DK953588 |
Clone id |
TST39A01NGRL0018_C19 |
Library |
TST39 |
Length |
561 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_C19. 5' end sequence. |
Accession |
DK953588 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2937Contig1 |
Sequence |
GTGTGTTGTCTTTCCTTTCACTATCACGATCCACTCAAAGATCTCCAACGCGCTCTGCTC TTGCTCACCCAAGGGCGGTCGTATACACGAAACTCGCCATTCCTGTGTTTTTTAGGGTTA GGGTAATTGATTTTCAGCATTTCGCTTGTCTCATGGGGGTTACAACATTTGGGCTCAGTT ACGTGTTTGTCTTTCTGTTCGTCCTCTGCAACCGTTCAGCTGCCTCGTTTCTCTCGTCTG ATGTCTGTCCAAAGCTTGACATTGAAGAAGTTCTCCTGCTCCAAGAGAATCAGTGTATCA TTGATGGTGACGGCAACTCATTGTATGCCGATATTGCACCTGGGGTCGCAGAGGTGAATG GAACTACACTTGAAAGAGTTTTAAGCATTCTGCAAAGCAAGCAGGATGCTTATGCTGCCA TCCTCTTCTATGCAAAGCTGGTGTCCCTTCTCCAGGACCTTAAGGCCTCTGTTTGACACA CTTTCATCAACGTTTCCAGGAAATTTACCATATAGCTGTCGAGGACTCAGCCATCCAACC AAGTGGCTCTTTCTCAATATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q17688 |
Definition |
sp|Q17688|TXNDL_CAEEL Thioredoxin domain-containing protein C06A6.5 OS=Caenorhabditis elegans |
Align length |
19 |
Score (bit) |
30.4 |
E-value |
6.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953588|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0018_C19, 5' (561 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q17688|TXNDL_CAEEL Thioredoxin domain-containing protein C06A... 30 6.3 sp|Q4P9K9|CHS8_USTMA Chitin synthase 8 OS=Ustilago maydis GN=CHS... 30 6.3 sp|Q9YKD6|RDRP_TOMS1 Replicase large subunit OS=Tomato mosaic vi... 30 8.2 sp|P03587|RDRP_TOML Replicase large subunit OS=Tomato mosaic vir... 30 8.2 sp|P89676|RDRP_TOMK2 Replicase large subunit OS=Tomato mosaic vi... 30 8.2 sp|Q9Q1T8|RDRP_TOMK1 Replicase large subunit OS=Tomato mosaic vi... 30 8.2 sp|Q98745|RDRP_TMVRA Replicase large subunit OS=Tobacco mosaic v... 30 8.2 sp|O93058|RDRP_TMVOM Replicase large subunit OS=Tobacco mosaic v... 30 8.2 sp|P30738|RDRP_TMVKR Replicase large subunit OS=Tobacco mosaic v... 30 8.2 sp|Q9YQ08|RDRP_TMVB Replicase large subunit OS=Tobacco mosaic vi... 30 8.2 sp|P03586|RDRP_TMV Replicase large subunit OS=Tobacco mosaic vir... 30 8.2
>sp|Q17688|TXNDL_CAEEL Thioredoxin domain-containing protein C06A6.5 OS=Caenorhabditis elegans GN=C06A6.5 PE=1 SV=2 Length = 413
Score = 30.4 bits (67), Expect = 6.3 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +1
Query: 439 WCPFSRTLRPLFDTLSSTF 495 WCPFSR L+P+F+ + F Sbjct: 53 WCPFSRRLKPIFEESARVF 71
>sp|Q4P9K9|CHS8_USTMA Chitin synthase 8 OS=Ustilago maydis GN=CHS8 PE=3 SV=1 Length = 2005
Score = 30.4 bits (67), Expect = 6.3 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = +1
Query: 172 GSVTCLSFCSSSATVQLPRFSRLMSVQSLTLKKFSCSKRISVSLMVTATHCMPILHLGSQ 351 GSVTCL C S ++ P R + + S ++ ++ ++ V H +LHLG Sbjct: 1499 GSVTCLPGCFSMFRIRTPDTHRPLFIASQIVEDYAENR-------VDTLHTKNLLHLGED 1551
Query: 352 R*M-ELHLKEF 381 R + L LK F Sbjct: 1552 RYLTTLVLKHF 1562
>sp|Q9YKD6|RDRP_TOMS1 Replicase large subunit OS=Tomato mosaic virus (strain S-1) PE=3 SV=1 Length = 1616
Score = 30.0 bits (66), Expect = 8.2 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1
Query: 367 HLKEF*AFCKASRMLMLPSSSMQSWCPFSR--TLRPLFD 477 H K+ A C + R+L+ SSS+ W P R + PLFD Sbjct: 341 HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFD 379
>sp|P03587|RDRP_TOML Replicase large subunit OS=Tomato mosaic virus (strain L) PE=1 SV=2 Length = 1616
Score = 30.0 bits (66), Expect = 8.2 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1
Query: 367 HLKEF*AFCKASRMLMLPSSSMQSWCPFSR--TLRPLFD 477 H K+ A C + R+L+ SSS+ W P R + PLFD Sbjct: 341 HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFD 379
>sp|P89676|RDRP_TOMK2 Replicase large subunit OS=Tomato mosaic virus (strain Kazakh K2) PE=3 SV=1 Length = 1616
Score = 30.0 bits (66), Expect = 8.2 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1
Query: 367 HLKEF*AFCKASRMLMLPSSSMQSWCPFSR--TLRPLFD 477 H K+ A C + R+L+ SSS+ W P R + PLFD Sbjct: 341 HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFD 379
>sp|Q9Q1T8|RDRP_TOMK1 Replicase large subunit OS=Tomato mosaic virus (strain Kazakh K1) PE=3 SV=2 Length = 1616
Score = 30.0 bits (66), Expect = 8.2 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1
Query: 367 HLKEF*AFCKASRMLMLPSSSMQSWCPFSR--TLRPLFD 477 H K+ A C + R+L+ SSS+ W P R + PLFD Sbjct: 341 HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFD 379
>sp|Q98745|RDRP_TMVRA Replicase large subunit OS=Tobacco mosaic virus (strain Rakkyo) PE=3 SV=1 Length = 1616
Score = 30.0 bits (66), Expect = 8.2 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1
Query: 367 HLKEF*AFCKASRMLMLPSSSMQSWCPFSR--TLRPLFD 477 H K+ A C + R+L+ SSS+ W P R + PLFD Sbjct: 341 HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIIPLFD 379
>sp|O93058|RDRP_TMVOM Replicase large subunit OS=Tobacco mosaic virus (strain OM) PE=3 SV=1 Length = 1616
Score = 30.0 bits (66), Expect = 8.2 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1
Query: 367 HLKEF*AFCKASRMLMLPSSSMQSWCPFSR--TLRPLFD 477 H K+ A C + R+L+ SSS+ W P R + PLFD Sbjct: 341 HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFD 379
>sp|P30738|RDRP_TMVKR Replicase large subunit OS=Tobacco mosaic virus (strain Korean NC 82) PE=3 SV=2 Length = 1616
Score = 30.0 bits (66), Expect = 8.2 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1
Query: 367 HLKEF*AFCKASRMLMLPSSSMQSWCPFSR--TLRPLFD 477 H K+ A C + R+L+ SSS+ W P R + PLFD Sbjct: 341 HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFD 379
>sp|Q9YQ08|RDRP_TMVB Replicase large subunit OS=Tobacco mosaic virus (strain B935A) PE=3 SV=1 Length = 1616
Score = 30.0 bits (66), Expect = 8.2 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1
Query: 367 HLKEF*AFCKASRMLMLPSSSMQSWCPFSR--TLRPLFD 477 H K+ A C + R+L+ SSS+ W P R + PLFD Sbjct: 341 HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFD 379
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NUT7 |
Definition |
tr|A9NUT7|A9NUT7_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
21 |
Score (bit) |
37.4 |
E-value |
7.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953588|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0018_C19, 5' (561 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NUT7|A9NUT7_PICSI Putative uncharacterized protein OS=Picea... 37 7e-06 tr|A7PW43|A7PW43_VITVI Chromosome chr8 scaffold_34, whole genome... 36 0.001 tr|Q5DJV7|Q5DJV7_ORYSJ Adenosine 5'-phosphosulfate reductase-lik... 32 0.007 tr|A9S8B2|A9S8B2_PHYPA Predicted protein (Fragment) OS=Physcomit... 38 0.007 tr|Q5EUC5|Q5EUC5_MAIZE Adenosine 5'-phosphosulfate reductase 5 (... 32 0.042 tr|B4FGU2|B4FGU2_MAIZE Putative uncharacterized protein OS=Zea m... 32 0.045 tr|Q9SRW3|Q9SRW3_ARATH F20H23.9 protein OS=Arabidopsis thaliana ... 40 0.088 tr|Q93YX4|Q93YX4_ARATH Putative uncharacterized protein At3g0386... 40 0.088 tr|Q2QP53|Q2QP53_ORYSJ Adenosine 5'-phosphosulfate reductase 6, ... 40 0.11 tr|B8BMC3|B8BMC3_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.11 tr|Q5EUC4|Q5EUC4_MAIZE Adenosine 5'-phosphosulfate reductase 6 (... 39 0.15 tr|B6TB09|B6TB09_MAIZE APRL6-Zea mays adenosine 5'-phosphosulfat... 39 0.15 tr|Q5EUC6|Q5EUC6_MAIZE Adenosine 5'-phosphosulfate reductase 4 O... 35 0.15 tr|A7NUY1|A7NUY1_VITVI Chromosome chr18 scaffold_1, whole genome... 35 0.42 tr|Q9SA00|Q9SA00_ARATH F21H2.1 protein (Putative uncharacterized... 36 0.42 tr|Q5EUC1|Q5EUC1_MAIZE APRL5-Zea mays adenosine 5'-phosphosulfat... 35 0.42 tr|Q6Z567|Q6Z567_ORYSJ Disulfide isomerase-like protein OS=Oryza... 32 0.42 tr|B8BAR9|B8BAR9_ORYSI Putative uncharacterized protein OS=Oryza... 32 0.42 tr|B6TY43|B6TY43_MAIZE APRL3-Zea mays adenosine 5'-phosphosulfat... 33 0.69 tr|Q5EUC7|Q5EUC7_MAIZE Adenosine 5'-phosphosulfate reductase 3 (... 33 0.69 tr|Q84P95|Q84P95_ORYSJ Os02g0754900 protein OS=Oryza sativa subs... 33 1.2 tr|A2X9R3|A2X9R3_ORYSI Putative uncharacterized protein OS=Oryza... 33 1.2 tr|Q5EUC2|Q5EUC2_MAIZE Adenosine 5'-phosphosulfate reductase 8 O... 36 1.3 tr|B6TNM3|B6TNM3_MAIZE APRL5-Zea mays adenosine 5'-phosphosulfat... 36 1.3 tr|B4G1W2|B4G1W2_MAIZE Putative uncharacterized protein OS=Zea m... 35 1.3 tr|B4FL05|B4FL05_MAIZE Putative uncharacterized protein OS=Zea m... 33 2.0 tr|A3HT12|A3HT12_9SPHI Non-ribosomal peptide synthase OS=Algorip... 35 2.1 tr|Q5EUC3|Q5EUC3_MAIZE Adenosine 5'-phosphosulfate reductase 7 O... 35 2.2 tr|B6UE94|B6UE94_MAIZE APRL6-Zea mays adenosine 5'-phosphosulfat... 35 2.2 tr|B4FJZ8|B4FJZ8_MAIZE Putative uncharacterized protein OS=Zea m... 35 2.2
>tr|A9NUT7|A9NUT7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 317
Score = 37.4 bits (85), Expect(3) = 7e-06 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 SWCPFS+ RP+F+ LSS FP Sbjct: 88 SWCPFSKQCRPVFNVLSSMFP 108
Score = 31.2 bits (69), Expect(3) = 7e-06 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = +3
Query: 246 CPKLDIEEVLLLQENQCII---DGDGNSLYADIAPGVAEVNGTTLERVLSILQSKQDAYA 416 CP ++++ N+C+ D + + V E++ +LE ILQ + Y Sbjct: 25 CPIPNLQDTF---SNKCMAFDSDSPSHGAAGFLPDRVRELDAVSLEAAFDILQRSSNTYI 81
Query: 417 AILFYA 434 A+LFYA Sbjct: 82 AVLFYA 87
Score = 23.9 bits (50), Expect(3) = 7e-06 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +2
Query: 494 FQEIYHIAVEDSAIQP 541 F I+H+AVE+SA +P Sbjct: 107 FPTIHHVAVEESASKP 122
>tr|A7PW43|A7PW43_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025467001 PE=4 SV=1 Length = 292
Score = 35.8 bits (81), Expect(2) = 0.001 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 SWCPFS +RP F+ LSS FP Sbjct: 80 SWCPFSCKMRPKFEVLSSMFP 100
Score = 30.0 bits (66), Expect(2) = 0.001 Identities = 22/82 (26%), Positives = 42/82 (51%) Frame = +3
Query: 189 VFLFVLCNRSAASFLSSDVCPKLDIEEVLLLQENQCIIDGDGNSLYADIAPGVAEVNGTT 368 +FL++ S LSS VCP L + ++ ++QC + ++L +V+G Sbjct: 9 LFLYIGAVSSLPGTLSSSVCP-LQSDFLVAFLQSQCPLSLSSHAL--------LDVDGNF 59
Query: 369 LERVLSILQSKQDAYAAILFYA 434 L+R L+ Q + + ++LF+A Sbjct: 60 LDRALTSKQG--NGFTSVLFHA 79
>tr|Q5DJV7|Q5DJV7_ORYSJ Adenosine 5'-phosphosulfate reductase-like OS=Oryza sativa subsp. japonica GN=APRL4 PE=2 SV=1 Length = 264
Score = 31.6 bits (70), Expect(2) = 0.007 Identities = 18/73 (24%), Positives = 36/73 (49%) Frame = +3
Query: 216 SAASFLSSDVCPKLDIEEVLLLQENQCIIDGDGNSLYADIAPGVAEVNGTTLERVLSILQ 395 +AA+ VCP+ +L +++ C G + GV E + L++ ++++ Sbjct: 24 AAAATAGHGVCPRQPAAAAVLPRQSSCPAAGSPGHRAHHV--GVVEGDDFVLQKAVTLVL 81
Query: 396 SKQDAYAAILFYA 434 ++ + AILFYA Sbjct: 82 QNREDFVAILFYA 94
Score = 31.6 bits (70), Expect(2) = 0.007 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 SWCPFS+ R F LSS FP Sbjct: 95 SWCPFSKIFRTDFQKLSSFFP 115
>tr|A9S8B2|A9S8B2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_46378 PE=4 SV=1 Length = 175
Score = 37.7 bits (86), Expect(2) = 0.007 Identities = 13/21 (61%), Positives = 18/21 (85%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 +WCPFSR +RP++D LS+ FP Sbjct: 31 TWCPFSRQVRPVYDVLSTIFP 51
Score = 25.4 bits (54), Expect(2) = 0.007 Identities = 7/17 (41%), Positives = 15/17 (88%) Frame = +2
Query: 494 FQEIYHIAVEDSAIQPS 544 F ++H+A+E+S+++PS Sbjct: 50 FPTVHHVAIEESSVRPS 66
>tr|Q5EUC5|Q5EUC5_MAIZE Adenosine 5'-phosphosulfate reductase 5 (Putative uncharacterized protein) OS=Zea mays GN=APRL5 PE=2 SV=1 Length = 267
Score = 31.6 bits (70), Expect(2) = 0.042 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 SWCPFS+ R F LSS FP Sbjct: 98 SWCPFSKIFRTDFQKLSSFFP 118
Score = 28.9 bits (63), Expect(2) = 0.042 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +3
Query: 243 VCPKLDIEEVLLLQENQC-IIDGDGNSLYADIAPGVAEVNGTTLERVLSILQSKQDAYAA 419 VC + + V+L Q + C +D G L A V +G + V +LQ+++D + A Sbjct: 36 VCQRPPVAAVILQQASTCRAVDAPG--LRGHRAGFVEGDDGALQKAVALVLQNRED-FVA 92
Query: 420 ILFYA 434 ILFYA Sbjct: 93 ILFYA 97
>tr|B4FGU2|B4FGU2_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 149
Score = 31.6 bits (70), Expect(2) = 0.045 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 SWCPFS+ R F LSS FP Sbjct: 98 SWCPFSKIFRTDFQKLSSFFP 118
Score = 28.9 bits (63), Expect(2) = 0.045 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +3
Query: 243 VCPKLDIEEVLLLQENQC-IIDGDGNSLYADIAPGVAEVNGTTLERVLSILQSKQDAYAA 419 VC + + V+L Q + C +D G L A V +G + V +LQ+++D + A Sbjct: 36 VCQRPPVAAVILQQASTCRAVDAPG--LRGHRAGFVEGDDGALQKAVALVLQNRED-FVA 92
Query: 420 ILFYA 434 ILFYA Sbjct: 93 ILFYA 97
>tr|Q9SRW3|Q9SRW3_ARATH F20H23.9 protein OS=Arabidopsis thaliana GN=F20H23.9 PE=4 SV=1 Length = 318
Score = 40.0 bits (92), Expect = 0.088 Identities = 16/21 (76%), Positives = 17/21 (80%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 SWCPFSR +RP FD LSS FP Sbjct: 84 SWCPFSRAVRPKFDMLSSMFP 104
>tr|Q93YX4|Q93YX4_ARATH Putative uncharacterized protein At3g03860 OS=Arabidopsis thaliana GN=At3g03860 PE=2 SV=1 Length = 300
Score = 40.0 bits (92), Expect = 0.088 Identities = 16/21 (76%), Positives = 17/21 (80%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 SWCPFSR +RP FD LSS FP Sbjct: 84 SWCPFSRAVRPKFDMLSSMFP 104
>tr|Q2QP53|Q2QP53_ORYSJ Adenosine 5'-phosphosulfate reductase 6, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g35640 PE=4 SV=1 Length = 300
Score = 39.7 bits (91), Expect = 0.11 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 SWCPFS+ +RP+FD LSS FP Sbjct: 88 SWCPFSQRMRPVFDDLSSMFP 108
>tr|B8BMC3|B8BMC3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38622 PE=4 SV=1 Length = 218
Score = 39.7 bits (91), Expect = 0.11 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +1
Query: 436 SWCPFSRTLRPLFDTLSSTFP 498 SWCPFS+ +RP+FD LSS FP Sbjct: 89 SWCPFSQRMRPVFDDLSSMFP 109
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