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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953553
Clone id TST39A01NGRL0018_B06
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_B06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACAAATGCGCGTA
CATACCTTCCTACGCGTACACCCCCGCCGACCTCACACGTAGGTTCAGCGCAGCTCCAGG
TTGAAGTCGCAGTACTGCCATGTACTCCTCCTGGAGTATTCTCATGGTGAAGAAGCAGGA
ACGCAGGGCTCTTTCGGGTGAGTAACTGGCACACCGCTACCGAGGGCTTTTGTCAGCGGA
CAGTTACAGTGCATGATGACCATCTCCGAGCTCTGCACATTTCGCACGCAGGGTGAACCT
GGTGCGTATTCCAGGATTCAGAGCTGCCCAAGGGACCCCTGCTGCACTATCTTCTTTACT
GACTCCTCCTCTTTGGCGAGATTGTGTGGCCTCGGCTATTGCAGAATGGGTATCCCGCGT
CTCTGCTCAAAGGATACTTTGCGACCATACATTCAGCAGCAATCCAGTACTCTTCGGGGA
TGTTATGGATCTGGGACGGATGTGAACGATTCAAGATCAGAAAGGATAGGGCCTCATGTG
ACCAAAACTTGGTTTTTGCCGA
■■Homology search results ■■ -
sp_hit_id O02305
Definition sp|O02305|NH217_CAEEL Nuclear hormone receptor family member nhr-217 OS=Caenorhabditis elegans
Align length 65
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953553|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_B06, 5'
         (562 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O02305|NH217_CAEEL Nuclear hormone receptor family member nhr...    33   1.3  
sp|P78722|LAC2_PODAN Laccase-2 OS=Podospora anserina GN=LAC2 PE=...    32   1.7  
sp|P28828|PTPRM_MOUSE Receptor-type tyrosine-protein phosphatase...    32   2.8  
sp|P29127|XYNA_NEOPA Bifunctional endo-1,4-beta-xylanase A OS=Ne...    30   8.2  
sp|P28827|PTPRM_HUMAN Receptor-type tyrosine-protein phosphatase...    30   8.2  
sp|Q8IY37|DHX37_HUMAN Probable ATP-dependent RNA helicase DHX37 ...    30   8.2  

>sp|O02305|NH217_CAEEL Nuclear hormone receptor family member
           nhr-217 OS=Caenorhabditis elegans GN=nhr-217 PE=2 SV=2
          Length = 383

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 289 ACEMCRARRWSSCTVTVR*QKPSVAVCQLLT-RKSPAFLLLHHENTPGGVHGSTATSTWS 113
           A + CRA R+  C  +   Q+  V   QLLT R +P ++L   +NT G +  + A+ T  
Sbjct: 102 ARKSCRACRFERCVKSAGLQRDYVR--QLLTPRNTPLYILNRQDNTGGEIVRAFASPTMP 159

Query: 112 CAEPT 98
             EPT
Sbjct: 160 KPEPT 164


>sp|P78722|LAC2_PODAN Laccase-2 OS=Podospora anserina GN=LAC2 PE=2
           SV=1
          Length = 621

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +1

Query: 409 GIPRLCSKDTLRPYIQQQSS----TLRGCYGSGTDVN-DSRSERIGPHVTKTWFL 558
           G+PR  ++D LRP  ++QSS      R C+  G D+N D         VT+T+ L
Sbjct: 29  GVPREVTRDLLRPVEERQSSCHTAANRACWAPGFDINTDYEVSTPNTGVTRTYTL 83


>sp|P28828|PTPRM_MOUSE Receptor-type tyrosine-protein phosphatase mu
            OS=Mus musculus GN=Ptprm PE=2 SV=1
          Length = 1452

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = -2

Query: 504  HIRPRSITSPKSTGLLLNVWSQSIL*AETRDTHSAIAEATQSRQRGGVSKEDSAAGVPW- 328
            ++  RS++SP S  +  N  S S+  +   D    +A  T S  +    K+  AA VP+ 
Sbjct: 813  NLNGRSVSSPSSFTMKTNTLSTSVPNSYYPDETHTMASDTSSLAQPHTYKKREAADVPYQ 872

Query: 327  -AALNPGIRTRFTL----RAKCAE 271
               L+P IR    L    + KCAE
Sbjct: 873  TGQLHPAIRVADLLQHITQMKCAE 896


>sp|P29127|XYNA_NEOPA Bifunctional endo-1,4-beta-xylanase A
           OS=Neocallimastix patriciarum GN=XYNA PE=1 SV=1
          Length = 607

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = +1

Query: 277 TFRTQGEPGAYSRIQS--------CPRDPCCTIFFTDSSSLARLCGLGYCRMGIPRLCSK 432
           T RT+  P  Y++  +        C  DP C +++TD      +    +C  G+ +  SK
Sbjct: 511 TTRTKSLPTNYNKCSARITAQGYKCCSDPNCVVYYTDEDGTWGVENNDWCGCGVEQCSSK 570

Query: 433 DTLRPY 450
            T + Y
Sbjct: 571 ITSQGY 576


>sp|P28827|PTPRM_HUMAN Receptor-type tyrosine-protein phosphatase mu
            OS=Homo sapiens GN=PTPRM PE=1 SV=2
          Length = 1452

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = -2

Query: 504  HIRPRSITSPKSTGLLLNVWSQSIL*AETRDTHSAIAEATQSRQRGGVSKEDSAAGVPW- 328
            ++  RS++SP S  +  N  S S+  +   D    +A  T S  +    K+   A VP+ 
Sbjct: 813  NLNGRSVSSPSSFTMKTNTLSTSVPNSYYPDETHTMASDTSSLVQSHTYKKREPADVPYQ 872

Query: 327  -AALNPGIRTRFTL----RAKCAE 271
               L+P IR    L    + KCAE
Sbjct: 873  TGQLHPAIRVADLLQHITQMKCAE 896


>sp|Q8IY37|DHX37_HUMAN Probable ATP-dependent RNA helicase DHX37
            OS=Homo sapiens GN=DHX37 PE=1 SV=1
          Length = 1157

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = -2

Query: 330  WAALNPGIRTRFTLRAKCAELGDGHHAL*LSADKSPR*RCASY 202
            WA L P  RT   LRA  AE  D H AL  +  K+P+   A Y
Sbjct: 1095 WARLQP--RTESLLRALVAEKADCHEALLAAWKKNPKYLLAEY 1135
tr_hit_id B6LF09
Definition tr|B6LF09|B6LF09_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 87
Score (bit) 35.0
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953553|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_B06, 5'
         (562 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6LF09|B6LF09_BRAFL Putative uncharacterized protein OS=Branc...    35   2.8  
tr|A7SX06|A7SX06_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   4.7  
tr|A9G5Z8|A9G5Z8_SORC5 Shikimate dehydrogenase OS=Sorangium cell...    34   4.8  
tr|A1CR92|A1CR92_ASPCL tRNA-specific adenosine deaminase, putati...    34   4.8  
tr|Q7PV23|Q7PV23_ANOGA AGAP011617-PA (Fragment) OS=Anopheles gam...    34   6.3  
tr|Q8K347|Q8K347_MOUSE BC048403 protein (Fragment) OS=Mus muscul...    33   8.2  
tr|A0YY24|A0YY24_9CYAN Recombinase OS=Lyngbya sp. PCC 8106 GN=L8...    33   8.2  

>tr|B6LF09|B6LF09_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_69779 PE=4 SV=1
          Length = 586

 Score = 35.0 bits (79), Expect = 2.8
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = +1

Query: 262 ISELCTFRTQGEPGAYSRIQSCPRDPCCTIFFTDSSSLARL---CGLGYCRMGIPRLCSK 432
           +S + +     +P A+   Q  P    C I   DS SL+ +   CG  +C   +   C  
Sbjct: 258 LSGISSLNISSKPSAWELEQQAP---ICGICLRDSPSLSHVMEECGHVFCEDCLSTHCH- 313

Query: 433 DTLRPYIQQQSSTLRGCYGSGTDVNDS 513
                Y+ +Q + +  C GSG DVN S
Sbjct: 314 -----YVMEQGTWIIKCAGSGCDVNIS 335


>tr|A7SX06|A7SX06_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g43654 PE=4 SV=1
          Length = 184

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
 Frame = -3

Query: 305 APGSPCVRNVQSSEMVIMH-------CNCPLTKALGSGVPVTHPKEPCVPASSP 165
           APG+PCV  V  S   +         C  P T  +  G P   P  PCV  S+P
Sbjct: 40  APGTPCVALVPPSTPCVAPGTPCVSPCVAPSTPCVARGTPCVAPGTPCVSPSTP 93


>tr|A9G5Z8|A9G5Z8_SORC5 Shikimate dehydrogenase OS=Sorangium
           cellulosum (strain So ce56) GN=aroE3 PE=4 SV=1
          Length = 328

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = -2

Query: 492 RSITSPKSTGLLLNVWSQSIL*AETRDTHSAIAEATQSRQRGGVSKEDSAAGVPWAALNP 313
           RSI+S  S  L LN WS+  + A+       I +AT +   GG   E+    +PW AL+P
Sbjct: 206 RSISSKSSVALRLN-WSEFTVAADL------IIQATSAGMLGGPPGEEVTGIIPWDALSP 258

Query: 312 GI 307
            +
Sbjct: 259 SV 260


>tr|A1CR92|A1CR92_ASPCL tRNA-specific adenosine deaminase, putative
           OS=Aspergillus clavatus GN=ACLA_028890 PE=4 SV=1
          Length = 526

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = -2

Query: 477 PKSTGLLLNVWSQSIL*AETRDTHSAIAEA----TQSRQRGGVSKEDSAAGVPWAALNPG 310
           PK  GL+L+ W   IL A     H  ++E      + RQRG  S  D+A G P    +P 
Sbjct: 78  PKCKGLVLHDWHAEIL-ALRAFNHWLLSECHVVLAKERQRGASSAADTAGGTP----SPF 132

Query: 309 IRTRFTLRA 283
           IR + T+R+
Sbjct: 133 IRWKHTVRS 141


>tr|Q7PV23|Q7PV23_ANOGA AGAP011617-PA (Fragment) OS=Anopheles gambiae
            GN=AGAP011617 PE=4 SV=4
          Length = 1264

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
 Frame = -1

Query: 310  NTHQVHPACEMCRARRW-------SSCTVTVR--*QKPSVAVCQLLTRKSPAFLLLHHEN 158
            NT QVHP   MCR R +       S CT  VR   ++P+V VC       PA  +LHH +
Sbjct: 802  NTCQVHPVETMCRNREYGAVYPHPSDCTQFVRCAGEQPNVQVC-------PAGHVLHHSS 854

Query: 157  ---TPGGVHGSTATSTWSCAEPTCE 92
                PG       T+T    E  C+
Sbjct: 855  MSCRPGD------TNTCEVMENVCQ 873


>tr|Q8K347|Q8K347_MOUSE BC048403 protein (Fragment) OS=Mus musculus
           GN=BC048403 PE=2 SV=1
          Length = 95

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
 Frame = -2

Query: 204 YSPERALRSCFFTMRILQEEY----MAVLRLQPGAALNLRVR---SAGVY 76
           +S   AL SC FT   ++ ++    + +LRL PGA +N+RVR   S+G+Y
Sbjct: 42  FSALAALASCEFTGERMERDHGSIELLLLRLSPGAPVNVRVRSRLSSGLY 91


>tr|A0YY24|A0YY24_9CYAN Recombinase OS=Lyngbya sp. PCC 8106
           GN=L8106_25815 PE=4 SV=1
          Length = 431

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 238 GQLQCMMTISELCTFRTQGEPGAYSRIQSCPRDPCC 345
           G+  C+MT+S + T+R   E   Y R  +CPR P C
Sbjct: 255 GECSCLMTVSRVTTYRKNRE-YLYLRPTACPRQPKC 289