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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953570
Clone id TST39A01NGRL0018_B24
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_B24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TCTCGGTCCTTTTTGCTCTCCTCCTGCCAGAGGATGAGGCGCGCGCCAGCAGGTGCTGTC
CTTGCGAGAAGACGGCTGCACAACAGGTTATGGAAGGTGATTGCATTCAAGGGGGTTGCT
CTACAGGCTCAGGTGGCGAGGACGTGGCAGCAAGAGCTTTTTCATGCGTTGTTCTGCTCG
TTTAATGCCGCAGGCGGGCTTCTCAAGGTCGTTGAAGGCGATCGTGCAGGCTGAGGTTAT
GAGCACTGATTGTGTTGCTCTTCGTGGTTCAGTACACGTGCTGAATGGAGCACGAGACAT
GTAATTTCCATGTACTTATTGTAGCCTATATGACAGGCCAGAAAGGGCAGAAAAATGCTT
TGTAATAGGTTCTTGTTTCGGGTGGTTATCATTATATTTGTGTCATGGCAGCAAGTATGA
GGATTTGTTTTTGATGTATGAGCTTTTTGAGCTACATTTATCTAATGGAAGATTCTTTGT
CTGTCCTGCTTTGGTACAAGCTTTTGAGCCTACATTAATCCTTAGGTGGAAAGAATTCTC
TCCTCTTAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6IR37
Definition sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus musculus
Align length 26
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953570|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_B24, 5'
         (547 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=M...    32   1.5  
sp|Q9SMX5|AGD4_ARATH ADP-ribosylation factor GTPase-activating p...    32   2.6  
sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein...    31   3.4  

>sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus
           musculus GN=Zdhhc24 PE=2 SV=2
          Length = 284

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 341 LACHIGYNKYMEITCLVLHSARVLNH 264
           L C +G++ Y    CL+LHSA VL H
Sbjct: 127 LGCCVGFHNYRPFLCLLLHSAGVLLH 152


>sp|Q9SMX5|AGD4_ARATH ADP-ribosylation factor GTPase-activating
           protein AGD4 OS=Arabidopsis thaliana GN=AGD4 PE=2 SV=2
          Length = 775

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -3

Query: 470 FH*INVAQKAHTSKTNPHTCCHDTNIMITTRNKNLLQSIFLPFLACHIGYNKYMEITCLV 291
           +H I+ A+KA   + +P  C     I  +   ++ LQ   L  +ACHIG +  +E   L+
Sbjct: 649 YHHIDAAEKAVKKRHDPTVC---QRIKESNEPRSCLQGCSLLHVACHIGDSVLLE---LL 702

Query: 290 LHSARVLNHEEQHNQ 246
           L     LN  + H +
Sbjct: 703 LQFGADLNIRDYHGR 717


>sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein
           tatB homolog OS=Pseudomonas stutzeri (strain A1501)
           GN=tatB PE=3 SV=1
          Length = 139

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 290 LHSARVLNHEEQHNQCS*PQPARSPSTTLRSPPA 189
           LH+ R+L+ E +  Q   P PA +P+ T  SPP+
Sbjct: 63  LHNERILDLEREMKQSIMPPPASNPAATPPSPPS 96
tr_hit_id B6PLA8
Definition tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 71
Score (bit) 35.4
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953570|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_B24, 5'
         (547 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein OS=Branc...    35   2.0  
tr|B6IP01|B6IP01_RHOCS Putative uncharacterized protein OS=Rhodo...    35   3.4  
tr|B3RXR4|B3RXR4_TRIAD Putative uncharacterized protein OS=Trich...    34   4.4  
tr|Q4DLQ5|Q4DLQ5_TRYCR Putative uncharacterized protein OS=Trypa...    34   4.4  
tr|B8P5Z3|B8P5Z3_9APHY Predicted protein OS=Postia placenta Mad-...    33   7.5  

>tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_116539 PE=4 SV=1
          Length = 370

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -3

Query: 335 CHIGYNKYMEITCLVLHSARVLNHEEQHNQ------CS*PQPARSPSTTLRSPPAALNEQ 174
           C  G +K+ E  C +  S   +N + ++N       C   +P   P   L SPPA  N Q
Sbjct: 106 CDCGNSKFPENKCKLDPSKAPVNTDNKYNHNFHGLYCICDRPYPDPDDEL-SPPAFFNPQ 164

Query: 173 NNA*KSSCCHV 141
           NN    +CC++
Sbjct: 165 NNTKSYTCCNL 175


>tr|B6IP01|B6IP01_RHOCS Putative uncharacterized protein
           OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
           GN=RC1_2028 PE=4 SV=1
          Length = 248

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 356 CF--VIGSCFGWLSLYLCHGSKYEDLFLMYELFELHLSNGRFFVCPALVQAFEPTLILRW 529
           CF  V+G  F  L++Y CHG+      L+YE+ +    +   +VCPA   A  P    + 
Sbjct: 91  CFPRVLGYAFNPLTIYFCHGADGRLAALLYEV-KNTFGDQHVYVCPADGDASGPVTHAQA 149

Query: 530 KEF 538
           KEF
Sbjct: 150 KEF 152


>tr|B3RXR4|B3RXR4_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_56301 PE=4 SV=1
          Length = 902

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 350 EKCFVIGSCFGWLSLYLCHGSKYE---DLFLMYELFELHLSNGRFFV 481
           + C  IGS  GWL +Y C+ S Y+    L L   +  LH +  R FV
Sbjct: 585 QPCMWIGSESGWLYIYECNSSHYQLLHSLSLKDSILSLHYNQDRVFV 631


>tr|Q4DLQ5|Q4DLQ5_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053511859.70 PE=4 SV=1
          Length = 259

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
 Frame = -3

Query: 416 TCCHDTNIMITTRNKNLLQSIFLPFLA---CHIGYNKYMEITCLVLHSARVLNHEEQHN- 249
           TC H T++   T  ++L+  ++L  LA   CH+   +++          R+   E+  + 
Sbjct: 88  TCEHATSV--PTGQQDLVGHVYLYVLARRDCHVDLLRFL---------CRLFADEDFTSV 136

Query: 248 -QCS*PQPARSPSTTLRSPPAALNEQNNA*KSSCCHVLAT*ACRATPLNAITFHNLLCSR 72
            +C   +  R  +TT     A  NE+ N  KS   H+     C AT + A     LL  R
Sbjct: 137 LKCIREKATREEATTA----AVKNERENEEKSEGSHISCPVFCNATAVAAKQVVQLLFPR 192

Query: 71  LLARTAPA 48
           +LA+  P+
Sbjct: 193 MLAQDVPS 200


>tr|B8P5Z3|B8P5Z3_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_95687 PE=4 SV=1
          Length = 785

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = -2

Query: 366 ITKHFSALSGLSYRLQ*VHGNYMSRAPFSTCTEPRRATQSVLITSACTIAFNDLEKPACG 187
           I++H S L     + Q ++  Y++R+P ST  EP   TQSV      +++FN     A G
Sbjct: 383 ISQHVSTLRQRDQQQQALYQQYLNRSP-STPPEPSYGTQSVAAVLGGSMSFNSSMNSASG 441

Query: 186 IKRAEQR 166
           +     R
Sbjct: 442 LNVGSSR 448