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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953562
Clone id TST39A01NGRL0018_B15
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_B15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATTCGCGTGTGTAGGCCACAGAGGCACGCCATCGCCGCGAGCTGGTTTGGGGTCTCTGAC
GATGGCTTGCAGCAGCGGCAACAGAGCCATGCAGGCGCCCTCTTCTCTCTCCTCCTGCGA
GGCCTCCTCTCTGCGTGGCCTCTCTTTGGCTCCTGCCTTGAGGCCCCGAGCTCGATCGCC
GCCTTCTTCCTCTGCTCCTCATCACACTCTGAAGGTCATGGCTATGGCGCCCAAAAACAA
GGTGAATGCATATGATTCTGATTGGAACAAAACATGGTTCGGAGCCGGGATGTTTGCCGA
AAATACAGAGGCTGCACCTATGAACATTGTGCAGAAGCTGGAGAAGAAGAAGCTTCTTAG
CCAAGTAGAGAAGGCAGGGCTTCTTTCAAAGGCAGAGAGTGCTGGCCTCACTCTCTCCTC
AATAGAGAAGATGGGTTTGTTGTCGAAGGCCGAGGATCTTGGTCTGTTGAGCTTTGCAGA
GAGCTTCGCAACATCATCACCTGCACTTCTCGCATCTCTGTCATTGCCTCTCATTGTCCT
ATCTGTT
■■Homology search results ■■ -
sp_hit_id O74324
Definition sp|O74324|YH04_SCHPO Uncharacterized protein C1685.04 OS=Schizosaccharomyces pombe
Align length 54
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953562|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_B15, 5'
         (547 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O74324|YH04_SCHPO Uncharacterized protein C1685.04 OS=Schizos...    32   2.0  
sp|O66976|HISX_AQUAE Histidinol dehydrogenase OS=Aquifex aeolicu...    32   2.6  
sp|A1T041|RL9_PSYIN 50S ribosomal protein L9 OS=Psychromonas ing...    31   4.5  
sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo sap...    31   4.5  
sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana GN=CAS...    31   4.5  
sp|O13817|SEC7C_SCHPO Protein transport protein sec73 OS=Schizos...    30   9.9  

>sp|O74324|YH04_SCHPO Uncharacterized protein C1685.04
           OS=Schizosaccharomyces pombe GN=SPBC1685.04 PE=2 SV=1
          Length = 325

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 302 NTEAAPMNIVQKLEKKKLLSQVEKAGLLSKAESAGLTLSSIEK-MGLLSKAEDL 460
           NT    +     LEKKK LS  ++   L +   A   +SS+EK M +L K EDL
Sbjct: 167 NTLVKRLQTYDNLEKKKALSMEDRLLTLQEQYDAHANVSSLEKRMEVLKKREDL 220


>sp|O66976|HISX_AQUAE Histidinol dehydrogenase OS=Aquifex aeolicus
           GN=hisD PE=3 SV=1
          Length = 426

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +2

Query: 218 MAMAPKNKVNAYDSDWNKTWFGAGMF--AENTEAAPMNIVQKLEK--KKLLSQVEKAGLL 385
           M   P   +   D   N TW  A M   AE+ E A   ++   E+   K+  +VE+  LL
Sbjct: 228 MIAGPSEVLVIADERANPTWVAADMLSQAEHDELAASILLTPSEELANKVKEEVER--LL 285

Query: 386 SKAESAGLTLSSIEKMGLLSKAEDL 460
           S+ E   +   S+EK G +   +DL
Sbjct: 286 SQLERKEIAQKSLEKFGTIFLVKDL 310


>sp|A1T041|RL9_PSYIN 50S ribosomal protein L9 OS=Psychromonas
           ingrahamii (strain 37) GN=rplI PE=3 SV=1
          Length = 150

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 269 KTWFGAGMFAENTEAAPMNI--VQKLEKKKLLSQVEKAGLLSKAESAGLTLSSIEKMGLL 442
           K+ +         +A P N   ++  E +++  + ++A  L+ AE  G  L+++E + + 
Sbjct: 22  KSGYARNFLFPQQKAVPANKANLEAFETRRVELEAKQAANLAAAEKRGAALAALEAVVIA 81

Query: 443 SKAEDLGLL 469
           SKA D+G L
Sbjct: 82  SKAGDVGKL 90


>sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo
           sapiens GN=CEP135 PE=1 SV=1
          Length = 1140

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 299 ENTEA-APMNIVQKLEKKKLLSQVEKAGLLSKAESAGLTLSSIEKMGLLSKAE 454
           E+T+  AP NIV  +EK+K L+  +   ++++ E+    L  IE++ L  K+E
Sbjct: 553 ESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSE 605


>sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana GN=CASP
           PE=1 SV=2
          Length = 689

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +2

Query: 209 LKVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQV-EKAGLL 385
           +K++     N + A   DW+    G  M    +     N   + E  +L  Q+ EKA LL
Sbjct: 380 VKILQAVGYNSIEA--EDWDAATTGEEMSKMESLLLDKNRKMEHEVTQLKVQLSEKASLL 437

Query: 386 SKAESAG--LTLSSIEKMGLLSKAED 457
            KAE+ G  LT    E+  L+ K ED
Sbjct: 438 EKAEAKGEELTAKVNEQQRLIQKLED 463


>sp|O13817|SEC7C_SCHPO Protein transport protein sec73
           OS=Schizosaccharomyces pombe GN=sec73 PE=2 SV=2
          Length = 1082

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -3

Query: 482 SLQSSTDQDPRPSTTNPSSL 423
           SL+SS D D RPS+T+PS+L
Sbjct: 902 SLESSNDIDDRPSSTSPSTL 921
tr_hit_id A9TMU4
Definition tr|A9TMU4|A9TMU4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 90
Score (bit) 147.0
E-value 5.0e-34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953562|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_B15, 5'
         (547 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TMU4|A9TMU4_PHYPA Predicted protein OS=Physcomitrella paten...   147   5e-34
tr|A9TJ04|A9TJ04_PHYPA Predicted protein OS=Physcomitrella paten...   142   9e-33
tr|A9S8Z7|A9S8Z7_PHYPA Predicted protein (Fragment) OS=Physcomit...   133   5e-30
tr|A9NZ32|A9NZ32_PICSI Putative uncharacterized protein OS=Picea...   129   1e-28
tr|B6TFL9|B6TFL9_MAIZE Putative uncharacterized protein OS=Zea m...   129   1e-28
tr|B4FRC0|B4FRC0_MAIZE Putative uncharacterized protein OS=Zea m...   124   3e-27
tr|Q0JLN9|Q0JLN9_ORYSJ cDNA clone:J023103B06, full insert sequen...   123   7e-27
tr|B7FFF0|B7FFF0_MEDTR Putative uncharacterized protein OS=Medic...   123   7e-27
tr|A2WRV9|A2WRV9_ORYSI Putative uncharacterized protein OS=Oryza...   123   7e-27
tr|A5C347|A5C347_VITVI Putative uncharacterized protein (Chromos...   121   3e-26
tr|A9PJV1|A9PJV1_POPJC Putative uncharacterized protein OS=Popul...   119   1e-25
tr|Q9SSF7|Q9SSF7_ARATH F25A4.30 protein OS=Arabidopsis thaliana ...   119   1e-25
tr|Q94F10|Q94F10_ARATH Putative uncharacterized protein (Putativ...   119   1e-25
tr|B7FKD0|B7FKD0_MEDTR Putative uncharacterized protein OS=Medic...   117   5e-25
tr|A9PGF4|A9PGF4_POPTR Putative uncharacterized protein OS=Popul...    67   8e-10
tr|A3CIP9|A3CIP9_ORYSJ Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A7QI04|A7QI04_VITVI Chromosome chr17 scaffold_101, whole geno...    65   2e-09
tr|Q2QN86|Q2QN86_ORYSJ Os12g0575000 protein OS=Oryza sativa subs...    65   3e-09
tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea...    65   3e-09
tr|B4FV96|B4FV96_MAIZE Putative uncharacterized protein OS=Zea m...    64   5e-09
tr|B8BMN2|B8BMN2_ORYSI Putative uncharacterized protein OS=Oryza...    64   7e-09
tr|A9S2G0|A9S2G0_PHYPA Predicted protein (Fragment) OS=Physcomit...    61   3e-08
tr|Q9SD79|Q9SD79_ARATH Putative uncharacterized protein F13G24.2...    61   4e-08
tr|Q8VYV1|Q8VYV1_ARATH AT5g08050/F13G24_250 OS=Arabidopsis thali...    61   4e-08
tr|Q2QN87|Q2QN87_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    57   6e-07
tr|A2ZE10|A2ZE10_ORYSI Putative uncharacterized protein OS=Oryza...    47   7e-04
tr|Q2R4U2|Q2R4U2_ORYSJ Putative uncharacterized protein OS=Oryza...    47   9e-04
tr|B7G128|B7G128_PHATR Predicted protein OS=Phaeodactylum tricor...    44   0.007
tr|B8LBT9|B8LBT9_THAPS Predicted protein OS=Thalassiosira pseudo...    43   0.012
tr|A6R060|A6R060_AJECN Glycyl-tRNA synthetase 1 OS=Ajellomyces c...    35   0.38 

>tr|A9TMU4|A9TMU4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_147884 PE=4 SV=1
          Length = 152

 Score =  147 bits (370), Expect = 5e-34
 Identities = 73/90 (81%), Positives = 80/90 (88%)
 Frame = +2

Query: 224 MAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSKAESA 403
           MAPK KVNAYD  W+K WFGAG+FAENTE  P+NIV+KLEKKKLLSQVEKAGLLSKAES 
Sbjct: 1   MAPKKKVNAYDEGWSKQWFGAGIFAENTETEPVNIVKKLEKKKLLSQVEKAGLLSKAESL 60

Query: 404 GLTLSSIEKMGLLSKAEDLGLLSFAESFAT 493
           G++LS IEK+GLLSKAEDLGLLS AE FAT
Sbjct: 61  GVSLSQIEKLGLLSKAEDLGLLSLAEKFAT 90


>tr|A9TJ04|A9TJ04_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_146224 PE=4 SV=1
          Length = 165

 Score =  142 bits (359), Expect = 9e-33
 Identities = 71/94 (75%), Positives = 82/94 (87%)
 Frame = +2

Query: 212 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 391
           +V AMAPK KVNAYD  W+K WFGAG+FAENTE   ++IV+KLEKKKLLSQVEKAGLLSK
Sbjct: 10  QVRAMAPKKKVNAYDDAWSKQWFGAGLFAENTETESVDIVKKLEKKKLLSQVEKAGLLSK 69

Query: 392 AESAGLTLSSIEKMGLLSKAEDLGLLSFAESFAT 493
           AES G++LS IEK+GLLSKAEDLGLL+ AE+F T
Sbjct: 70  AESLGVSLSQIEKLGLLSKAEDLGLLTLAENFVT 103


>tr|A9S8Z7|A9S8Z7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_48633 PE=4 SV=1
          Length = 117

 Score =  133 bits (335), Expect = 5e-30
 Identities = 69/94 (73%), Positives = 80/94 (85%)
 Frame = +2

Query: 212 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 391
           +V AMAPK KVNA+D  W+K WFGAG+FAENTE   ++IV+KLEKK LLSQVEKAGLLSK
Sbjct: 5   QVRAMAPKKKVNAHDDAWSKQWFGAGVFAENTETESVDIVKKLEKK-LLSQVEKAGLLSK 63

Query: 392 AESAGLTLSSIEKMGLLSKAEDLGLLSFAESFAT 493
           AES G++LS IEK+GLLSKAEDLGLL+ AE F T
Sbjct: 64  AESLGVSLSQIEKLGLLSKAEDLGLLTLAEKFVT 97


>tr|A9NZ32|A9NZ32_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 209

 Score =  129 bits (324), Expect = 1e-28
 Identities = 64/95 (67%), Positives = 77/95 (81%)
 Frame = +2

Query: 209 LKVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLS 388
           L ++AMAPK KVN YD +W K WFGAG+F E  E   ++I++KLEK+K+LS VEKAGLLS
Sbjct: 54  LLILAMAPKKKVNKYDDNWKKQWFGAGIFLEGDEDVDVDIIKKLEKRKVLSGVEKAGLLS 113

Query: 389 KAESAGLTLSSIEKMGLLSKAEDLGLLSFAESFAT 493
           KA+  GL+LSSIEKMGLLSKAEDLGLLS AE  A+
Sbjct: 114 KADELGLSLSSIEKMGLLSKAEDLGLLSLAEKVAS 148


>tr|B6TFL9|B6TFL9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 189

 Score =  129 bits (323), Expect = 1e-28
 Identities = 63/93 (67%), Positives = 76/93 (81%)
 Frame = +2

Query: 212 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 391
           KV AMAPK KVN YD  W+K WFGAG+FAE +E   +++ +KLE++K+LS VEKAGLLSK
Sbjct: 33  KVTAMAPKKKVNRYDESWSKQWFGAGIFAEGSEEVSVDVFKKLERRKVLSTVEKAGLLSK 92

Query: 392 AESAGLTLSSIEKMGLLSKAEDLGLLSFAESFA 490
           AE  GLTLSS+EK+GLLSKAEDLGLLS  E+ A
Sbjct: 93  AEELGLTLSSLEKLGLLSKAEDLGLLSLVETAA 125


>tr|B4FRC0|B4FRC0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 153

 Score =  124 bits (311), Expect = 3e-27
 Identities = 60/89 (67%), Positives = 73/89 (82%)
 Frame = +2

Query: 224 MAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSKAESA 403
           MAPK KVN YD  W+K WFGAG+FAE +E   +++ +KLE++K+LS VEKAGLLSKAE  
Sbjct: 1   MAPKKKVNRYDESWSKQWFGAGIFAEGSEEVSVDVFKKLERRKVLSTVEKAGLLSKAEEL 60

Query: 404 GLTLSSIEKMGLLSKAEDLGLLSFAESFA 490
           GLTLSS+EK+GLLSKAEDLGLLS  E+ A
Sbjct: 61  GLTLSSLEKLGLLSKAEDLGLLSLVETAA 89


>tr|Q0JLN9|Q0JLN9_ORYSJ cDNA clone:J023103B06, full insert sequence
           OS=Oryza sativa subsp. japonica GN=Os01g0585300 PE=2
           SV=1
          Length = 187

 Score =  123 bits (308), Expect = 7e-27
 Identities = 59/93 (63%), Positives = 76/93 (81%)
 Frame = +2

Query: 212 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 391
           KV AMAP+ KVN YD  W+K WFGAG+FAE +E   +++ +KLE++K+LS VEKAGLLS+
Sbjct: 31  KVTAMAPQKKVNRYDEKWSKQWFGAGIFAEGSEEVEVDVFKKLERRKVLSTVEKAGLLSR 90

Query: 392 AESAGLTLSSIEKMGLLSKAEDLGLLSFAESFA 490
           AE  G+TLSS+E++GLLSKAEDLGLLS  E+ A
Sbjct: 91  AEELGVTLSSLEELGLLSKAEDLGLLSLVEAAA 123


>tr|B7FFF0|B7FFF0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 193

 Score =  123 bits (308), Expect = 7e-27
 Identities = 60/92 (65%), Positives = 73/92 (79%)
 Frame = +2

Query: 215 VMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSKA 394
           V AMAPKNKVN Y+ +W K WFGAG+F E +E   +++ +KLEK+K+LS VEKAGLLSKA
Sbjct: 38  VFAMAPKNKVNKYNDNWKKQWFGAGIFYEGSEEVEVDVFKKLEKRKVLSNVEKAGLLSKA 97

Query: 395 ESAGLTLSSIEKMGLLSKAEDLGLLSFAESFA 490
           E  G+TLSSIEK+GL SKAE+LGLLS  E  A
Sbjct: 98  EEFGVTLSSIEKLGLFSKAEELGLLSLLEKLA 129


>tr|A2WRV9|A2WRV9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02598 PE=4 SV=1
          Length = 187

 Score =  123 bits (308), Expect = 7e-27
 Identities = 59/93 (63%), Positives = 76/93 (81%)
 Frame = +2

Query: 212 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 391
           KV AMAP+ KVN YD  W+K WFGAG+FAE +E   +++ +KLE++K+LS VEKAGLLS+
Sbjct: 31  KVTAMAPQKKVNRYDEKWSKQWFGAGIFAEGSEEVEVDVFKKLERRKVLSTVEKAGLLSR 90

Query: 392 AESAGLTLSSIEKMGLLSKAEDLGLLSFAESFA 490
           AE  G+TLSS+E++GLLSKAEDLGLLS  E+ A
Sbjct: 91  AEELGVTLSSLEELGLLSKAEDLGLLSLVEAAA 123


>tr|A5C347|A5C347_VITVI Putative uncharacterized protein (Chromosome
           chr17 scaffold_101, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00000090001 PE=4 SV=1
          Length = 193

 Score =  121 bits (303), Expect = 3e-26
 Identities = 58/95 (61%), Positives = 73/95 (76%)
 Frame = +2

Query: 209 LKVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLS 388
           L+++AMA K KVN YD +W K WFGAG+F E +E   +++ + LEKKK+LS VEK+GLLS
Sbjct: 36  LRILAMASKKKVNRYDENWKKEWFGAGIFVEGSEEVEVDVFKNLEKKKVLSNVEKSGLLS 95

Query: 389 KAESAGLTLSSIEKMGLLSKAEDLGLLSFAESFAT 493
           KAE  G TLSSIEK+G+ SKAEDLGLLS  E  A+
Sbjct: 96  KAEELGFTLSSIEKLGVFSKAEDLGLLSLLEKAAS 130