|Q5NCH9|GRM6_MOUSE Metabotropic glutamate receptor 6 OS=Mus musculus GN=Grm6 PE=2 SV=1 Length = 871
Score = 33.1 bits (74), Expect = 1.4 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 17/115 (14%) Frame = -2
Query: 354 KRVGESTDHS*DIRVAASVGWVIWAYTDTW-----------ESARGLVS------SISGV 226 +RV E+T R A G +W +D+W E A G ++ SI G Sbjct: 280 RRVLEAT------RQANLTGHFLWVGSDSWGSKISPILNLEEEAVGAITILPKRASIDG- 332
Query: 225 TFASHLTSRAEKKNTSRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 F + +R+ + N WF++ W+ K T + + +D + C +E +G D Sbjct: 333 -FDQYFMTRSLENNRRNIWFAEFWEENFNCKLTSSGGQSDDSTRKCTGEERIGQD 386
>sp|O15303|GRM6_HUMAN Metabotropic glutamate receptor 6 OS=Homo sapiens GN=GRM6 PE=1 SV=1 Length = 877
Score = 33.1 bits (74), Expect = 1.4 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 15/100 (15%) Frame = -2
Query: 315 RVAASVGWVIWAYTDTWESARGLVSSISGVT---------------FASHLTSRAEKKNT 181 R A G +W +D+W + + S+ V F + +R+ + N Sbjct: 293 RQANLTGHFLWVGSDSWGAKTSPILSLEDVAVGAITILPKRASIDGFDQYFMTRSLENNR 352
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T + + +D + C +E +G D Sbjct: 353 RNIWFAEFWEENFNCKLTSSGTQSDDSTRKCTGEERIGRD 392
>sp|P20471|NDVB_RHIME Protein ndvB OS=Rhizobium meliloti GN=ndvB PE=4 SV=2 Length = 2832
Score = 31.2 bits (69), Expect = 5.5 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +2
Query: 86 AQVPERSSSSLAATVPFLY*QLFHASENQLLEVFFFSALEVKCDAKVTPLME 241 A + E+ +S+L PF + +E ++L V+ +A +V+ A +TP E Sbjct: 40 ASLAEKGTSALPGFFPFEFRARHRENEKEILRVYRATAADVEAGASITPAAE 91
>sp|Q87DJ2|CSD_XYLFT Probable cysteine desulfurase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=csd PE=3 SV=1 Length = 416
Score = 30.8 bits (68), Expect = 7.2 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = +2
Query: 245 TRPRALSQVSV*AQMTHPTDAATLISQEWSVDSPTRFCYHPLL*FRQNYGHAHKCNYGL 421 T P + VS + TH D ATL+ E + C HPLL Q YG C L Sbjct: 337 TAPNKAAVVSFMIEGTHAHDLATLLDLEGVAVRSGQHCAHPLL---QYYGVTATCRASL 392
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8KBG5 |
Definition |
tr|A8KBG5|A8KBG5_XENTR LOC100127664 protein OS=Xenopus tropicalis |
Align length |
101 |
Score (bit) |
40.0 |
E-value |
0.14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953550|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0018_B03, 5' (691 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8KBG5|A8KBG5_XENTR LOC100127664 protein OS=Xenopus tropicali... 40 0.14 tr|Q8BKE3|Q8BKE3_MOUSE Putative uncharacterized protein OS=Mus m... 40 0.14 tr|Q1ZZG3|Q1ZZG3_MACFA Glutamate receptor, metabotropic 7 (Fragm... 40 0.14 tr|Q59G95|Q59G95_HUMAN Metabotropic glutamate receptor 7 variant... 40 0.14 tr|B7ZKK0|B7ZKK0_HUMAN GRM7 protein OS=Homo sapiens GN=GRM7 PE=2... 40 0.14 tr|B2R693|B2R693_HUMAN cDNA, FLJ92848, highly similar to Homo sa... 40 0.14 tr|A8UQA5|A8UQA5_CARAU Metabotropic glutamate receptor 7 (Fragme... 34 7.7 tr|A8SYE5|A8SYE5_9FIRM Putative uncharacterized protein OS=Copro... 34 10.0
>tr|A8KBG5|A8KBG5_XENTR LOC100127664 protein OS=Xenopus tropicalis GN=grm7 PE=2 SV=1 Length = 909
Score = 40.0 bits (92), Expect = 0.14 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 15/101 (14%) Frame = -2
Query: 318 IRVAASVGWVIWAYTDTWESARGLVSSISGVT---------------FASHLTSRAEKKN 184 ++ A VG W +DTW + G + V F ++ TSR + N Sbjct: 294 VKRADKVGHFHWVGSDTWGAKVGPIIQNEDVAEGAITILPKRATIEGFDAYFTSRTLENN 353
Query: 183 TSRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T+ +++ED C QE +G D Sbjct: 354 RRNVWFAEFWEENFNCKLTITGSKKEDTDRKCTGQERIGQD 394
>tr|Q8BKE3|Q8BKE3_MOUSE Putative uncharacterized protein OS=Mus musculus GN=Grm7 PE=2 SV=1 Length = 361
Score = 40.0 bits (92), Expect = 0.14 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 17/100 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWES-----------ARGLVS------SISGVTFASHLTSRAEKKNT 181 A VG +W +D+W S A G ++ ++ G F ++ TSR + N Sbjct: 94 ADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEG--FDAYFTSRTLENNR 151
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T++ +++ED C QE +G D Sbjct: 152 RNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD 191
>tr|Q1ZZG3|Q1ZZG3_MACFA Glutamate receptor, metabotropic 7 (Fragment) OS=Macaca fascicularis GN=GRM7 PE=2 SV=1 Length = 802
Score = 40.0 bits (92), Expect = 0.14 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 17/100 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWES-----------ARGLVS------SISGVTFASHLTSRAEKKNT 181 A VG +W +D+W S A G ++ ++ G F ++ TSR + N Sbjct: 189 ADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEG--FDAYFTSRTLENNR 246
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T++ +++ED C QE +G D Sbjct: 247 RNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD 286
>tr|Q59G95|Q59G95_HUMAN Metabotropic glutamate receptor 7 variant (Fragment) OS=Homo sapiens PE=2 SV=1 Length = 656
Score = 40.0 bits (92), Expect = 0.14 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 17/100 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWES-----------ARGLVS------SISGVTFASHLTSRAEKKNT 181 A VG +W +D+W S A G ++ ++ G F ++ TSR + N Sbjct: 57 ADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEG--FDAYFTSRTLENNR 114
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T++ +++ED C QE +G D Sbjct: 115 RNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD 154
>tr|B7ZKK0|B7ZKK0_HUMAN GRM7 protein OS=Homo sapiens GN=GRM7 PE=2 SV=1 Length = 824
Score = 40.0 bits (92), Expect = 0.14 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 17/100 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWES-----------ARGLVS------SISGVTFASHLTSRAEKKNT 181 A VG +W +D+W S A G ++ ++ G F ++ TSR + N Sbjct: 302 ADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEG--FDAYFTSRTLENNR 359
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T++ +++ED C QE +G D Sbjct: 360 RNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD 399
>tr|B2R693|B2R693_HUMAN cDNA, FLJ92848, highly similar to Homo sapiens glutamate receptor, metabotropic 7 (GRM7), mRNA OS=Homo sapiens PE=2 SV=1 Length = 915
Score = 40.0 bits (92), Expect = 0.14 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 17/100 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWES-----------ARGLVS------SISGVTFASHLTSRAEKKNT 181 A VG +W +D+W S A G ++ ++ G F ++ TSR + N Sbjct: 302 ADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEG--FDAYFTSRTLENNR 359
Query: 180 SRSWFSDAWKSC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ K T++ +++ED C QE +G D Sbjct: 360 RNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD 399
>tr|A8UQA5|A8UQA5_CARAU Metabotropic glutamate receptor 7 (Fragment) OS=Carassius auratus GN=mGluR7 PE=4 SV=1 Length = 248
Score = 34.3 bits (77), Expect = 7.7 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 18/101 (17%) Frame = -2
Query: 309 AASVGWVIWAYTDTWESARGLV-----SSISGVT----------FASHLTSRAEKKNTSR 175 A VG +W +D+W + + ++I VT F ++ SR + N Sbjct: 35 ADQVGHFLWIGSDSWGAKNSPIQGLEDAAIGAVTILPKRDSIEGFDTYFISRTLENNRRN 94
Query: 174 SWFSDAWK---SC**RKGTVAANEEEDRSGTCALQEDVG*D 61 WF++ W+ +C ++++++ED S C QE +G D Sbjct: 95 VWFAEFWEENFNC----KLMSSSKKEDTSRKCTGQERIGTD 131
>tr|A8SYE5|A8SYE5_9FIRM Putative uncharacterized protein OS=Coprococcus eutactus ATCC 27759 GN=COPEUT_02809 PE=4 SV=1 Length = 184
Score = 33.9 bits (76), Expect = 10.0 Identities = 17/64 (26%), Positives = 33/64 (51%) Frame = -3
Query: 458 FTVRPNPLIPISRGHSYIYVHGHSFAEIKAKDDNRNELVNLQTILEISELLHLWDGSFGP 279 F + +P I I R S + GH IK D L +++ +++I ++LH++D + P Sbjct: 96 FVLTIDPAINILRIESRVASGGHDVEHIKVIDRYYKSLGHIKELIDICDILHVYDNTESP 155
Query: 278 TQTL 267 + + Sbjct: 156 KRII 159
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