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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953603
Clone id TST39A01NGRL0018_D11
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_D11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTGCATACATATCTTATCTCTCTCATTTTTTGTGTGTACAGCTCGTAACCTTATCTTCTC
CGTCTCTTCTCTACACTTCTCCATCCCCCTGAAGCCATGAGCATCCGTGACTCTGTCCGC
TTCCGTGTCGACTCCACAAATGGTATCAGAGCACTAGCTTTGTCTTGGGTAAAAAGCTCC
TGGAAGGAAGAGTTTGAGCAGACAGGAAACAAAGGGGGAGGCTCTGAGAGAGTTGGAAGA
ACAACCTTGTTGATCTCACTCTCTGCGGGGTTGTCTTATTTCAGCTCCGACGGCTGTTGG
TGGCACTACCACAACAATGCCCATGTAAGGGCGGTTCAACCATCAATGCAGTGCCTAAGA
GGGCAGCACTACCGACAAACAAGAGAAGGCCGGCTAGGCTCAGGAGGCTGTCAGGGGCTC
TGGGAGTAGACCAAGGGCACGATTGCAGGAGAAGGCTCGTTCATGTAGGAGAAGGCAACA
ACAACACACAAGGAGTGGGGGTTTTGAGAGCACTGGCAGAGGGGCGCCAGGCCTTGCACC
ATGGGCAGCTACATAAGCCTCA
■■Homology search results ■■ -
sp_hit_id P39881
Definition sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment) OS=Canis familiaris
Align length 42
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953603|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D11, 5'
         (562 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment) OS=C...    32   1.7  
sp|Q924N4|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus m...    32   2.8  
sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis glossi...    31   4.8  
sp|P08892|PGKD_TRYBB Phosphoglycerate kinase A OS=Trypanosoma br...    30   6.2  
sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=...    30   8.1  
sp|P0A4R4|URED_BORPE Urease accessory protein ureD OS=Bordetella...    30   8.2  
sp|P0A4R6|URED_BORPA Urease accessory protein ureD OS=Bordetella...    30   8.2  
sp|P0A4R5|URED_BORBR Urease accessory protein ureD OS=Bordetella...    30   8.2  

>sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment)
           OS=Canis familiaris GN=CUX1 PE=2 SV=1
          Length = 975

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 407 AVRGSGSRPRARLQEKARSCRRRQQQHTRSGGFESTGRGAPG 532
           A RG   RP AR + + R  RRR+++H R GG     R A G
Sbjct: 857 AARGPSRRPGARAKPRRR--RRRRRRHARGGGRRYLSRPARG 896


>sp|Q924N4|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus
           musculus GN=Slc12a6 PE=1 SV=1
          Length = 1150

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
 Frame = +1

Query: 79  LHPPEAMSIRDSVRFRV------------DSTNGIRALALSWVKSSWKEEFEQTGNKGGG 222
           +HPPEA +   SVRF V            D++  + + + S V+ S +E   +T      
Sbjct: 1   MHPPEATTKMSSVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVRFSSRESVPETSRSEPM 60

Query: 223 SERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREG 390
           SE  G TT L +++      SSD       +N       PS   + G+H +   +G
Sbjct: 61  SELSGATTSLATVALDP---SSDRT-----SNPQDVTEDPSQNSITGEHSQLLDDG 108


>sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis
           glossinidius (strain morsitans) GN=rplR PE=3 SV=1
          Length = 117

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 124 RVDSTNGIRAL-ALSWVKSSWKEEFEQTGNKGGGSERVGRTTLLISLSAGLSYFSSDGCW 300
           +V + NG   L A S V+ +  E+ + TGNK   +  VG+T  + +L  G+   S D   
Sbjct: 38  QVIAPNGSEVLVAASTVEKAIAEQLKGTGNKDAAAA-VGKTIAVRALEKGIKDVSFDRSG 96

Query: 301 WHYHNNAHVRA 333
           + YH      A
Sbjct: 97  FQYHGRVQALA 107


>sp|P08892|PGKD_TRYBB Phosphoglycerate kinase A OS=Trypanosoma
           brucei brucei PE=3 SV=1
          Length = 508

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
 Frame = +3

Query: 237 KNNL-VDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKRAALPTNKRRPARLRRLS 413
           KNN+ +  ++  V     +R+L+ +    P + G   N    RAA+PT       +RR+ 
Sbjct: 8   KNNISLKKSVGDVFRLTAKRVLMRVDFNVPMQNGHITNDYRIRAAIPT-------IRRV- 59

Query: 414 GALGVDQGHDCRRRLVHVGEGNNNTQGVGVLRALAEGRQALHHGQLH 554
               +DQG  C   L H+G      +GV ++  + + R+  H  Q H
Sbjct: 60  ----IDQGGIC-ILLSHLG----RPRGVSMVAGVRDIRRRYHEAQFH 97


>sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=Mus
           musculus GN=Ssh1 PE=1 SV=1
          Length = 1042

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 29/95 (30%), Positives = 41/95 (43%)
 Frame = +3

Query: 183 EGRV*ADRKQRGRL*ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKR 362
           EG + A +++  +L   W+    D T+     F    L  AL  Q PC   +T   +P R
Sbjct: 444 EGILDASKQRHNKL---WRQQPTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLP-R 499

Query: 363 AALPTNKRRPARLRRLSGALGVDQGHDCRRRLVHV 467
           +  P     P   RRLS  L +   HD    LVH+
Sbjct: 500 SLAPGGPALPCCFRRLSDPLLLPH-HDETGGLVHL 533


>sp|P0A4R4|URED_BORPE Urease accessory protein ureD OS=Bordetella
           pertussis GN=ureD PE=3 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 76  LLHPPEAMSIRDSVRFRVDSTNGIRAL-----ALSWVKSSWKE 189
           +LHPP  ++  D++  RVD   G RA      A  W KS+ ++
Sbjct: 53  ILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQ 95


>sp|P0A4R6|URED_BORPA Urease accessory protein ureD OS=Bordetella
           parapertussis GN=ureD PE=3 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 76  LLHPPEAMSIRDSVRFRVDSTNGIRAL-----ALSWVKSSWKE 189
           +LHPP  ++  D++  RVD   G RA      A  W KS+ ++
Sbjct: 53  ILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQ 95


>sp|P0A4R5|URED_BORBR Urease accessory protein ureD OS=Bordetella
           bronchiseptica GN=ureD PE=3 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 76  LLHPPEAMSIRDSVRFRVDSTNGIRAL-----ALSWVKSSWKE 189
           +LHPP  ++  D++  RVD   G RA      A  W KS+ ++
Sbjct: 53  ILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQ 95
tr_hit_id B5YLR2
Definition tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335
Align length 65
Score (bit) 37.4
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953603|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D11, 5'
         (562 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira pseudo...    37   0.57 
tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein OS=Botry...    34   4.7  
tr|B6SPV4|B6SPV4_MAIZE Putative uncharacterized protein OS=Zea m...    33   8.2  

>tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPS_10869 PE=4 SV=1
          Length = 414

 Score = 37.4 bits (85), Expect = 0.57
 Identities = 25/65 (38%), Positives = 32/65 (49%)
 Frame = +1

Query: 70  STLLHPPEAMSIRDSVRFRVDSTNGIRALALSWVKSSWKEEFEQTGNKGGGSERVGRTTL 249
           ST  HPP     + S+R+R++S   + A      K  WK +FE   NK GGS   G T L
Sbjct: 2   STKSHPPSVSLGKPSLRYRLESYYSLIAPDAIADKEDWKRKFEIIYNKFGGSVE-GETRL 60

Query: 250 LISLS 264
              LS
Sbjct: 61  ANKLS 65


>tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_15625
           PE=4 SV=1
          Length = 371

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = -3

Query: 269 PAESEINKVVLPT----LSEPPP---LFPVCSNSSFQELFTQDKASALIPFVESTRK 120
           P +   NK V+P     L EPPP   LFP  ++SSF +   ++  +AL P +  TR+
Sbjct: 148 PKKQRSNKQVVPPIIIGLHEPPPQAALFPPIASSSFHDSHGRNTLNALAPKITETRE 204


>tr|B6SPV4|B6SPV4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = +2

Query: 401 QEAVRGSGSRPRARLQEKARSCRRRQQQHTRSGGFESTGRGAPGLA 538
           Q  V  SGSR RA  Q +A +C R + Q   +GG    GRG  G A
Sbjct: 8   QPGVNHSGSRQRAGEQLEALACCRNRWQLLAAGGRRLAGRGCGGSA 53