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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953608
Clone id TST39A01NGRL0018_D16
Library
Length 444
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_D16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAAAGATGTCTTCAGGGGAGTTGACTCTTCATGGCGGTTACTATGATTTTGTGAACAATG
CATTTGAGAGTTGGTCGGTAGATTTGGCATCAATGTCGAAGGTCGAAAAGGTGCATTAAG
TGGGTACAGACTGTCTCTAGGATGGAGGGTAACTAACAAAGAATTGCTGTGAGCGGCAAA
TAGCCTTCCTCTTCTCACGAGAGAGAAAGATGGTGTAGCAGCAATGAGTGTTCTTCATGG
CATATGAGTTATATTGCTCTTGATTCGAGTTATGCATATCCAGAAAAACCATCTTGAGTG
TATCATATATTGTAACTAATCGATGGCATCGGGTTGGGACTATGGTTAACTAATTTTTCA
TCTTGTTGCAGCTACTAAAGTATCAATTTTATTGAATCCATCTCATGTGATTTCTTTTTG
GTGAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P27140
Definition sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana
Align length 35
Score (bit) 37.0
E-value 0.032
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953608|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D16, 5'
         (423 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabid...    37   0.032
sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thalian...    36   0.054
sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=...    35   0.092
sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2...    35   0.092
sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinac...    35   0.092
sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis P...    35   0.092
sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=...    35   0.12 
sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria...    33   0.35 
sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sa...    33   0.46 
sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicoti...    33   0.60 
sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeu...    32   0.78 
sp|P46551|CD2L7_CAEEL Putative cell division cycle 2-related pro...    30   3.0  
sp|Q8K371|AMOL2_MOUSE Angiomotin-like protein 2 OS=Mus musculus ...    29   6.6  
sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens ...    29   6.6  
sp|Q9PR43|Y101_UREPA Uncharacterized protein UU101 OS=Ureaplasma...    29   8.6  
sp|Q6FNJ1|IPI3_CANGA Pre-rRNA-processing protein IPI3 OS=Candida...    29   8.8  

>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic
           OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2
          Length = 347

 Score = 37.0 bits (84), Expect = 0.032
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 15  GELTLHGGYYDFVNNAFESWSVD--LASMSKVEKV 113
           G L L GGYYDFV  AFE W ++  L+  S V+ V
Sbjct: 305 GTLALKGGYYDFVKGAFELWGLEFGLSETSSVKDV 339


>sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thaliana
           GN=CA2 PE=1 SV=2
          Length = 259

 Score = 36.2 bits (82), Expect = 0.054
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 15  GELTLHGGYYDFVNNAFESWSV 80
           G L L GGYYDFVN +FE W +
Sbjct: 228 GTLALKGGYYDFVNGSFELWEL 249


>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2
           SV=1
          Length = 329

 Score = 35.4 bits (80), Expect = 0.092
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 6   MSSGELTLHGGYYDFVNNAFESWSVDLASMS 98
           + +  L L GG+YDFVN  FE W++D    S
Sbjct: 295 LRNNTLALKGGHYDFVNGTFELWALDFGLSS 325


>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2
           SV=1
          Length = 330

 Score = 35.4 bits (80), Expect = 0.092
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 6   MSSGELTLHGGYYDFVNNAFESWSVDLASMS 98
           + +  L L GG+YDFVN  FE W++D    S
Sbjct: 296 LRNNTLALKGGHYDFVNGTFELWALDFGLSS 326


>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia
           oleracea PE=1 SV=2
          Length = 319

 Score = 35.4 bits (80), Expect = 0.092
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 21  LTLHGGYYDFVNNAFESWSVD 83
           L L GGYYDFVN +FE W ++
Sbjct: 290 LALQGGYYDFVNGSFELWGLE 310


>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2
           SV=1
          Length = 330

 Score = 35.4 bits (80), Expect = 0.092
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 6   MSSGELTLHGGYYDFVNNAFESWSVDLASMS 98
           + +  L L GG+YDFVN  FE W++D    S
Sbjct: 296 LRNNTLALKGGHYDFVNGTFELWALDFGLSS 326


>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2
           SV=2
          Length = 330

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  LTLHGGYYDFVNNAFESWSVDLASMS 98
           L L GG+YDFVN  FE W++D    S
Sbjct: 301 LALKGGHYDFVNGTFELWALDFGLSS 326


>sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria
           linearis PE=2 SV=1
          Length = 190

 Score = 33.5 bits (75), Expect = 0.35
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 18  ELTLHGGYYDFVNNAFESWSVD 83
           +L+L G +YDFVN AF+ W++D
Sbjct: 160 KLSLKGAHYDFVNGAFDLWNLD 181


>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 21  LTLHGGYYDFVNNAFESWSVDLASMS 98
           L L GGYYDFV  +FE W ++    S
Sbjct: 299 LALKGGYYDFVKGSFELWGLEFGLSS 324


>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana
           tabacum PE=2 SV=1
          Length = 321

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 21  LTLHGGYYDFVNNAFESWSVD 83
           L L GG+YDFVN  FE W ++
Sbjct: 292 LALKGGHYDFVNGGFELWGLE 312
tr_hit_id Q94CE3
Definition tr|Q94CE3|Q94CE3_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
Align length 30
Score (bit) 43.1
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953608|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D16, 5'
         (423 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q94CE3|Q94CE3_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    43   0.007
tr|Q2V3C0|Q2V3C0_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    43   0.007
tr|O81875|O81875_ARATH Carbonate dehydratase-like protein OS=Ara...    43   0.007
tr|A7NUN0|A7NUN0_VITVI Carbonic anhydrase OS=Vitis vinifera GN=G...    42   0.015
tr|A5B0N2|A5B0N2_VITVI Putative uncharacterized protein OS=Vitis...    42   0.015
tr|A7QVV7|A7QVV7_VITVI Carbonic anhydrase OS=Vitis vinifera GN=G...    42   0.020
tr|A5C5J0|A5C5J0_VITVI Carbonic anhydrase OS=Vitis vinifera GN=V...    42   0.020
tr|A9RV59|A9RV59_PHYPA Carbonic anhydrase OS=Physcomitrella pate...    40   0.075
tr|A9P240|A9P240_PICSI Carbonic anhydrase OS=Picea sitchensis PE...    38   0.28 
tr|A6XN03|A6XN03_PRUPE Carbonic anhydrase OS=Prunus persica PE=3...    38   0.28 
tr|A7Y7M9|A7Y7M9_PRUDU Carbonic anhydrase (Fragment) OS=Prunus d...    37   0.37 
tr|B7ZYT1|B7ZYT1_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|B6TGY7|B6TGY7_MAIZE Carbonic anhydrase OS=Zea mays PE=2 SV=1        37   0.49 
tr|B4FWC5|B4FWC5_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|B4FJQ5|B4FJQ5_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|Q69MC9|Q69MC9_ORYSJ Carbonic anhydrase OS=Oryza sativa subsp....    37   0.63 
tr|B8BCM5|B8BCM5_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.63 
tr|A3BZP0|A3BZP0_ORYSJ Carbonic anhydrase OS=Oryza sativa subsp....    37   0.63 
tr|A1XX45|A1XX45_9MAGN Carbonic anhydrase OS=Pachysandra termina...    37   0.63 
tr|Q9LLL5|Q9LLL5_PYRPY Carbonic anhydrase isoform 1 OS=Pyrus pyr...    36   0.83 
tr|Q3E9H5|Q3E9H5_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    36   0.83 
tr|Q2V377|Q2V377_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    36   0.83 
tr|Q2V376|Q2V376_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    36   0.83 
tr|Q7S888|Q7S888_NEUCR Predicted protein OS=Neurospora crassa GN...    36   1.1  
tr|Q56X90|Q56X90_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    36   1.1  
tr|Q56WK1|Q56WK1_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    36   1.1  
tr|B6V6R6|B6V6R6_9CONI Putative carbonate dehydratase protein (F...    36   1.1  
tr|A7PM94|A7PM94_VITVI Carbonic anhydrase OS=Vitis vinifera GN=G...    36   1.1  
tr|A5BQL5|A5BQL5_VITVI Carbonic anhydrase OS=Vitis vinifera GN=V...    36   1.1  
tr|Q6Q9W7|Q6Q9W7_THLCA Carbonic anhydrase OS=Thlaspi caerulescen...    35   1.4  

>tr|Q94CE3|Q94CE3_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At4g33580 PE=2 SV=1
          Length = 301

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   KMSSGELTLHGGYYDFVNNAFESWSVDLAS 92
           K+  G L+LHGGYY+FV+  FE W+VD A+
Sbjct: 252 KVRQGSLSLHGGYYNFVDCTFEKWTVDYAA 281


>tr|Q2V3C0|Q2V3C0_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At4g33580 PE=3 SV=1
          Length = 302

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   KMSSGELTLHGGYYDFVNNAFESWSVDLAS 92
           K+  G L+LHGGYY+FV+  FE W+VD A+
Sbjct: 253 KVRQGSLSLHGGYYNFVDCTFEKWTVDYAA 282


>tr|O81875|O81875_ARATH Carbonate dehydratase-like protein
           OS=Arabidopsis thaliana GN=T16L1.70 PE=4 SV=1
          Length = 173

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   KMSSGELTLHGGYYDFVNNAFESWSVDLAS 92
           K+  G L+LHGGYY+FV+  FE W+VD A+
Sbjct: 124 KVRQGSLSLHGGYYNFVDCTFEKWTVDYAA 153


>tr|A7NUN0|A7NUN0_VITVI Carbonic anhydrase OS=Vitis vinifera
           GN=GSVIVT00015113001 PE=3 SV=1
          Length = 236

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +3

Query: 15  GELTLHGGYYDFVNNAFESWSVDLASMSKVEKVH*VGTDCL 137
           G L++HGGYYDF+N  FE W++D    S +EK    G  CL
Sbjct: 192 GLLSIHGGYYDFLNCTFEKWTIDF-KRSSIEK---EGPKCL 228


>tr|A5B0N2|A5B0N2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003553 PE=4 SV=1
          Length = 356

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +3

Query: 15  GELTLHGGYYDFVNNAFESWSVDLASMSKVEKVH*VGTDCL 137
           G L++HGGYYDF+N  FE W++D    S +EK    G  CL
Sbjct: 312 GLLSIHGGYYDFLNCTFEKWTIDF-KRSSIEK---EGPKCL 348


>tr|A7QVV7|A7QVV7_VITVI Carbonic anhydrase OS=Vitis vinifera
           GN=GSVIVT00007538001 PE=3 SV=1
          Length = 262

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   KMSSGELTLHGGYYDFVNNAFESWSVD 83
           ++  G L++HGGYYDFVN  FE W++D
Sbjct: 220 RVERGMLSIHGGYYDFVNCTFEKWTLD 246


>tr|A5C5J0|A5C5J0_VITVI Carbonic anhydrase OS=Vitis vinifera
           GN=VITISV_005703 PE=3 SV=1
          Length = 211

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   KMSSGELTLHGGYYDFVNNAFESWSVD 83
           ++  G L++HGGYYDFVN  FE W++D
Sbjct: 169 RVERGMLSIHGGYYDFVNCTFEKWTLD 195


>tr|A9RV59|A9RV59_PHYPA Carbonic anhydrase OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_205864 PE=3 SV=1
          Length = 253

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +3

Query: 3   KMSSGELTLHGGYYDFVNNAFESWSVDL 86
           K+   +L+LHGGYYDFV   F++W +D+
Sbjct: 218 KVIGNKLSLHGGYYDFVKGYFQTWDLDI 245


>tr|A9P240|A9P240_PICSI Carbonic anhydrase OS=Picea sitchensis PE=2
           SV=1
          Length = 303

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 6   MSSGELTLHGGYYDFVNNAFESWSV 80
           ++  +L+LHGGYYDFV   FE W+V
Sbjct: 258 VAQDKLSLHGGYYDFVEGYFEQWTV 282


>tr|A6XN03|A6XN03_PRUPE Carbonic anhydrase OS=Prunus persica PE=3
           SV=1
          Length = 301

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 21  LTLHGGYYDFVNNAFESWSVDLASMSKV 104
           L+LHGGYYDF+   FE W++D+  +  V
Sbjct: 260 LSLHGGYYDFLRCTFEKWTLDMNGIRPV 287