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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953593
Clone id TST39A01NGRL0018_D01
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_D01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCCACACACACACACACACATACACACACTTGCGGGGACAGCGATGTCAGCCCGCAAACC
GCGTTTCGAAGAGAGAGAATCGTGAAGCAGAGCTTCTCCCTCCTAGTCCCCCTCTTCCCT
CTCAGATCCCTTCCCTCTTTTCCTGTTTAATGCTTTCGCAAAGATAGAGAAGCGCGCAGA
CAGCCGGCAGAAAGCTCGCAGAAAGGAGCCCCCCAACCCCTTTCTTCCTTTTGCAGGTGG
AAGCCTTCAGTTTGTGGTACTCAAAGCTCAGCCATGGCGGTGCTAATGAATAGCCTGCTT
TCTCCCCCTTTTCGGCTGCTGGAGAGATAAGGTGTCAGCACGTAGAAACGCAAGGTTAGC
GAGATTGCGAAAGTTTTTTTGCGAGTGTGATCTTCGAAAGCAGTCAATTTAGCAGGAAGC
AACAGGCAAGGAAGCAGGGGGCAAGGTGGAAGGTAGGAAATTGGTAGAAGCTCTGCAGAA
CAGGAGCAAGCCCACAGATCTGGTGGAACAGAGACCGGACATGGTCGTTAAGATGATGAA
ATGGCGGCCCTGGCCTTCTGTCACCTCCAAAAAAGTTCCAAGTTTACCTTACTGTTTCAG
CCCTAGAAG
■■Homology search results ■■ -
sp_hit_id Q86CR9
Definition sp|Q86CR9|ATG7_DICDI Autophagy-related protein 7 OS=Dictyostelium discoideum
Align length 50
Score (bit) 34.7
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953593|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D01, 5'
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86CR9|ATG7_DICDI Autophagy-related protein 7 OS=Dictyosteliu...    35   0.39 
sp|Q871U2|ATG7_NEUCR Autophagy-related protein 7 OS=Neurospora c...    34   0.67 
sp|P47152|YJ85_YEAST Uncharacterized protein YJR115W OS=Saccharo...    26   2.3  
sp|A6QXC6|ATG7_AJECN Autophagy-related protein 7 OS=Ajellomyces ...    32   2.5  
sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus GN=...    30   7.4  
sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=O...    30   7.4  

>sp|Q86CR9|ATG7_DICDI Autophagy-related protein 7 OS=Dictyostelium
           discoideum GN=atg7 PE=3 SV=1
          Length = 707

 Score = 34.7 bits (78), Expect = 0.39
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +2

Query: 428 KEAGGKVEGRKLVEALQNRSKPTDLVEQRPDMVVKMMKWRPWPSVTSKKV 577
           K++ GK+  R +  +L +   P  L EQ  D+ +K+M+WR  PS+  +K+
Sbjct: 312 KDSNGKIAPRFV--SLASTMDPLKLAEQSVDLNLKLMRWRVMPSLELEKI 359


>sp|Q871U2|ATG7_NEUCR Autophagy-related protein 7 OS=Neurospora
           crassa GN=atg-7 PE=3 SV=1
          Length = 699

 Score = 33.9 bits (76), Expect = 0.67
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 416 EATGKEAGGKVEGRKLVEALQNRSKPTDLVEQRPDMVVKMMKWRPWPSV 562
           + TG E  G  + R  V  L     PT L +Q  D+ +K+MKWR  P++
Sbjct: 308 KVTGWERNGNGDLRPRVANLAEYMDPTRLADQAVDLNLKLMKWRLAPNL 356


>sp|P47152|YJ85_YEAST Uncharacterized protein YJR115W
          OS=Saccharomyces cerevisiae GN=YJR115W PE=4 SV=1
          Length = 169

 Score = 26.2 bits (56), Expect(2) = 2.3
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 3  HTHTHTYTHL 32
          HTHTHT+TH+
Sbjct: 21 HTHTHTHTHI 30



 Score = 24.6 bits (52), Expect(2) = 2.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 5  HTHTHIHTLAGTAMSAR 55
          HTHTHI+   G  +S R
Sbjct: 25 HTHTHIYIYTGDQVSVR 41


>sp|A6QXC6|ATG7_AJECN Autophagy-related protein 7 OS=Ajellomyces
           capsulata (strain NAm1 / WU24) GN=ATG7 PE=3 SV=1
          Length = 695

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 428 KEAGGKVEGRKLVEALQNRSKPTDLVEQRPDMVVKMMKWRPWPSVTSKKV 577
           + A GK+ GR  V  L     P  L +Q  D+ +K+MKWR  P++  + +
Sbjct: 329 RNAAGKLTGR--VTNLTEYMDPRRLADQSVDLNLKLMKWRISPNLNLENI 376


>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus
           GN=Sim1 PE=1 SV=3
          Length = 765

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 335 TPYLSSSRKGGESRLFISTAMAEL-*VPQTEGFHLQKEE 222
           TP +S +RKG +SRL  S + +     PQ  GFH ++ E
Sbjct: 361 TPTISDNRKGAKSRLSSSKSKSRTSPYPQYSGFHTERSE 399


>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40
           OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2
           SV=2
          Length = 792

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 245 GFHLQKEERGWGAPFCELSAGCLRASLSLRKH*TGKEGRDLRGKRGTRREK 93
           G H + + R  G      S+G L +S S R+H  G +GR  R  RG  R +
Sbjct: 549 GSHSELDSRYGGRDGLSGSSGRLDSSRSSRRHDYGDDGRSRRSGRGRSRSR 599
tr_hit_id Q9SF22
Definition tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana
Align length 18
Score (bit) 36.2
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953593|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D01, 5'
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana ...    36   1.5  
tr|Q0WKW4|Q0WKW4_ARATH Putative uncharacterized protein At3g1176...    36   1.5  
tr|Q0GNK9|Q0GNK9_9ZZZZ Putative uncharacterized protein OS=uncul...    36   2.0  
tr|B3ED75|B3ED75_CHLL2 UbiA prenyltransferase OS=Chlorobium limi...    35   3.4  
tr|B2B4M3|B2B4M3_PODAN Predicted CDS Pa_2_1770 OS=Podospora anse...    35   4.4  
tr|A7Q079|A7Q079_VITVI Chromosome chr8 scaffold_41, whole genome...    34   7.5  
tr|A4IE47|A4IE47_LEIIN Putative uncharacterized protein OS=Leish...    27   7.8  
tr|Q38DI0|Q38DI0_9TRYP Putative uncharacterized protein OS=Trypa...    33   9.8  

>tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana
           GN=At3g11760 PE=4 SV=1
          Length = 702

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 521 MVVKMMKWRPWPSVTSKK 574
           MVVKMMKWRPWP + ++K
Sbjct: 1   MVVKMMKWRPWPPLVTRK 18


>tr|Q0WKW4|Q0WKW4_ARATH Putative uncharacterized protein At3g11760
           OS=Arabidopsis thaliana GN=At3g11760 PE=2 SV=1
          Length = 394

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 521 MVVKMMKWRPWPSVTSKK 574
           MVVKMMKWRPWP + ++K
Sbjct: 1   MVVKMMKWRPWPPLVTRK 18


>tr|Q0GNK9|Q0GNK9_9ZZZZ Putative uncharacterized protein
           OS=uncultured organism PE=4 SV=1
          Length = 140

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 3   HTHTHTYTHLRGQRCQPANRVSKRENREAE 92
           HTHTHT+TH   +R +   RVS+RE RE E
Sbjct: 88  HTHTHTHTHTHAERERERERVSERE-RERE 116


>tr|B3ED75|B3ED75_CHLL2 UbiA prenyltransferase OS=Chlorobium
           limicola (strain DSM 245 / NBRC 103803) GN=Clim_1440
           PE=4 SV=1
          Length = 340

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -1

Query: 552 QGRHFIILTTMSGLCSTRSVGLLLFCRASTNFLP-STLPPASLPVASC*IDCFRRSHSQK 376
           Q +HF+I+T+++        GLLLFC   TN LP ST    +  VA   I      H + 
Sbjct: 260 QTKHFLIITSLAS-------GLLLFCLTFTNSLPASTYFLLANNVAVILIASMYNEHKEA 312

Query: 375 NFRNLANLAFLRADTLSL 322
             R +++++ L A  L L
Sbjct: 313 FMRKISDMSILLATILFL 330


>tr|B2B4M3|B2B4M3_PODAN Predicted CDS Pa_2_1770 OS=Podospora
           anserina PE=4 SV=1
          Length = 697

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 416 EATGKEAGGKVEGRKLVEALQNRSKPTDLVEQRPDMVVKMMKWRPWPSV 562
           + TG E  G  + R+ V  L     PT L +Q  D+ +K+MKWR  P++
Sbjct: 312 DVTGWERDGGSKLRRRVADLAEYMDPTKLADQAVDLNLKLMKWRLAPNL 360


>tr|A7Q079|A7Q079_VITVI Chromosome chr8 scaffold_41, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027182001
           PE=4 SV=1
          Length = 715

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 521 MVVKMMKWRPWPSVTSKK 574
           MVVKMM+WRPWP +  +K
Sbjct: 1   MVVKMMRWRPWPPLIPRK 18


>tr|A4IE47|A4IE47_LEIIN Putative uncharacterized protein
          OS=Leishmania infantum GN=LinJ36.6870 PE=4 SV=1
          Length = 1712

 Score = 26.9 bits (58), Expect(2) = 7.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 5  HTHTHIHTLAGT 40
          HTHTH HT+ GT
Sbjct: 20 HTHTHTHTMLGT 31



 Score = 25.4 bits (54), Expect(2) = 7.8
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 3  HTHTHTYTH 29
          HTHTHT+TH
Sbjct: 14 HTHTHTHTH 22


>tr|Q38DI0|Q38DI0_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb09.211.3260 PE=4 SV=1
          Length = 169

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   HTHTHTYTHLRGQRCQPANRVSKRENRE 86
           HTHTHTYTH    + + A   +K+  RE
Sbjct: 133 HTHTHTYTHTHNNKKRQAKERNKQNERE 160