DK953586 |
Clone id |
TST39A01NGRL0018_C17 |
Library |
TST39 |
Length |
612 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_C17. 5' end sequence. |
Accession |
DK953586 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL237Contig1 |
Sequence |
CTTTCGTCTTGGCGCGACTGTACAGAGAAATTTGCTTGTATCTGCATTTCCTCTCCTCGT GGAAGGACCTCCCGATTGTTATCGCAGGTGATAGTTTGCGGGCCGCAGTTGAGTTTCGTG TATCAAGGGTAGTATGAATGCGAAATTCAACAATCGCTCGTCAATCGAACCTGTGGATGA AGAAACCTGCGTATCTCCACTCGAACCTAAACTGCATTGAAAATTTTGATTTGCCAGCAG GTCGTCTGCTGGTCCTTGTAAGCTTTTGAAGATTTCATGTTCACATTCAGCCATGGAGAT GAAAGACAGACATTCTTCTTTTTTAGCAATGGAGAAGTCATCATCTTTGCTGGAGGCCAT GGTGGATTTGTCTGCCAATATGGTGCCTTTGTGGGTAGCTGTACTGATCGGCCTTTTTGT AGGATGGATATGGAAGCCACGGTGGGTGAGCTTACTGTTTCTAGGGGTAAGAGGCAGGCA CAGACTCGTCTGGACTAGTCCTCCAGGCCTAGGTGTGCGGCGCTTCTGGATTGCATTGAC TGCTTCAGTGACCGCCTTTCAAATGCTGAAAGAATGCTGGTTGAAATTTAAAGCATGGAA ATGGCCTCAGAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q04003 |
Definition |
sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Saccharomyces cerevisiae |
Align length |
82 |
Score (bit) |
33.9 |
E-value |
0.68 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953586|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0018_C17, 5' (612 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Sacc... 34 0.68 sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04... 32 2.0 sp|Q83Z42|OPGH_XANEU Glucans biosynthesis glucosyltransferase H ... 31 4.4 sp|Q3BXV7|OPGH_XANC5 Glucans biosynthesis glucosyltransferase H ... 31 4.4 sp|Q8PPR7|OPGH_XANAC Glucans biosynthesis glucosyltransferase H ... 31 4.4 sp|O18175|SRE33_CAEEL Serpentine receptor class epsilon-33 OS=Ca... 31 5.7 sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Sola... 30 7.5 sp|O54935|XRCC1_CRIGR DNA repair protein XRCC1 OS=Cricetulus gri... 30 7.5 sp|O02056|RL4_CAEEL 60S ribosomal protein L4 OS=Caenorhabditis e... 30 9.7 sp|Q9D3R3|CEP72_MOUSE Centrosomal protein of 72 kDa OS=Mus muscu... 30 9.8
>sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Saccharomyces cerevisiae GN=SAS4 PE=1 SV=1 Length = 481
Score = 33.9 bits (76), Expect = 0.68 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Frame = -1
Query: 456 SKLTHRGFHIHPTKRPISTATHKGTILADKSTMASS--KDDDFSIAKKEECLSFISMAEC 283 S++ H+ +K + H K M S + D I KK E ++ +++ Sbjct: 51 SRINPNAGHLRKSKSCFTVDEHVDETRCQKPVMKSPFMSNVDDEIKKKRETITKMTLEIE 110
Query: 282 EHEIFKSLQGPADDLLANQNFQ 217 HE+ ++++ P DDLL + +Q Sbjct: 111 HHELSQNIRKPTDDLLPDSTYQ 132
>sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe GN=SPBC902.04 PE=1 SV=1 Length = 589
Score = 32.3 bits (72), Expect = 2.0 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -1
Query: 441 RGFHIHPTKRPISTATHKGTILADKSTMASSKD-DDFSIAKKEECLSFISMAECEHE 274 +GFH RP A+HK +D S + SS+D D S+ + EE I + +HE Sbjct: 316 KGFH----NRPKKFASHKSPTTSDSSNVESSEDVDPASLLQNEEFHKLIEERQRQHE 368
>sp|Q83Z42|OPGH_XANEU Glucans biosynthesis glucosyltransferase H OS=Xanthomonas euvesicatoria GN=opgH PE=3 SV=1 Length = 643
Score = 31.2 bits (69), Expect = 4.4 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%) Frame = +2
Query: 494 TSPPGLGVRRFWIA----LTASVTAFQMLKECW 580 TSPPG+GVRRF++ T ++ + ML W Sbjct: 52 TSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLW 84
>sp|Q3BXV7|OPGH_XANC5 Glucans biosynthesis glucosyltransferase H OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=opgH PE=3 SV=1 Length = 645
Score = 31.2 bits (69), Expect = 4.4 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%) Frame = +2
Query: 494 TSPPGLGVRRFWIA----LTASVTAFQMLKECW 580 TSPPG+GVRRF++ T ++ + ML W Sbjct: 52 TSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLW 84
>sp|Q8PPR7|OPGH_XANAC Glucans biosynthesis glucosyltransferase H OS=Xanthomonas axonopodis pv. citri GN=opgH PE=3 SV=2 Length = 645
Score = 31.2 bits (69), Expect = 4.4 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%) Frame = +2
Query: 494 TSPPGLGVRRFWIA----LTASVTAFQMLKECW 580 TSPPG+GVRRF++ T ++ + ML W Sbjct: 52 TSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLW 84
>sp|O18175|SRE33_CAEEL Serpentine receptor class epsilon-33 OS=Caenorhabditis elegans GN=sre-33 PE=2 SV=2 Length = 359
Score = 30.8 bits (68), Expect = 5.7 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = +2
Query: 368 LSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLGVRRFWIALTAS 547 L+ M +W ++IG F+ ++ + + L F G H +WT+ PG + L AS Sbjct: 66 LALPMFGMWYELIIGKFITIAYRLKLLGLDF--ELGEHTAIWTNDPGK------VLLVAS 117
Query: 548 VTAFQML 568 + ++L Sbjct: 118 LNGLELL 124
>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1 Length = 1207
Score = 30.4 bits (67), Expect = 7.5 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%) Frame = +2
Query: 242 SSAGPCKLLKISCSHSAMEMKDRHSSFLAMEKS--------SSLLEAMVDLSANM 382 SS GPC +SC +S + D ++FL+++ S S LE++V +AN+ Sbjct: 66 SSTGPCSFTGVSCKNSRVSSIDLSNTFLSVDFSLVTSYLLPLSNLESLVLKNANL 120
>sp|O54935|XRCC1_CRIGR DNA repair protein XRCC1 OS=Cricetulus griseus GN=XRCC1 PE=2 SV=1 Length = 633
Score = 30.4 bits (67), Expect = 7.5 Identities = 25/90 (27%), Positives = 37/90 (41%) Frame = -1
Query: 435 FHIHPTKRPISTATHKGTILADKSTMASSKDDDFSIAKKEECLSFISMAECEHEIFKSLQ 256 FH P K T + KGT+ ++DD + + K L F + + S + Sbjct: 153 FHSPPDKDEAETPSQKGTV-TKLGQFRVKEEDDGASSLKPGALFFSRINKTSS---ASAR 208
Query: 255 GPADDLLANQNFQCSLGSSGDTQVSSSTGS 166 GPA A Q S +S + VS + GS Sbjct: 209 GPAGPSYAAATLQASNATSSASSVSKALGS 238
>sp|O02056|RL4_CAEEL 60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3 Length = 345
Score = 30.0 bits (66), Expect = 9.7 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 19/87 (21%) Frame = -2
Query: 464 LETVSSPTVASISILQKGRSVQLP-------------------TKAPYWQTNPPWPPAKM 342 L+T+ TVA+ S L+KG SV LP +AP + NP P K+ Sbjct: 259 LDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAP--KKNPVLP--KV 314
Query: 341 MTSPLLKKKNVCLSSPWLNVNMKSSKA 261 +PL K+ + +P+ ++ K+SKA Sbjct: 315 HRNPLKKRTLLYKLNPYASILRKASKA 341
>sp|Q9D3R3|CEP72_MOUSE Centrosomal protein of 72 kDa OS=Mus musculus GN=Cep72 PE=2 SV=2 Length = 646
Score = 30.0 bits (66), Expect = 9.8 Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 22/150 (14%) Frame = -1
Query: 528 QKRRTPR--PGGLVQTSLC--LPLTPRNSKLTHRGF-HIHPTKRPISTATHKGTILADKS 364 +K+ T R PG Q LC LPL + H H T +P S A KS Sbjct: 254 KKKVTSRGCPGHSPQDQLCGELPLQHGLPEACHMHVQHARITSQPDSVDVEDCASSAQKS 313
Query: 363 TMASSKDDD-----------------FSIAKKEECLSFISMAECEHEIFKSLQGPADDLL 235 +++S K + F + ECLSF+ A+ + SL D L Sbjct: 314 SLSSQKTVNPLPVPEKYRKRRMPGGRFQVPSDRECLSFLERADGPSSLEDSL-SRQDGLE 372
Query: 234 ANQNFQCSLGSSGDTQVSSSTGSIDERLLN 145 S + + + +S G+ D R+L+ Sbjct: 373 GQSQVALSHSEALEAEERTSHGTSDPRVLS 402
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TCG3 |
Definition |
tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
89 |
Score (bit) |
119.0 |
E-value |
1.0e-25 |
Report |
 |