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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953585
Clone id TST39A01NGRL0018_C16
Library
Length 479
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_C16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTTTCTGTTGCTTGCAAGAGAAGAGAATCTCTAAAAGCAGGCTTTTAAATTTTCTACTT
CTTCTGTGCATCTTCAGTTTTTATTTTTCCTTCTAGCTTTGTGTAATTAGGGGTGATTAG
TGCCTAATTATCCATCAACAGCAAGCTTAACCACCCACCAACAAGCTTAATTACGAGAAG
ATGGTTAATGACAGGACCCCGCTGCTGCCCCAAACCCAACAGGCAAGTGCTGGTAACTTT
CCTTCAAGCAATGAAACAGGGAGGACCTCAAGCAGAAAAGGTGCGGTTTTGGTAGCAGTT
TGCGTGTTCCTCGGGCTTTTGGGCCTTTGGAGGTTGTCCTCCACAAACCCAGAAGACACA
AAAACCATGCAGACTCTGTTGTCGGCAGCAGACCGGCCGCTGAGAGCCAACGAAGGCCTC
AATTATCTGGTGGTAGGCGAATTGGGGAAGAGAGGGATTCTACTACCAGTCCCTGCTCG
■■Homology search results ■■ -
sp_hit_id Q80VY2
Definition sp|Q80VY2|CA183_MOUSE Uncharacterized protein C1orf183 homolog OS=Mus musculus
Align length 73
Score (bit) 32.7
E-value 0.87
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953585|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_C16, 5'
         (479 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80VY2|CA183_MOUSE Uncharacterized protein C1orf183 homolog O...    33   0.87 
sp|Q5ND04|HSF5_MOUSE Heat shock factor protein 5 OS=Mus musculus...    32   1.9  
sp|Q5RAB7|S39AE_PONAB Zinc transporter ZIP14 OS=Pongo abelii GN=...    31   3.3  
sp|Q15043|S39AE_HUMAN Zinc transporter ZIP14 OS=Homo sapiens GN=...    31   3.3  
sp|P58812|APGM_METAC 2,3-bisphosphoglycerate-independent phospho...    30   4.3  
sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabi...    30   5.6  
sp|Q14155|ARHG7_HUMAN Rho guanine nucleotide exchange factor 7 O...    30   5.6  
sp|Q87YG5|PLSX_PSESM Fatty acid/phospholipid synthesis protein p...    30   7.4  
sp|O65457|PEL17_ARATH Putative pectate lyase 17 OS=Arabidopsis t...    30   7.4  
sp|Q2KHV9|K2013_BOVIN Uncharacterized protein KIAA2013 homolog O...    30   7.4  
sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens GN=SHROOM3...    29   9.6  
sp|O46669|SCNAA_CANFA Sodium channel protein type 10 subunit alp...    29   9.6  
sp|A4IZK6|GCSPA_FRATW Probable glycine dehydrogenase [decarboxyl...    29   9.6  
sp|Q5NHN8|GCSPA_FRATT Probable glycine dehydrogenase [decarboxyl...    29   9.6  
sp|Q0BN71|GCSPA_FRATO Probable glycine dehydrogenase [decarboxyl...    29   9.6  
sp|A0Q587|GCSPA_FRATN Probable glycine dehydrogenase [decarboxyl...    29   9.6  
sp|Q2A4V1|GCSPA_FRATH Probable glycine dehydrogenase [decarboxyl...    29   9.6  
sp|A7NAH8|GCSPA_FRATF Probable glycine dehydrogenase [decarboxyl...    29   9.6  
sp|Q14J40|GCSPA_FRAT1 Probable glycine dehydrogenase [decarboxyl...    29   9.6  
sp|Q8PX04|APGM_METMA 2,3-bisphosphoglycerate-independent phospho...    29   9.6  
sp|Q46E58|APGM_METBF 2,3-bisphosphoglycerate-independent phospho...    29   9.6  

>sp|Q80VY2|CA183_MOUSE Uncharacterized protein C1orf183 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 300

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -3

Query: 348 VCGGQP---PKAQKPEEHANCYQNRTFSA*GPPCFIA*RKVTSTCLLGLGQQRGP-VINH 181
           VCG +    PK Q PEEH +C Q  T        ++     TST L+  G+ R P V+  
Sbjct: 111 VCGKELAVLPKTQLPEEHQSCTQQGTE-------WVEPDDWTST-LMSRGRNRQPLVLGD 162

Query: 180 LLVIKLVGGWLSL 142
            +   LVG WL L
Sbjct: 163 NVFADLVGNWLDL 175


>sp|Q5ND04|HSF5_MOUSE Heat shock factor protein 5 OS=Mus musculus
           GN=Hsf5 PE=2 SV=1
          Length = 624

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 190 DRTPLLPQTQQASAGNFPSSNETGRTSSRKG 282
           DRTP+ P+T Q S G  P   ET  T S KG
Sbjct: 250 DRTPIPPRTWQNSLGMHPGQVETSPTFSDKG 280


>sp|Q5RAB7|S39AE_PONAB Zinc transporter ZIP14 OS=Pongo abelii
           GN=SLC39A14 PE=2 SV=2
          Length = 490

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
 Frame = -2

Query: 391 LLPTTESAWFLCLLGLWRTTSKGPKARGTRKLLPKPHLFCLRSSLFH-----------CL 245
           L P  +S   L LLGLWRTT   P+A  +    P          L H            L
Sbjct: 4   LHPAFQSCLLLTLLGLWRTT---PEAHASSPGAPAISAASFLQDLIHRYGEGDSLTLQQL 60

Query: 244 KESYQHLPVGFGAAAGSCH*PSSRN 170
           K    HL VG G    + H    RN
Sbjct: 61  KALLNHLDVGVGRGNVTQHVQGHRN 85


>sp|Q15043|S39AE_HUMAN Zinc transporter ZIP14 OS=Homo sapiens
           GN=SLC39A14 PE=1 SV=2
          Length = 492

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
 Frame = -2

Query: 391 LLPTTESAWFLCLLGLWRTTSKGPKARGTRKLLPKPHLFCLRSSLFH-----------CL 245
           L P  +S   L LLGLWRTT   P+A  +    P          L H            L
Sbjct: 6   LHPAFQSCLLLTLLGLWRTT---PEAHASSPGAPAISAASFLQDLIHRYGEGDSLTLQQL 62

Query: 244 KESYQHLPVGFGAAAGSCH*PSSRN 170
           K    HL VG G    + H    RN
Sbjct: 63  KALLNHLDVGVGRGNVTQHVQGHRN 87


>sp|P58812|APGM_METAC 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Methanosarcina acetivorans
           GN=apgM PE=3 SV=1
          Length = 397

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 341 EDNLQRPKSPRNTQTATKTAPFLLEVLPVSLL---EGKLPALACWVWG 207
           +D L R K         + +  +LE+ PV+L    EGK PA + WVWG
Sbjct: 171 DDYLPRGKDGEFFSGLIEASTVVLELHPVNLKRVQEGKNPANSIWVWG 218


>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3
           OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2
          Length = 429

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 280 GAVLVAVCVFLGLLGLWRLSSTNPEDTKTMQTLLSAADRPLRANEGLNYLVVGEL 444
           GAV     V   + GL    S +PED   +  LL  A   LRA  G+N+  + +L
Sbjct: 3   GAVNSVEAVITSIQGL----SGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQL 53


>sp|Q14155|ARHG7_HUMAN Rho guanine nucleotide exchange factor 7
           OS=Homo sapiens GN=ARHGEF7 PE=1 SV=2
          Length = 803

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +1

Query: 172 YEKMVNDRTPLLPQT--QQASAGNFPSSNETGRTSSR-KGAVLVAVCVFLGLLGLWRLSS 342
           +E  +N RT   P    ++  A   P S ++G   S  KG    A+      + L  +  
Sbjct: 222 WEGTLNGRTGWFPSNYVREVKASEKPVSPKSGTLKSPPKGFDTTAINKSYYNVVLQNILE 281

Query: 343 TNPEDTKTMQTLLSAADRPLRANEGLN 423
           T  E +K +QT+LS   RPL+ +E L+
Sbjct: 282 TENEYSKELQTVLSTYLRPLQTSEKLS 308


>sp|Q87YG5|PLSX_PSESM Fatty acid/phospholipid synthesis protein plsX
           OS=Pseudomonas syringae pv. tomato GN=plsX PE=3 SV=2
          Length = 340

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 419 RPSLALSGRSAADNRVCMVFVSSGFVEDNLQRPKSPRNTQTATKTAPFLLEVLP 258
           RPS AL G+S +  RV +  VSSG      Q   S  NT      + ++L+ LP
Sbjct: 74  RPSQALRGKSDSSMRVALELVSSG----QAQACVSAGNTGALMALSRYVLKTLP 123


>sp|O65457|PEL17_ARATH Putative pectate lyase 17 OS=Arabidopsis
           thaliana GN=At4g22090 PE=3 SV=1
          Length = 394

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 21/45 (46%), Positives = 21/45 (46%), Gaps = 11/45 (24%)
 Frame = +3

Query: 198 PAAAP----------NPTGKCW*L-SFKQ*NREDLKQKRCGFGSS 299
           PAAAP          NP   CW L S    NREDL     GFGSS
Sbjct: 32  PAAAPYPAEEPQNIMNPVDSCWRLKSDWDVNREDLADCAVGFGSS 76


>sp|Q2KHV9|K2013_BOVIN Uncharacterized protein KIAA2013 homolog
           OS=Bos taurus PE=2 SV=1
          Length = 634

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -2

Query: 394 GLLPTTESAWFLCLLGL-----WRTTSKGPKARGTRKLLPKPH 281
           GLL ++ +   LCLLGL     W   S   +A G  +LLP PH
Sbjct: 12  GLLSSSWARRLLCLLGLLVLLLWFAGSGARRAAGGLQLLPWPH 54
tr_hit_id Q0AB44
Definition tr|Q0AB44|Q0AB44_ALHEH DNA repair protein radA OS=Alkalilimnicola ehrlichei (strain MLHE-1)
Align length 65
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953585|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_C16, 5'
         (479 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0AB44|Q0AB44_ALHEH DNA repair protein radA OS=Alkalilimnicol...    37   0.49 
tr|Q2M122|Q2M122_DROPS GA14267 OS=Drosophila pseudoobscura pseud...    36   1.1  
tr|B4GUS3|B4GUS3_DROPE GL24187 OS=Drosophila persimilis GN=GL241...    35   2.4  
tr|B6FV36|B6FV36_9CLOT Putative uncharacterized protein OS=Clost...    34   4.1  
tr|A2QWC1|A2QWC1_ASPNC Contig An11c0170, complete genome OS=Aspe...    33   5.4  
tr|B3W896|B3W896_LACCB Beta-fructosidase OS=Lactobacillus casei ...    33   7.0  
tr|A1W3H7|A1W3H7_ACISJ TonB-dependent receptor, plug OS=Acidovor...    33   7.0  
tr|A0LRE2|A0LRE2_ACIC1 DNA repair protein radA OS=Acidothermus c...    33   7.0  
tr|A6V2B9|A6V2B9_PSEA7 Probable MFS transporter OS=Pseudomonas a...    33   9.2  

>tr|Q0AB44|Q0AB44_ALHEH DNA repair protein radA OS=Alkalilimnicola
           ehrlichei (strain MLHE-1) GN=Mlg_0589 PE=3 SV=1
          Length = 451

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +1

Query: 280 GAVLVAVCVFLGLLGLWRLSSTNPEDTKTMQTLLSAADRPLRANEGLNYLVVGELGKRGI 459
           G  L  + VFL ++G  R+S T  +    +  L S  DRPL     L+ +V GELG  G 
Sbjct: 343 GVALHGLDVFLNVVGGVRVSETASDLPAVLAVLSSLRDRPL----PLDTVVFGELGLSGE 398

Query: 460 LLPVP 474
           + PVP
Sbjct: 399 IRPVP 403


>tr|Q2M122|Q2M122_DROPS GA14267 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA14267 PE=3 SV=2
          Length = 255

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 131 SINSKLNHP-PTSLITRRWLMTGPRCCPKPNRQVLVTFLQAMKQGGPQAEKVR 286
           S++ + NH   ++LIT RWL+T   C P P R  +     ++++GG Q   VR
Sbjct: 45  SLSVQGNHSCGSALITPRWLVTAAHCVPYPERYSVRAGSSSVREGGQQRAVVR 97


>tr|B4GUS3|B4GUS3_DROPE GL24187 OS=Drosophila persimilis GN=GL24187
           PE=4 SV=1
          Length = 255

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 131 SINSKLNHP-PTSLITRRWLMTGPRCCPKPNRQVLVTFLQAMKQGGPQAEKVR 286
           S++ + NH   ++LIT RWL+T   C P P R  +     ++++GG Q   V+
Sbjct: 45  SLSVQGNHSCGSALITPRWLVTAAHCVPYPERYSVRAGSSSVREGGQQRAVVK 97


>tr|B6FV36|B6FV36_9CLOT Putative uncharacterized protein
           OS=Clostridium nexile DSM 1787 GN=CLONEX_04024 PE=4 SV=1
          Length = 875

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 303 RVPRAFGPLEVVLHKPRRHKNHADSVVGSRPAAESQRRPQLSGGRRIGE 449
           ++P     LEV L  P++      SV G+RPA + +R+P++S    I E
Sbjct: 264 KIPEVQETLEVYLESPQKEA----SVAGNRPAEQKERKPRISNEELISE 308


>tr|A2QWC1|A2QWC1_ASPNC Contig An11c0170, complete genome
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An11g04630 PE=4 SV=1
          Length = 1473

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -1

Query: 476 AGTGSRIPLFPNSPTTR*LRPSLALSGRSAADNRVCMVFVSSGFVEDNL-QRPKSPRNTQ 300
           A  G++  + P  P    L  +  +S  +  +N + ++  +S  VED++ Q P SP    
Sbjct: 238 APDGAQKGIIPRPPD---LEDNHHVSSIAWLENDIFLMVYTSNAVEDDMGQTPSSPYYII 294

Query: 299 TATKTAPFLLEVLP 258
           T  K APFL++ LP
Sbjct: 295 TRRKNAPFLIQKLP 308


>tr|B3W896|B3W896_LACCB Beta-fructosidase OS=Lactobacillus casei
           (strain BL23) GN=fosE PE=4 SV=1
          Length = 493

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +1

Query: 154 PTNKLNYEKMVNDRTPLLP--QTQQASAGNFPSSNETGRTSSRKG-------AVLVAVCV 306
           PTN  N     N   P +P   TQ   +GN  S     RT  R+G        ++VA+  
Sbjct: 422 PTNPTNPTNPTNPTNPTIPTDSTQTVISGN--SGTRLPRTGEREGIEASLWGGLIVAIST 479

Query: 307 FLGLLGLWRLSSTN 348
            LG+LG+ R    N
Sbjct: 480 LLGILGIDRKRKQN 493


>tr|A1W3H7|A1W3H7_ACISJ TonB-dependent receptor, plug OS=Acidovorax
           sp. (strain JS42) GN=Ajs_0552 PE=3 SV=1
          Length = 653

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 415 LRWLSAAGLLPTTESAWFLCLLGLWR 338
           +R+LS+ GLLP   +AW L  LG WR
Sbjct: 449 IRYLSSGGLLPERVNAWDLVYLGQWR 474


>tr|A0LRE2|A0LRE2_ACIC1 DNA repair protein radA OS=Acidothermus
           cellulolyticus (strain ATCC 43068 / 11B) GN=Acel_0228
           PE=3 SV=1
          Length = 460

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +1

Query: 274 RKGAVLVAVCVFLGLLGLWRLSSTNPEDTKTMQTLLSAADRPLRANEGLNYLVVGELGKR 453
           R G VL    VF+  +G  R+     +    +    +AADRPL        L VGE+G  
Sbjct: 337 RAGVVLAGQDVFVATVGGARIREPAGDLALVLAVASAAADRPLPP----GLLAVGEVGLA 392

Query: 454 GILLPVP 474
           G + PVP
Sbjct: 393 GEIRPVP 399


>tr|A6V2B9|A6V2B9_PSEA7 Probable MFS transporter OS=Pseudomonas
           aeruginosa (strain PA7) GN=PSPA7_1820 PE=4 SV=1
          Length = 391

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
 Frame = -2

Query: 415 LRWLSAA------GLLPTTESAWFLCLLGLWRTTSKGPKARGTRKLLPKPHLFCLRS--- 263
           L+W+ AA       L P+  SAWF+ +L +W   S          + P    F LRS   
Sbjct: 269 LQWVPAAFAVALAALPPSLGSAWFVPVLMVWSAISW--------MISPVVQSFLLRSDPA 320

Query: 262 --SLFHCLKESYQHLPVGFGAAAG 197
             S    L  S  HL VG GAA G
Sbjct: 321 SGSAGVALNTSAMHLGVGLGAALG 344