NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953581
Clone id TST39A01NGRL0018_C12
Library
Length 363
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_C12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATTGCCCCTGGAGACTTCTCTATCGAGAGCAAGGAGGGTTTACCTTCTTACACACCACCT
GGTTCTTATAGGCTTGACATGCGTATCCATAACCTTGATGGAGACATGCTGACTTGTTTG
AAGATCAACTTCAGGATTACGGCACCCGACACCTTCCTGGGATTCTGAACGGAGCGTTAG
AAAATTTATGGAGTTGGCTTTTACTTGGGTTGTATATACTTTAACTGGTATATTTATACA
GGATGATACCCTCAAATGTAACTTTCATTGAGGTTCTTCATACATGATGTCTAGTGCATA
ATGCTGTTCTGTTTAGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
■■Homology search results ■■ -
sp_hit_id O94183
Definition sp|O94183|NPC2_ASPOR Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Aspergillus oryzae
Align length 50
Score (bit) 42.7
E-value 0.0006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953581|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_C12, 5'
         (319 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O94183|NPC2_ASPOR Phosphatidylglycerol/phosphatidylinositol t...    43   6e-04
sp|Q4X136|NPC2_ASPFU Phosphatidylglycerol/phosphatidylinositol t...    36   0.052
sp|Q6CHU5|NPC2_YARLI Phosphatidylglycerol/phosphatidylinositol t...    35   0.088
sp|Q12408|NPC2_YEAST Phosphatidylglycerol/phosphatidylinositol t...    34   0.20 
sp|Q6CNE0|NPC2_KLULA Phosphatidylglycerol/phosphatidylinositol t...    34   0.20 
sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus ...    34   0.20 
sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo...    34   0.20 
sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus m...    34   0.20 
sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macac...    34   0.20 
sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo ...    34   0.20 
sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos t...    34   0.20 
sp|Q4P580|NPC2_USTMA Phosphatidylglycerol/phosphatidylinositol t...    33   0.33 
sp|Q9C0X9|NPC2_SCHPO Phosphatidylglycerol/phosphatidylinositol t...    33   0.44 
sp|Q7RZ85|NPC2_NEUCR Phosphatidylglycerol/phosphatidylinositol t...    33   0.44 
sp|Q6BV42|NPC2_DEBHA Phosphatidylglycerol/phosphatidylinositol t...    33   0.57 
sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallu...    32   0.75 
sp|Q756Q3|NPC2_ASHGO Phosphatidylglycerol/phosphatidylinositol t...    32   0.97 
sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenop...    32   0.97 
sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenop...    32   1.3  
sp|Q6FNB1|NPC2_CANGA Phosphatidylglycerol/phosphatidylinositol t...    30   2.8  
sp|Q91756|GLRK_XENLA Glutamate receptor U1 OS=Xenopus laevis GN=...    30   4.8  
sp|Q5A8A2|NPC2_CANAL Phosphatidylglycerol/phosphatidylinositol t...    29   8.2  

>sp|O94183|NPC2_ASPOR Phosphatidylglycerol/phosphatidylinositol
           transfer protein OS=Aspergillus oryzae GN=pltp PE=1 SV=1
          Length = 175

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLK-INFRITAP 147
           + PGD ++  +  LP   PPG Y +   + N DG+ +TCLK +N     P
Sbjct: 125 LGPGDMTLTKQVDLPKQIPPGKYTVQADVFNSDGEHITCLKALNIEFKGP 174


>sp|Q4X136|NPC2_ASPFU Phosphatidylglycerol/phosphatidylinositol
           transfer protein OS=Aspergillus fumigatus GN=npc2 PE=3
           SV=2
          Length = 175

 Score = 36.2 bits (82), Expect = 0.052
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 10  GDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCL---KINFRI 138
           G+ ++  +  LPS+ PPG Y +   ++  DG  +TCL    I F+I
Sbjct: 128 GEMTLTKQVDLPSHIPPGKYNVHADVYTKDGKKITCLDAHDIEFKI 173


>sp|Q6CHU5|NPC2_YARLI Phosphatidylglycerol/phosphatidylinositol
           transfer protein OS=Yarrowia lipolytica GN=NPC2 PE=3
           SV=1
          Length = 189

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCL 120
           I  GD  +  +  LP+  PPG Y    R + +D D++TCL
Sbjct: 140 IKAGDLKLNKQIELPNEIPPGKYVAVARAYTVDDDLITCL 179


>sp|Q12408|NPC2_YEAST Phosphatidylglycerol/phosphatidylinositol
           transfer protein OS=Saccharomyces cerevisiae GN=NPC2
           PE=1 SV=1
          Length = 173

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCL 120
           I PG+++I+    +P   PPG Y +  R +    D++TCL
Sbjct: 125 IEPGEYNIKKIVEIPGEVPPGKYVVVARAYTEKDDLITCL 164


>sp|Q6CNE0|NPC2_KLULA Phosphatidylglycerol/phosphatidylinositol
           transfer protein OS=Kluyveromyces lactis GN=NPC2 PE=3
           SV=1
          Length = 173

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCL 120
           I  G + +     +PS  PPG Y +  R +N+D + +TCL
Sbjct: 125 IEEGVYELNKIVEIPSEVPPGKYSVIARAYNVDDEQITCL 164


>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus
           norvegicus GN=Cops3 PE=2 SV=1
          Length = 423

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 19  SIESKEGLPSYTP-PGSYRLDMRIHNLDGDMLTCLKINFRITAPD 150
           SI  K+G+ S+   P  Y     +HN+D +ML C++++ R+ A D
Sbjct: 350 SINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMD 394


>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo
           abelii GN=COPS3 PE=2 SV=1
          Length = 423

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 19  SIESKEGLPSYTP-PGSYRLDMRIHNLDGDMLTCLKINFRITAPD 150
           SI  K+G+ S+   P  Y     +HN+D +ML C++++ R+ A D
Sbjct: 350 SINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMD 394


>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus
           musculus GN=Cops3 PE=1 SV=3
          Length = 423

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 19  SIESKEGLPSYTP-PGSYRLDMRIHNLDGDMLTCLKINFRITAPD 150
           SI  K+G+ S+   P  Y     +HN+D +ML C++++ R+ A D
Sbjct: 350 SINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMD 394


>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca
           fascicularis GN=COPS3 PE=2 SV=1
          Length = 423

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 19  SIESKEGLPSYTP-PGSYRLDMRIHNLDGDMLTCLKINFRITAPD 150
           SI  K+G+ S+   P  Y     +HN+D +ML C++++ R+ A D
Sbjct: 350 SINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMD 394


>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo
           sapiens GN=COPS3 PE=1 SV=3
          Length = 423

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 19  SIESKEGLPSYTP-PGSYRLDMRIHNLDGDMLTCLKINFRITAPD 150
           SI  K+G+ S+   P  Y     +HN+D +ML C++++ R+ A D
Sbjct: 350 SINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMD 394
tr_hit_id Q9LXQ2
Definition tr|Q9LXQ2|Q9LXQ2_ARATH Putative uncharacterized protein F26G5_50 OS=Arabidopsis thaliana
Align length 47
Score (bit) 52.4
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953581|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_C12, 5'
         (319 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LXQ2|Q9LXQ2_ARATH Putative uncharacterized protein F26G5_50...    52   1e-05
tr|A9NRH8|A9NRH8_PICSI Putative uncharacterized protein OS=Picea...    49   2e-04
tr|A9NR20|A9NR20_PICSI Putative uncharacterized protein OS=Picea...    49   2e-04
tr|A9SUI4|A9SUI4_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   5e-04
tr|A9PA31|A9PA31_POPTR Putative uncharacterized protein OS=Popul...    47   6e-04
tr|Q9FG22|Q9FG22_ARATH Similarity to unknown protein (At5g06480)...    45   0.001
tr|Q8L9R3|Q8L9R3_ARATH Putative uncharacterized protein OS=Arabi...    45   0.001
tr|Q67YH2|Q67YH2_ARATH Putative uncharacterized protein At5g0648...    45   0.001
tr|A7QF45|A7QF45_VITVI Chromosome undetermined scaffold_87, whol...    45   0.001
tr|A5ALT4|A5ALT4_VITVI Putative uncharacterized protein OS=Vitis...    45   0.001
tr|Q9SF20|Q9SF20_ARATH F26K24.7 protein (Putative uncharacterize...    45   0.002
tr|Q8LCT1|Q8LCT1_ARATH Putative uncharacterized protein OS=Arabi...    45   0.002
tr|Q8H559|Q8H559_ORYSJ Os07g0159800 protein OS=Oryza sativa subs...    45   0.002
tr|B6UF85|B6UF85_MAIZE ML domain protein OS=Zea mays PE=2 SV=1         45   0.002
tr|A2YIC9|A2YIC9_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|B4FVA1|B4FVA1_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.002
tr|B6U9L4|B6U9L4_MAIZE ML domain protein OS=Zea mays PE=2 SV=1         44   0.004
tr|B6TM82|B6TM82_MAIZE ML domain protein OS=Zea mays PE=2 SV=1         43   0.007
tr|B4FEI9|B4FEI9_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.007
tr|Q5W1I1|Q5W1I1_NICGL Putative ML domain protein (Fragment) OS=...    43   0.009
tr|A7Q077|A7Q077_VITVI Chromosome chr8 scaffold_41, whole genome...    43   0.009
tr|A5AFH3|A5AFH3_VITVI Putative uncharacterized protein OS=Vitis...    43   0.009
tr|B8NG78|B8NG78_ASPFL ML domain protein, putative OS=Aspergillu...    43   0.009
tr|A9SE56|A9SE56_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A3ANF4|A3ANF4_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.015
tr|Q6F3C5|Q6F3C5_ORYSJ Os03g0788200 protein OS=Oryza sativa subs...    42   0.020
tr|A2XMQ2|A2XMQ2_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.020
tr|A1DH49|A1DH49_NEOFI ML domain protein OS=Neosartorya fischeri...    37   0.64 
tr|B0XSG4|B0XSG4_ASPFC ML domain protein, putative OS=Aspergillu...    36   0.84 
tr|A1C6H7|A1C6H7_ASPCL ML domain protein, putative OS=Aspergillu...    35   1.4  

>tr|Q9LXQ2|Q9LXQ2_ARATH Putative uncharacterized protein F26G5_50
           OS=Arabidopsis thaliana GN=F26G5_50 PE=2 SV=1
          Length = 152

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 22/47 (46%), Positives = 31/47 (65%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRIT 141
           +APG F +   + LPS TPPG+Y L M I++ +G  LTC+   F+IT
Sbjct: 98  VAPGSFVLSHSQTLPSITPPGTYTLKMTINDKNGGRLTCISFKFKIT 144


>tr|A9NRH8|A9NRH8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 156

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRI 138
           I  G F +   + LP +TP GSY+L M++ ++D   LTC+ INF+I
Sbjct: 102 IEKGSFVLTHSQSLPGFTPSGSYKLKMKLIDVDDKQLTCVNINFKI 147


>tr|A9NR20|A9NR20_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 156

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRI 138
           I  G F +   + LP +TP GSY+L M++ ++D   LTC+ INF+I
Sbjct: 102 IEKGSFVLTHSQSLPGFTPAGSYKLKMKLIDVDDKQLTCVNINFKI 147


>tr|A9SUI4|A9SUI4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_135516 PE=4 SV=1
          Length = 146

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRITAPDT 153
           I PG+F +E+ E LP +TPPGSY++ ++  +     L C  INF I    T
Sbjct: 69  IPPGEFVLENTEILPGFTPPGSYKIKLQFVDESDKQLACADINFSIVWSQT 119


>tr|A9PA31|A9PA31_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 152

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRI 138
           +  G+F +   E LP +TPPGSY L M++ N +   LTC+   FRI
Sbjct: 98  VTSGNFVVSHTEELPGFTPPGSYSLTMKMINGESRELTCISFGFRI 143


>tr|Q9FG22|Q9FG22_ARATH Similarity to unknown protein (At5g06480)
           OS=Arabidopsis thaliana GN=At5g06480 PE=2 SV=1
          Length = 153

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRI 138
           I  GDF +   + LP YTPPGSY L M++ +     LTC+K +F I
Sbjct: 99  IQTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAKKKELTCIKFSFDI 144


>tr|Q8L9R3|Q8L9R3_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 153

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRI 138
           I  GDF +   + LP YTPPGSY L M++ +     LTC+K +F I
Sbjct: 99  IQTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAKKKELTCIKFSFDI 144


>tr|Q67YH2|Q67YH2_ARATH Putative uncharacterized protein At5g06480
           (Fragment) OS=Arabidopsis thaliana GN=At5g06480 PE=2
           SV=1
          Length = 91

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRI 138
           I  GDF +   + LP YTPPGSY L M++ +     LTC+K +F I
Sbjct: 37  IQTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAKKKELTCIKFSFDI 82


>tr|A7QF45|A7QF45_VITVI Chromosome undetermined scaffold_87, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037271001 PE=4 SV=1
          Length = 154

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRI 138
           I+ G+F +   + LP +TPPGSY L M++ +     LTC+  NF I
Sbjct: 100 ISGGNFELSHSQMLPGFTPPGSYTLKMKMEDESKHQLTCITFNFNI 145


>tr|A5ALT4|A5ALT4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030670 PE=4 SV=1
          Length = 154

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   IAPGDFSIESKEGLPSYTPPGSYRLDMRIHNLDGDMLTCLKINFRI 138
           I+ G+F +   + LP +TPPGSY L M++ +     LTC+  NF I
Sbjct: 100 ISGGNFELSHSQMLPGFTPPGSYTLKMKMEDESKHQLTCITFNFNI 145